mRNA_12629 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167154
Unique NamemRNA_12629
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167154 vs. uniprot
Match: A0A836CDK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK2_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.010e-43
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 1 
Query:    1 MPRALQELRIAECDLSSVLPQLHALIRFTNAGPQADALTLVKSISASSTLSLLPTCFGGLSALTVLDLTNCAELDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTHLELARVAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWYCMALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACNELLDRAPDSLKWVNWWVEIEYDNW 1071
            MPRALQELRIAECDLSSVLPQLHALIRFTNAGPQADALTLVKSISASSTLSLLPTCFGGLSALTVLDLTNCAELDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTHLELARVAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWYCMALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACNELLDRAPDSLKWVNWWVEIEYDNW
Sbjct:    1 MPRALQELRIAECDLSSVLPQLHALIRFTNAGPQADALTLVKSISASSTLSLLPTCFGGLSALTVLDLTNCAELDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTHLELARVAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWYCMALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACNELLDRAPDSLKWVNWWVEIEYDNW 357
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167154 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDK2_9STRA7.010e-43100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:788573..789646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167154|e_gw1.48.31.1
Hectar predicted targeting categoryother localisation
TranscriptId167476
TrackFilteredModels1
ProteinId167154
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167154gene_12629Tribonema minus UTEX_B_3156 geneContig_48 788573..789646 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12629_1exon_12629_1Tribonema minus UTEX_B_3156 exonContig_48 788573..789646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12629CDS_12629Tribonema minus UTEX_B_3156 CDSContig_48 788573..789646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167154Trimin1|167154|e_gw1.48.31.1Tribonema minus UTEX_B_3156 polypeptideContig_48 788573..789646 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12629 ID=mRNA_12629|Name=jgi.p|Trimin1|167154|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1074bp|location=Sequence derived from alignment at Contig_48:788573..789646+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGTGCGCTGCAGGAGCTGCGCATTGCAGAGTGCGACCTCAGCAG
CGTGCTGCCGCAGCTGCATGCGCTCATCCGATTTACAAATGCGGGCCCCC
AGGCAGATGCGCTGACGCTAGTCAAGTCTATCTCGGCAAGTTCCACCTTG
AGTCTCCTGCCGACTTGCTTTGGCGGTCTGTCAGCACTGACGGTTCTGGA
CCTTACCAACTGCGCAGAGCTAGATAGCCTACCCGACAGCATTTGTGATC
TGGCGTCACTGACAACGCTGCGGTTGTGCAACTTCGCCGGCCTGACATTT
TTACCGGATCGCATCAGCGACCTCAGTGCGTTAAGGGACCTTTGCCTGCA
CACATGTCCGCAGCTGACAGCCCTGCCGCAGACCATGAGCAATCTGACGT
CGCTGACTCACCTTGAATTGGCGAGGGTGGCGGTGACCAGTCTGCCGGAC
CGTCTTGGTGATCTGGCAGCGCTGACAAAGCTGTCGGTAAGGAACTGCGA
TGTCCTGATGACAGTGCCTGACTCCATCGGCACTCTAGGGCGCCTGCAGT
CGCTCAGCCTCAGGGACTTACCCATTGAGTCTCTGCCTAGGAGCCTTGGC
GGCCTGGAAGCTCTAACGTGCCTTCAGGTGGAATACTTTAGTGCCTCACA
CTCCCTGCCTGACACCATAGGCGACCTGCATGCGTTGACGCAGCTGTCAC
TCAATGAGTGCGGCTTGGTCGCCCTGCCCGACTCGATTTGCCGCCTCTCA
GCGGTCACAAAGCTCAGTCTCACGAGCTGCGAACAGCTGGTAGCGCTGCC
AGAGCGCCTGGGCGACATGCGCGCTCTGACGCAGCTCAATCTGTGGTACT
GCATGGCGCTGACCGCTCTGCCAGACAGCATCTGCGACCTGCCATCACTC
ATGGCGCTCGAAATCAACACCTGCACGCACCTTGCGAGGCTGCCGGACCA
CATCGGCAAACTTACGACGCTACGCAAGCTGGACGTCACAGCTTGCAATG
AGCTGCTCGATCGAGCACCGGACTCGCTAAAGTGGGTGAATTGGTGGGTC
GAGATTGAGTACGACAATTGGTGA
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protein sequence of jgi.p|Trimin1|167154

>Trimin1|167154|e_gw1.48.31.1 ID=Trimin1|167154|e_gw1.48.31.1|Name=jgi.p|Trimin1|167154|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=358bp
MPRALQELRIAECDLSSVLPQLHALIRFTNAGPQADALTLVKSISASSTL
SLLPTCFGGLSALTVLDLTNCAELDSLPDSICDLASLTTLRLCNFAGLTF
LPDRISDLSALRDLCLHTCPQLTALPQTMSNLTSLTHLELARVAVTSLPD
RLGDLAALTKLSVRNCDVLMTVPDSIGTLGRLQSLSLRDLPIESLPRSLG
GLEALTCLQVEYFSASHSLPDTIGDLHALTQLSLNECGLVALPDSICRLS
AVTKLSLTSCEQLVALPERLGDMRALTQLNLWYCMALTALPDSICDLPSL
MALEINTCTHLARLPDHIGKLTTLRKLDVTACNELLDRAPDSLKWVNWWV
EIEYDNW*
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mRNA from alignment at Contig_48:788573..789646+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12629 ID=mRNA_12629|Name=jgi.p|Trimin1|167154|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1074bp|location=Sequence derived from alignment at Contig_48:788573..789646+ (Tribonema minus UTEX_B_3156 )
ATGCCGCGTGCGCTGCAGGAGCTGCGCATTGCAGAGTGCGACCTCAGCAG
CGTGCTGCCGCAGCTGCATGCGCTCATCCGATTTACAAATGCGGGCCCCC
AGGCAGATGCGCTGACGCTAGTCAAGTCTATCTCGGCAAGTTCCACCTTG
AGTCTCCTGCCGACTTGCTTTGGCGGTCTGTCAGCACTGACGGTTCTGGA
CCTTACCAACTGCGCAGAGCTAGATAGCCTACCCGACAGCATTTGTGATC
TGGCGTCACTGACAACGCTGCGGTTGTGCAACTTCGCCGGCCTGACATTT
TTACCGGATCGCATCAGCGACCTCAGTGCGTTAAGGGACCTTTGCCTGCA
CACATGTCCGCAGCTGACAGCCCTGCCGCAGACCATGAGCAATCTGACGT
CGCTGACTCACCTTGAATTGGCGAGGGTGGCGGTGACCAGTCTGCCGGAC
CGTCTTGGTGATCTGGCAGCGCTGACAAAGCTGTCGGTAAGGAACTGCGA
TGTCCTGATGACAGTGCCTGACTCCATCGGCACTCTAGGGCGCCTGCAGT
CGCTCAGCCTCAGGGACTTACCCATTGAGTCTCTGCCTAGGAGCCTTGGC
GGCCTGGAAGCTCTAACGTGCCTTCAGGTGGAATACTTTAGTGCCTCACA
CTCCCTGCCTGACACCATAGGCGACCTGCATGCGTTGACGCAGCTGTCAC
TCAATGAGTGCGGCTTGGTCGCCCTGCCCGACTCGATTTGCCGCCTCTCA
GCGGTCACAAAGCTCAGTCTCACGAGCTGCGAACAGCTGGTAGCGCTGCC
AGAGCGCCTGGGCGACATGCGCGCTCTGACGCAGCTCAATCTGTGGTACT
GCATGGCGCTGACCGCTCTGCCAGACAGCATCTGCGACCTGCCATCACTC
ATGGCGCTCGAAATCAACACCTGCACGCACCTTGCGAGGCTGCCGGACCA
CATCGGCAAACTTACGACGCTACGCAAGCTGGACGTCACAGCTTGCAATG
AGCTGCTCGATCGAGCACCGGACTCGCTAAAGTGGGTGAATTGGTGGGTC
GAGATTGAGTACGACAATTGGTGA
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Coding sequence (CDS) from alignment at Contig_48:788573..789646+

>mRNA_12629 ID=mRNA_12629|Name=jgi.p|Trimin1|167154|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1074bp|location=Sequence derived from alignment at Contig_48:788573..789646+ (Tribonema minus UTEX_B_3156 )
ATGCCGCGTGCGCTGCAGGAGCTGCGCATTGCAGAGTGCGACCTCAGCAG
CGTGCTGCCGCAGCTGCATGCGCTCATCCGATTTACAAATGCGGGCCCCC
AGGCAGATGCGCTGACGCTAGTCAAGTCTATCTCGGCAAGTTCCACCTTG
AGTCTCCTGCCGACTTGCTTTGGCGGTCTGTCAGCACTGACGGTTCTGGA
CCTTACCAACTGCGCAGAGCTAGATAGCCTACCCGACAGCATTTGTGATC
TGGCGTCACTGACAACGCTGCGGTTGTGCAACTTCGCCGGCCTGACATTT
TTACCGGATCGCATCAGCGACCTCAGTGCGTTAAGGGACCTTTGCCTGCA
CACATGTCCGCAGCTGACAGCCCTGCCGCAGACCATGAGCAATCTGACGT
CGCTGACTCACCTTGAATTGGCGAGGGTGGCGGTGACCAGTCTGCCGGAC
CGTCTTGGTGATCTGGCAGCGCTGACAAAGCTGTCGGTAAGGAACTGCGA
TGTCCTGATGACAGTGCCTGACTCCATCGGCACTCTAGGGCGCCTGCAGT
CGCTCAGCCTCAGGGACTTACCCATTGAGTCTCTGCCTAGGAGCCTTGGC
GGCCTGGAAGCTCTAACGTGCCTTCAGGTGGAATACTTTAGTGCCTCACA
CTCCCTGCCTGACACCATAGGCGACCTGCATGCGTTGACGCAGCTGTCAC
TCAATGAGTGCGGCTTGGTCGCCCTGCCCGACTCGATTTGCCGCCTCTCA
GCGGTCACAAAGCTCAGTCTCACGAGCTGCGAACAGCTGGTAGCGCTGCC
AGAGCGCCTGGGCGACATGCGCGCTCTGACGCAGCTCAATCTGTGGTACT
GCATGGCGCTGACCGCTCTGCCAGACAGCATCTGCGACCTGCCATCACTC
ATGGCGCTCGAAATCAACACCTGCACGCACCTTGCGAGGCTGCCGGACCA
CATCGGCAAACTTACGACGCTACGCAAGCTGGACGTCACAGCTTGCAATG
AGCTGCTCGATCGAGCACCGGACTCGCTAAAGTGGGTGAATTGGTGGGTC
GAGATTGAGTACGACAATTGGTGA
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