mRNA_12616 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349762
Unique NamemRNA_12616
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349762 vs. uniprot
Match: A0A835YSV8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV8_9STRA)

HSP 1 Score: 234 bits (597), Expect = 3.230e-77
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 3 
Query:    3 ERCXXXXXXXXXXXXXYREAARQQRSGSRCARACAHAAASLPHSGPARARARIRGAEHSCSSARRAHRGAGHLLARAAAATAAGLPARGRRRRAGVHEEGXXXVEGGEGAQPPGGRGARRTVVVFRPVSRGVGDARGGLPGGDC 434
            ERCXXXXXXXXXXXXXYREAARQQRSGSRCARACAHAAASLPHSGPARARARIRGAEHSCSSARRAHRGAGHLLARAAAATAAGLPARGRRRRAGVHEEGXXXVEGGEGAQPPGGRGARRTVVVFRPVSRGVGDARGGLPGGDC
Sbjct:    1 ERCXXXXXXXXXXXXXYREAARQQRSGSRCARACAHAAASLPHSGPARARARIRGAEHSCSSARRAHRGAGHLLARAAAATAAGLPARGRRRRAGVHEEGXXXVEGGEGAQPPGGRGARRTVVVFRPVSRGVGDARGGLPGGDC 144
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349762 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YSV8_9STRA3.230e-77100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:586381..586965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349762|estExt_Genemark1.C_Ctg_480058
Hectar predicted targeting categoryother localisation
TranscriptId350084
TrackFilteredModels1
ProteinId349762
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349762gene_12616Tribonema minus UTEX_B_3156 geneContig_48 586381..586965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349762Trimin1|349762|estExt_Genemark1.C_Ctg_480058Tribonema minus UTEX_B_3156 polypeptideContig_48 586381..586963 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12616_3exon_12616_3Tribonema minus UTEX_B_3156 exonContig_48 586381..586609 -
exon_12616_2exon_12616_2Tribonema minus UTEX_B_3156 exonContig_48 586664..586805 -
exon_12616_1exon_12616_1Tribonema minus UTEX_B_3156 exonContig_48 586903..586965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12616CDS_12616Tribonema minus UTEX_B_3156 CDSContig_48 586903..586963 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12616UTR5_12616Tribonema minus UTEX_B_3156 five_prime_UTRContig_48 586964..586965 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12616 ID=mRNA_12616|Name=jgi.p|Trimin1|349762|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=434bp|location=Sequence derived from alignment at Contig_48:586381..586965- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCTGCTGCTCCTCC
TATCGGGAAGCCGCGCGTCAGCAGCGCTCAGGCTCTCGTTGCGCGCGCGC
GTGCGCACACGCCGCCGCGTCGCTGCCTCATTCCGGCCCCGCGCGTGCGC
GTGCGCGCATTCGTGGCGCTGAGCACAGCTGCAGCAGCGCTCGGCGCGCG
CACCGCGGCGCTGGCCACCTACTGGCGCGCGCCGCCGCTGCCACCGCCGC
TGGGCTGCCTGCGCGCGGCCGGCGGCGGCGCGCAGGGGTTCACGAGGAAG
GGGGCGGGGGTGTTGAGGGGGGTGAGGGGGCCCAACCACCAGGGGGTCGC
GGAGCGCGACGGACAGTCGTCGTCTTCCGTCCCGTGAGCAGAGGAGTTGG
GGATGCGCGGGGAGGGCTGCCAGGGGGAGACTGC
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protein sequence of jgi.p|Trimin1|349762

>Trimin1|349762|estExt_Genemark1.C_Ctg_480058 ID=Trimin1|349762|estExt_Genemark1.C_Ctg_480058|Name=jgi.p|Trimin1|349762|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
ERCCCCCCCCLCCCSSYREAARQQRSGSRCARACAHAAASLPHSGPARAR
ARIRGAEHSCSSARRAHRGAGHLLARAAAATAAGLPARGRRRRAGVHEEG
GGGVEGGEGAQPPGGRGARRTVVVFRPVSRGVGDARGGLPGGDC
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mRNA from alignment at Contig_48:586381..586965-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12616 ID=mRNA_12616|Name=jgi.p|Trimin1|349762|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_48:586381..586965- (Tribonema minus UTEX_B_3156 )
ATGAGCGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCTGCTGCTCCTCC
TATCGGGAAGCCGGTGAGGATGCACCGCAAGCACTAAGTAGTCGAGAGAA
TGGGTGGAGCGCTAGTGCTGCACGCGTGCAGGGCGCCGAACGCTGCTGCT
GCGGCCGTAGCGCGTCAGCAGCGCTCAGGCTCTCGTTGCGCGCGCGCGTG
CGCACACGCCGCCGCGTCGCTGCCTCATTCCGGCCCCGCGCGTGCGCGTG
CGCGCATTCGTGGCGCTGAGCACAGCTGCAGCAGCGCTCGGCGCGCGCAC
CGGTGAGCGCTGCTGGTCACACATAACATCATTGAAGCTAAGCACTGCTG
CTGCAGCGGCGCTGGCCACCTACTGGCGCGCGCCGCCGCTGCCACCGCCG
CTGGGCTGCCTGCGCGCGGCCGGCGGCGGCGCGCAGGGGTTCACGAGGAA
GGGGGCGGGGGTGTTGAGGGGGGTGAGGGGGCCCAACCACCAGGGGGTCG
CGGAGCGCGACGGACAGTCGTCGTCTTCCGTCCCGTGAGCAGAGGAGTTG
GGGATGCGCGGGGAGGGCTGCCAGGGGGAGACTGC
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Coding sequence (CDS) from alignment at Contig_48:586381..586965-

>mRNA_12616 ID=mRNA_12616|Name=jgi.p|Trimin1|349762|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_48:586381..586965- (Tribonema minus UTEX_B_3156 )
GAGCGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCTGCTGCTCCTCCTA
TCGGGAAGCCGCGCGTCAGCAGCGCTCAGGCTCTCGTTGCGCGCGCGCGT
GCGCACACGCCGCCGCGTCGCTGCCTCATTCCGGCCCCGCGCGTGCGCGT
GCGCGCATTCGTGGCGCTGAGCACAGCTGCAGCAGCGCTCGGCGCGCGCA
CCGCGGCGCTGGCCACCTACTGGCGCGCGCCGCCGCTGCCACCGCCGCTG
GGCTGCCTGCGCGCGGCCGGCGGCGGCGCGCAGGGGTTCACGAGGAAGGG
GGCGGGGGTGTTGAGGGGGGTGAGGGGGCCCAACCACCAGGGGGTCGCGG
AGCGCGACGGACAGTCGTCGTCTTCCGTCCCGTGAGCAGAGGAGTTGGGG
ATGCGCGGGGAGGGCTGCCAGGGGGAGACTGC
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