mRNA_12585 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167158
Unique NamemRNA_12585
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A836CC11_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC11_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.900e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWLTETAPVA 294
            VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWLTETAPVA
Sbjct:    1 VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWLTETAPVA 98
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A836CDI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.500e-29
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDE 192
            VLVHTVDGFQGGERDIIIMSFVRAS QRGVGFVADARRLNVAVTR  HSVIMLGHCATLL GD+
Sbjct: 4354 VLVHTVDGFQGGERDIIIMSFVRASEQRGVGFVADARRLNVAVTRAPHSVIMLGHCATLLGGDD 4417
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A836CL72_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL72_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.580e-27
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    4 LVHTVDGFQGGERDIIIMSFVRA---SAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWL 273
            LVHTVDGFQGGERD+II+SFVRA       GVGF+A  RRLNVAVTR RH+VIMLGH ATL  G   C V  L+ DA+ R  ++  +ELE W+
Sbjct:  549 LVHTVDGFQGGERDVIIISFVRARDGGGGGGVGFLAHERRLNVAVTRARHAVIMLGHAATLSSGGSGCRVAKLIADARRRGAIRQGSELERWV 641
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A2R5GNS5_9STRA (Regulator of nonsense transcripts 1-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNS5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-17
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVK 246
            V+V TVD FQG E  ++I+SFVRA+ +  VGF++D RRLNVA+TR +HS+I++G   TL R D+ C +R L+ DA++RS  K
Sbjct: 1173 VVVSTVDSFQGSEASVVILSFVRANREGRVGFLSDLRRLNVALTRAKHSLILVGCGETLSRADDSC-MRDLIKDARDRSVYK 1253
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A835W2N5_9CHLO (UvrD-like helicase ATP-binding domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W2N5_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 1.960e-17
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDE-------DCSVRGLVVDAQERSRVKP 249
            V V +VDGFQG E+D+I++S VRA++   VGF ADARRLNVA TR RH +++L H +TL R  E       D   RGL++ A+E+  ++P
Sbjct: 1141 VAVRSVDGFQGQEKDVIVLSLVRANSAGYVGFTADARRLNVAATRARHGLVVLAHVSTLRRRSELLRAFLDDAQRRGLLLRAEEQPALEP 1230
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A0S7XY88_9COXI (Uncharacterized protein n=1 Tax=Coxiella sp. DG_40 TaxID=1703354 RepID=A0A0S7XY88_9COXI)

HSP 1 Score: 85.5 bits (210), Expect = 2.600e-17
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    7 VHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAEL 261
            +HTVDGFQG ERD II+SFVRA+ +  +GF+ D RRLNVA+TR + ++IMLG+ ATL R   D S+  L+ D + R+ + P  EL
Sbjct:  850 IHTVDGFQGDERDFIIISFVRANPKGRIGFLMDFRRLNVAITRAKLALIMLGNVATLRRKKSDVSL--LIDDMERRNLLWPENEL 932
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A1E1XVN8_9ACAR (Putative splicing endonuclease positive effector sen1 (Fragment) n=1 Tax=Amblyomma sculptum TaxID=1581419 RepID=A0A1E1XVN8_9ACAR)

HSP 1 Score: 83.2 bits (204), Expect = 4.900e-17
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    7 VHTVDGFQGGERDIIIMSFVRASAQRG-VGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVA 255
            V+TVDGFQG ERD+I++S VRA   RG +GFVADARRLNVA+TR R ++ + GH  +L   +E    R L+ DA ER +VK ++
Sbjct:  211 VNTVDGFQGQERDVIVLSCVRAHNPRGCIGFVADARRLNVAITRARKALFICGHLDSLKDTEE---WRALISDAHERCKVKDIS 291
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A812PGM3_9DINO (Sen1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812PGM3_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 8.880e-17
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    7 VHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWLTETAPV 291
            VHTVD FQG E +++++SFVRA+AQR +GF+++ RRLNVA+TR +HS+I+  + A LL+G     V  L  DA  R  +    +L   L+ T+ V
Sbjct:  621 VHTVDSFQGSEAEVVLLSFVRANAQRRLGFLSEFRRLNVALTRAKHSLILFANAA-LLKGSFSDDVTALFEDASRRKLIWKEEQLSQLLSSTSGV 714
[Close]
BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: A0A812GHN6_9DINO (Sen1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GHN6_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 8.920e-17
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCS--VRGLVVDAQERSRVKPVAELEAWLTET 282
            V VHTVD FQG E +++++SFVRA+AQR +GF+++ RRLNVA+TR +HS+I+  + ATLL+G+   S  V  L  DA  R  +    EL   L+ T
Sbjct:  700 VEVHTVDSFQGSEAEVVLLSFVRANAQRRLGFLSEFRRLNVALTRAKHSLIVFAN-ATLLKGERSLSDDVAALFEDASRRKLIWREDELNRLLSPT 794
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BLAST of jgi.p|Trimin1|167158 vs. uniprot
Match: UPI001B86E72E (SEN1 N terminal-domain-containing protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B86E72E)

HSP 1 Score: 84.0 bits (206), Expect = 9.180e-17
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   10 HTVDGFQGGERDIIIMSFVRAS-AQRGVGFVADARRLNVAVTRGRHSVIMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWLTET 282
            HTVDGFQG E+D+II+S VRA    + VGF++D RR+NVA+TR R S+ +LGH  TL R DE  S R +V DA+ERS +   A++  + T+T
Sbjct: 1682 HTVDGFQGQEKDVIILSCVRAGPGVQSVGFLSDVRRMNVAMTRARSSLFILGHAPTLERSDE--SWRKVVQDARERSLLAE-ADVNFFTTQT 1770
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167158 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC11_9STRA2.900e-63100.00AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CDI4_9STRA6.500e-2992.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CL72_9STRA8.580e-2761.29P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2R5GNS5_9STRA1.400e-1752.44Regulator of nonsense transcripts 1-like n=1 Tax=H... [more]
A0A835W2N5_9CHLO1.960e-1748.89UvrD-like helicase ATP-binding domain-containing p... [more]
A0A0S7XY88_9COXI2.600e-1752.94Uncharacterized protein n=1 Tax=Coxiella sp. DG_40... [more]
A0A1E1XVN8_9ACAR4.900e-1753.57Putative splicing endonuclease positive effector s... [more]
A0A812PGM3_9DINO8.880e-1745.26Sen1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812GHN6_9DINO8.920e-1747.92Sen1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
UPI001B86E72E9.180e-1752.17SEN1 N terminal-domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:165675..165971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167158|e_gw1.48.117.1
BRITEko00000,ko01000,ko03021
KEGG koko:K10706
GOsGO:0000003,GO:0003006,GO:0006935,GO:0007154,GO:0007275,GO:0008150,GO:0009553,GO:0009605,GO:0009856,GO:0009875,GO:0009987,GO:0010183,GO:0022414,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0044706,GO:0048229,GO:0048856,GO:0048868,GO:0050896,GO:0050918,GO:0051704
DescriptionAAA domain
COG categoryL
Max annot lvl35493|Streptophyta
EggNOG OGsCOG1112@1|root,KOG1801@2759|Eukaryota,37Q5R@33090|Viridiplantae,3GCMV@35493|Streptophyta,44B5T@71274|asterids
Evalue3.71e-17
Seed ortholog4096.XP_009783830.1
Hectar predicted targeting categoryother localisation
TranscriptId167480
TrackFilteredModels1
ProteinId167158
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167158gene_12585Tribonema minus UTEX_B_3156 geneContig_48 165675..165971 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12585_1exon_12585_1Tribonema minus UTEX_B_3156 exonContig_48 165675..165971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12585CDS_12585Tribonema minus UTEX_B_3156 CDSContig_48 165675..165971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167158Trimin1|167158|e_gw1.48.117.1Tribonema minus UTEX_B_3156 polypeptideContig_48 165675..165971 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12585 ID=mRNA_12585|Name=jgi.p|Trimin1|167158|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_48:165675..165971- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCCTGGTGCACACTGTCGACGGCTTCCAGGGCGGCGAGCGTGACATCAT
CATTATGTCATTTGTGCGCGCCAGCGCTCAGCGCGGCGTCGGTTTCGTTG
CGGATGCGCGGAGGCTCAACGTGGCAGTCACGCGCGGGCGCCACTCAGTG
ATCATGCTGGGGCACTGCGCGACGCTGCTGCGGGGGGATGAGGACTGCAG
CGTGAGGGGCCTTGTAGTAGATGCTCAGGAACGGAGCAGGGTGAAACCGG
TCGCGGAGCTGGAGGCGTGGCTCACGGAGACGGCACCAGTCGCTTGA
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protein sequence of jgi.p|Trimin1|167158

>Trimin1|167158|e_gw1.48.117.1 ID=Trimin1|167158|e_gw1.48.117.1|Name=jgi.p|Trimin1|167158|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
VLVHTVDGFQGGERDIIIMSFVRASAQRGVGFVADARRLNVAVTRGRHSV
IMLGHCATLLRGDEDCSVRGLVVDAQERSRVKPVAELEAWLTETAPVA*
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mRNA from alignment at Contig_48:165675..165971-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12585 ID=mRNA_12585|Name=jgi.p|Trimin1|167158|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_48:165675..165971- (Tribonema minus UTEX_B_3156 )
GTCCTGGTGCACACTGTCGACGGCTTCCAGGGCGGCGAGCGTGACATCAT
CATTATGTCATTTGTGCGCGCCAGCGCTCAGCGCGGCGTCGGTTTCGTTG
CGGATGCGCGGAGGCTCAACGTGGCAGTCACGCGCGGGCGCCACTCAGTG
ATCATGCTGGGGCACTGCGCGACGCTGCTGCGGGGGGATGAGGACTGCAG
CGTGAGGGGCCTTGTAGTAGATGCTCAGGAACGGAGCAGGGTGAAACCGG
TCGCGGAGCTGGAGGCGTGGCTCACGGAGACGGCACCAGTCGCTTGA
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Coding sequence (CDS) from alignment at Contig_48:165675..165971-

>mRNA_12585 ID=mRNA_12585|Name=jgi.p|Trimin1|167158|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_48:165675..165971- (Tribonema minus UTEX_B_3156 )
GTCCTGGTGCACACTGTCGACGGCTTCCAGGGCGGCGAGCGTGACATCAT
CATTATGTCATTTGTGCGCGCCAGCGCTCAGCGCGGCGTCGGTTTCGTTG
CGGATGCGCGGAGGCTCAACGTGGCAGTCACGCGCGGGCGCCACTCAGTG
ATCATGCTGGGGCACTGCGCGACGCTGCTGCGGGGGGATGAGGACTGCAG
CGTGAGGGGCCTTGTAGTAGATGCTCAGGAACGGAGCAGGGTGAAACCGG
TCGCGGAGCTGGAGGCGTGGCTCACGGAGACGGCACCAGTCGCTTGA
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