mRNA_12583 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150878
Unique NamemRNA_12583
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A836CBA4_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA4_9STRA)

HSP 1 Score: 527 bits (1358), Expect = 4.200e-189
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHPATDVTAAVTTPHLVQALAG 807
            VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHPATDVTAAVTTPHLVQALAG
Sbjct:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHPATDVTAAVTTPHLVQALAG 269          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: D8LTD0_ECTSI (IPT/TIG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.640e-48
Identity = 107/272 (39.34%), Postives = 144/272 (52.94%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVF--------------------------------SASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGG 720
            VLAWG G +GQLG G      + P+ IP L+  +V  V+CG+ HSAAVT  G+++TWGRG EGQLGH +S+    +      GVQL P+ V  FL  KK +   A ++CG NFTLV+ + GE WAFG G  GQLG GR T    P + + + P TG   V VAAGW+HALA +  G++ +WG N +G LG+GD + R  P                                     +A     ++HA G  S AL+  G ++ WG   +GG
Sbjct:  107 VLAWGSGGQGQLGIGTITLESELPKTIPALSAYRVLQVACGAQHSAAVTSYGDLFTWGRGTEGQLGH-ASRHLPPELNDAITGVQLRPKPVPAFLATKKRQRPVAGVSCGANFTLVVTRAGEAWAFGGGAMGQLGIGRVTSVGVPKMVMPSCPATGEPFVEVAAGWSHALARTSGGRILSWGFNALGALGLGDHRTRFLPEAVPLDGWQKQXXXXXXXXXXXXXCGSNPLNNPPAAKTARITAVKVHACGNCSGALSADGELFTWGCGRAGG 377          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: T0QRN5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QRN5_SAPDV)

HSP 1 Score: 160 bits (404), Expect = 7.840e-41
Identity = 96/200 (48.00%), Postives = 116/200 (58.00%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
            + AWG G  GQLG G A     TPR +  L G    SV+CG  HSAAVT +G +YTWGR  EGQLGH SS     +   Q NGV   P+ V  FL     K     IACG+  +++L   G+V+A GEG  GQLG GR T+   PLL L    E     V VA GWAHALAL+  G+++AWG N  GQLG+ DTK+R  P
Sbjct:   92 LYAWGVGESGQLGLGGAITSTKTPRKLRELPGVAFTSVACGGFHSAAVTSTGALYTWGRNLEGQLGHASSLLSTSENETQ-NGVFFHPKHVDAFL-----KKRCKQIACGDKLSVILTDAGDVYACGEGQVGQLGQGRCTKQFLPLLTLLG--EKTDPFVQVACGWAHALALTSSGRLFAWGFNQYGQLGLDDTKSRFVP 283          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A067BZA3_SAPPC (IPT/TIG domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BZA3_SAPPC)

HSP 1 Score: 154 bits (389), Expect = 1.580e-39
Identity = 92/200 (46.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
            + AWG G  GQLG G A     +PR +  L G    S++CG  HSAAVT +G +YTWGR  EGQLGH SS     D   Q NGV   P+ V  FL     K     IACG+ F+++L   G+V+A GEG  GQLG G       PLL L    +       VA GWAHALAL+  G+++AWG N  GQLG+ DTK+R  P
Sbjct:   91 LYAWGAGDSGQLGLGGAITSTKSPRKLRELPGLAFTSIACGGYHSAAVTSTGALYTWGRNLEGQLGHASSLFSTSDNETQ-NGVFFHPKHVDAFL-----KKRCKHIACGDKFSIILTDAGDVYACGEGQVGQLGQGTAASQFLPLLTLLG--DKADPFAQVACGWAHALALTASGRLFAWGFNQYGQLGLDDTKSRFFP 282          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A6G0WB17_9STRA (IPT/TIG domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB17_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.460e-38
Identity = 89/200 (44.50%), Postives = 118/200 (59.00%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
            +  WG+G  GQLG G   +  D P  +         SV+CG  H+AA++  G++YTWGR FEGQLGH S   Q  +   Q NGV   P+ V+ FL  K        +ACG +FT VL + G+++AFGEG  GQLG GR T+S  P   L +   T    V +A GWAHALA+S+ G+++AWG N  GQLG+GDT +R  P
Sbjct:   91 IFVWGDGEFGQLGMGATVSSSDRPLKLRQSNHLTFTSVACGGYHTAAISNGGDLYTWGRNFEGQLGHSSQAAQFGECEVQ-NGVFHHPKHVSAFLNTK-----CHQVACGEHFTAVLSRQGDIYAFGEGQSGQLGIGRCTKSFIPRKTLPSIDATD-PFVEIACGWAHALAVSKSGRLFAWGFNQYGQLGLGDTTSRFLP 283          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A6A4Z4J8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z4J8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.700e-38
Identity = 92/203 (45.32%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPAC---QANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
            +  WG+ + GQLG G      D P  +  L     +SV+CG  H+AA++ SG +YTWGR FEGQLGH S       PAC   + NGV   P+ V  FL  K        +ACG+ FT+VL   GE+++FGEG  GQLG+GR T+  +P L LA S       V +A GWAH LA++  G++Y+WG N  GQLGVGDTK R  P
Sbjct:   95 LFVWGDAQYGQLGLGGTITTKDHPSRLSQLDHIVFSSVACGGYHTAALSNSGGLYTWGRNFEGQLGHSSVIA----PACVNEKLNGVFHRPKHVAAFLNEK-----CKQVACGDKFTVVLTVPGEIYSFGEGQSGQLGTGRCTKVFQPKLTLA-SDAPDDIFVEIACGWAHTLAITRAGRLYSWGFNQYGQLGVGDTKTRFLP 287          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A024TG72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG72_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.820e-38
Identity = 95/223 (42.60%), Postives = 129/223 (57.85%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPAC----QANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAA-SPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALG 654
            V  WG+GR GQLG G      + P  I  L      S++CG  H+AA++ SG++YTWGR FEGQLGH S+       +C    + NGV   P+ V   L  K        +ACG+ FT+ L   G+++AFGEG  GQLG+GR T+  +P LAL + SP+     V +A GWAH LA+++ G++++WG N  GQLG  DTK R TP + V  A   VA + A G
Sbjct:   91 VFVWGDGRFGQLGLGGTIVAKEHPVKIGQLDHLTFKSIACGGFHTAALSESGDLYTWGRNFEGQLGHTSASA-----SCAVNEKLNGVFHRPKHVAPLLNKK-----CKQVACGDKFTVALTVHGDIYAFGEGQAGQLGTGRCTKVLQPTLALTSESPDD--PFVEIACGWAHTLAMTQTGRLFSWGFNQYGQLGASDTKTRFTPEQVV--ACVPVAHVFAGG 299          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A1V9Z9H8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9H8_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.030e-37
Identity = 90/200 (45.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
            +  WG G  GQLG G A      PR +  L     AS++CG  HSAAVT +G +YTWGR  EGQLGH S      +   + NGV   P+ V  FL     K     IACG+ F+++L   G+V+A GEG  GQLG GR T+   P++ L      G   V VA GWAHALAL+  G+++AWG N  GQLG+ DTK+R  P
Sbjct:   92 LYGWGSGEFGQLGLGGAILTAKAPRKLRELPCASFASIACGGYHSAAVTTTGALYTWGRNMEGQLGHASPLLSTAENEVK-NGVFHHPKHVDDFL-----KKRCKQIACGDKFSVMLTDSGDVYACGEGQTGQLGQGRCTKQFLPMVTLLGDKTDG--FVQVACGWAHALALTASGRLFAWGFNQYGQLGLDDTKSRFFP 283          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A1V9YP54_9STRA (IPT/TIG domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YP54_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.880e-37
Identity = 90/200 (45.00%), Postives = 116/200 (58.00%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
            + AWG+G+ GQLG G    +   P+ I  +      S++ G  HSAA+T SG +Y WGR FEGQLGH      ++    +  GV   P+ V  FL     K     IACG+ F+++L + GEV+A GEG  GQLG GR T+   P+L L A  E     V VA GWAHALAL+  G+++AWG NH GQLGV DTK R  P
Sbjct:   86 LFAWGDGQYGQLGLGGNVNQAKNPQKIREIPQAHFTSIASGGYHSAAITDSGSLYMWGRNFEGQLGHAMHCMTREQNEAKY-GVVHHPKHVDDFL-----KKLCKQIACGDKFSIILTENGEVYACGEGQMGQLGQGRCTKLMHPMLTLLA--EKHDLFVQVACGWAHALALTGSGRLFAWGFNHYGQLGVDDTKTRFFP 277          
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A418B883_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B883_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.100e-36
Identity = 94/230 (40.87%), Postives = 130/230 (56.52%), Query Frame = 1
Query:    1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPAC----QANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAA-SPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALT 675
            V  WG+GR GQLG G      + P             ++CG  H+AA++ SG++YTWGR FEGQLGH S+       +C    + NGV   P+ V   L  K        +ACG+ FT+ L   G+++AFGEG  GQLG+GR T+  +P LAL + SP+     V +A GWAH LA+++ G++++WG N  GQLG  DTK R TP + V  A   VA + A G  S A++
Sbjct:   52 VFVWGDGRFGQLGLGGTIVAKEHP-------------IACGGFHTAALSESGDLYTWGRNFEGQLGHSSASA-----SCAVNEKLNGVFHRPKHVAPLLNKK-----CKQVACGDKFTVALIVHGDIYAFGEGQAGQLGTGRCTKVLQPTLALTSESPDD--PFVEIACGWAHTLAMTQTGRLFSWGFNQYGQLGASDTKTRFTPEQVV--ACVPVAHVFAGGNYSAAIS 254          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBA4_9STRA4.200e-189100.00Regulator of chromosome condensation 1/beta-lactam... [more]
D8LTD0_ECTSI2.640e-4839.34IPT/TIG domain-containing protein n=2 Tax=Ectocarp... [more]
T0QRN5_SAPDV7.840e-4148.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067BZA3_SAPPC1.580e-3946.00IPT/TIG domain-containing protein n=1 Tax=Saproleg... [more]
A0A6G0WB17_9STRA1.460e-3844.50IPT/TIG domain-containing protein n=1 Tax=Aphanomy... [more]
A0A6A4Z4J8_9STRA2.700e-3845.32Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024TG72_9STRA6.820e-3842.60Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Z9H8_9STRA4.030e-3745.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9YP54_9STRA5.880e-3745.00IPT/TIG domain-containing protein n=1 Tax=Thrausto... [more]
A0A418B883_9STRA1.100e-3640.87Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:126503..127309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150878|gw1.48.107.1
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04120,map04120
KEGG koko:K10614,ko:K10615
EC2.3.2.26
Descriptionubiquitin-protein transferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5021@1|root,KOG0941@2759|Eukaryota
Evalue4.32e-49
Seed ortholog2880.D8LTD0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-12_006100.1
TranscriptId151200
TrackFilteredModels1
ProteinId150878
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150878gene_12583Tribonema minus UTEX_B_3156 geneContig_48 126503..127309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12583_1exon_12583_1Tribonema minus UTEX_B_3156 exonContig_48 126503..127309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12583CDS_12583Tribonema minus UTEX_B_3156 CDSContig_48 126503..127309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150878Trimin1|150878|gw1.48.107.1Tribonema minus UTEX_B_3156 polypeptideContig_48 126503..127309 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12583 ID=mRNA_12583|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_48:126503..127309- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTGGCGTGGGGAGAGGGAAGAGAAGGGCAGCTGGGCAGTGGCAAGGC
GCATGCGCGTTGGGATACTCCGCGAGTCATCCCTGGCCTGGCCGGCAAGC
AGGTGGCGTCGGTATCCTGCGGCAGCGCTCACAGCGCAGCCGTCACCTGC
AGCGGCGAGGTGTACACCTGGGGCAGGGGCTTCGAAGGCCAGCTAGGCCA
CGGCAGCTCCAAGACGCAACAAGACGACCCTGCGTGCCAAGCAAATGGCG
TACAGCTAACGCCGCGCCTGGTCACCCACTTCCTGCCTGCCAAGAAGCCC
AAAATTGCCGCTGCCGCAATTGCCTGCGGCAACAACTTCACCTTGGTGCT
CGGCAAGGGTGGTGAAGTTTGGGCCTTCGGCGAAGGCGGTTGCGGCCAGC
TGGGCTCGGGGCGCAGAACTCAATCGGCTCGGCCGCTGCTGGCACTAGCT
GCAAGCCCAGAAACAGGGGGCGCAATGGTGGCGGTGGCAGCGGGCTGGGC
TCACGCTCTTGCCCTATCAGAGCGGGGGCAAGTATATGCATGGGGACTGA
ATCATGTGGGGCAGTTGGGGGTGGGGGACACAAAAGCGCGGCACACGCCA
ACACGGACAGTGTTTTCCGCATCGGCGGAGGTGGCGGAGATTCACGCGCT
AGGCGGTCGCAGCTGTGCGCTGACGCGTGGCGGCAACGTGTACGCATGGG
GGGCAGTCAGCAGCGGCGGCAGCAGCAGCAGCAGTAGCAACGCGCACCCG
GCAACGGACGTCACCGCAGCAGTGACCACACCGCACCTAGTACAAGCGCT
GGCCGGC
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protein sequence of jgi.p|Trimin1|150878

>Trimin1|150878|gw1.48.107.1 ID=Trimin1|150878|gw1.48.107.1|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTC
SGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKP
KIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALA
ASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP
TRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHP
ATDVTAAVTTPHLVQALAG
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mRNA from alignment at Contig_48:126503..127309-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12583 ID=mRNA_12583|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_48:126503..127309- (Tribonema minus UTEX_B_3156 )
GTGCTGGCGTGGGGAGAGGGAAGAGAAGGGCAGCTGGGCAGTGGCAAGGC GCATGCGCGTTGGGATACTCCGCGAGTCATCCCTGGCCTGGCCGGCAAGC AGGTGGCGTCGGTATCCTGCGGCAGCGCTCACAGCGCAGCCGTCACCTGC AGCGGCGAGGTGTACACCTGGGGCAGGGGCTTCGAAGGCCAGCTAGGCCA CGGCAGCTCCAAGACGCAACAAGACGACCCTGCGTGCCAAGCAAATGGCG TACAGCTAACGCCGCGCCTGGTCACCCACTTCCTGCCTGCCAAGAAGCCC AAAATTGCCGCTGCCGCAATTGCCTGCGGCAACAACTTCACCTTGGTGCT CGGCAAGGGTGGTGAAGTTTGGGCCTTCGGCGAAGGCGGTTGCGGCCAGC TGGGCTCGGGGCGCAGAACTCAATCGGCTCGGCCGCTGCTGGCACTAGCT GCAAGCCCAGAAACAGGGGGCGCAATGGTGGCGGTGGCAGCGGGCTGGGC TCACGCTCTTGCCCTATCAGAGCGGGGGCAAGTATATGCATGGGGACTGA ATCATGTGGGGCAGTTGGGGGTGGGGGACACAAAAGCGCGGCACACGCCA ACACGGACAGTGTTTTCCGCATCGGCGGAGGTGGCGGAGATTCACGCGCT AGGCGGTCGCAGCTGTGCGCTGACGCGTGGCGGCAACGTGTACGCATGGG GGGCAGTCAGCAGCGGCGGCAGCAGCAGCAGCAGTAGCAACGCGCACCCG GCAACGGACGTCACCGCAGCAGTGACCACACCGCACCTAGTACAAGCGCT GGCCGGC
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Coding sequence (CDS) from alignment at Contig_48:126503..127309-

>mRNA_12583 ID=mRNA_12583|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_48:126503..127309- (Tribonema minus UTEX_B_3156 )
GTGCTGGCGTGGGGAGAGGGAAGAGAAGGGCAGCTGGGCAGTGGCAAGGC
GCATGCGCGTTGGGATACTCCGCGAGTCATCCCTGGCCTGGCCGGCAAGC
AGGTGGCGTCGGTATCCTGCGGCAGCGCTCACAGCGCAGCCGTCACCTGC
AGCGGCGAGGTGTACACCTGGGGCAGGGGCTTCGAAGGCCAGCTAGGCCA
CGGCAGCTCCAAGACGCAACAAGACGACCCTGCGTGCCAAGCAAATGGCG
TACAGCTAACGCCGCGCCTGGTCACCCACTTCCTGCCTGCCAAGAAGCCC
AAAATTGCCGCTGCCGCAATTGCCTGCGGCAACAACTTCACCTTGGTGCT
CGGCAAGGGTGGTGAAGTTTGGGCCTTCGGCGAAGGCGGTTGCGGCCAGC
TGGGCTCGGGGCGCAGAACTCAATCGGCTCGGCCGCTGCTGGCACTAGCT
GCAAGCCCAGAAACAGGGGGCGCAATGGTGGCGGTGGCAGCGGGCTGGGC
TCACGCTCTTGCCCTATCAGAGCGGGGGCAAGTATATGCATGGGGACTGA
ATCATGTGGGGCAGTTGGGGGTGGGGGACACAAAAGCGCGGCACACGCCA
ACACGGACAGTGTTTTCCGCATCGGCGGAGGTGGCGGAGATTCACGCGCT
AGGCGGTCGCAGCTGTGCGCTGACGCGTGGCGGCAACGTGTACGCATGGG
GGGCAGTCAGCAGCGGCGGCAGCAGCAGCAGCAGTAGCAACGCGCACCCG
GCAACGGACGTCACCGCAGCAGTGACCACACCGCACCTAGTACAAGCGCT
GGCCGGC
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