mRNA_12583 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A836CBA4_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA4_9STRA) HSP 1 Score: 527 bits (1358), Expect = 4.200e-189 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHPATDVTAAVTTPHLVQALAG 807
VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHPATDVTAAVTTPHLVQALAG
Sbjct: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGGSSSSSSNAHPATDVTAAVTTPHLVQALAG 269
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: D8LTD0_ECTSI (IPT/TIG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD0_ECTSI) HSP 1 Score: 181 bits (460), Expect = 2.640e-48 Identity = 107/272 (39.34%), Postives = 144/272 (52.94%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVF--------------------------------SASAEVAEIHALGGRSCALTRGGNVYAWGAVSSGG 720
VLAWG G +GQLG G + P+ IP L+ +V V+CG+ HSAAVT G+++TWGRG EGQLGH +S+ + GVQL P+ V FL KK + A ++CG NFTLV+ + GE WAFG G GQLG GR T P + + + P TG V VAAGW+HALA + G++ +WG N +G LG+GD + R P +A ++HA G S AL+ G ++ WG +GG
Sbjct: 107 VLAWGSGGQGQLGIGTITLESELPKTIPALSAYRVLQVACGAQHSAAVTSYGDLFTWGRGTEGQLGH-ASRHLPPELNDAITGVQLRPKPVPAFLATKKRQRPVAGVSCGANFTLVVTRAGEAWAFGGGAMGQLGIGRVTSVGVPKMVMPSCPATGEPFVEVAAGWSHALARTSGGRILSWGFNALGALGLGDHRTRFLPEAVPLDGWQKQXXXXXXXXXXXXXCGSNPLNNPPAAKTARITAVKVHACGNCSGALSADGELFTWGCGRAGG 377
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: T0QRN5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QRN5_SAPDV) HSP 1 Score: 160 bits (404), Expect = 7.840e-41 Identity = 96/200 (48.00%), Postives = 116/200 (58.00%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
+ AWG G GQLG G A TPR + L G SV+CG HSAAVT +G +YTWGR EGQLGH SS + Q NGV P+ V FL K IACG+ +++L G+V+A GEG GQLG GR T+ PLL L E V VA GWAHALAL+ G+++AWG N GQLG+ DTK+R P
Sbjct: 92 LYAWGVGESGQLGLGGAITSTKTPRKLRELPGVAFTSVACGGFHSAAVTSTGALYTWGRNLEGQLGHASSLLSTSENETQ-NGVFFHPKHVDAFL-----KKRCKQIACGDKLSVILTDAGDVYACGEGQVGQLGQGRCTKQFLPLLTLLG--EKTDPFVQVACGWAHALALTSSGRLFAWGFNQYGQLGLDDTKSRFVP 283
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A067BZA3_SAPPC (IPT/TIG domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BZA3_SAPPC) HSP 1 Score: 154 bits (389), Expect = 1.580e-39 Identity = 92/200 (46.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
+ AWG G GQLG G A +PR + L G S++CG HSAAVT +G +YTWGR EGQLGH SS D Q NGV P+ V FL K IACG+ F+++L G+V+A GEG GQLG G PLL L + VA GWAHALAL+ G+++AWG N GQLG+ DTK+R P
Sbjct: 91 LYAWGAGDSGQLGLGGAITSTKSPRKLRELPGLAFTSIACGGYHSAAVTSTGALYTWGRNLEGQLGHASSLFSTSDNETQ-NGVFFHPKHVDAFL-----KKRCKHIACGDKFSIILTDAGDVYACGEGQVGQLGQGTAASQFLPLLTLLG--DKADPFAQVACGWAHALALTASGRLFAWGFNQYGQLGLDDTKSRFFP 282
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A6G0WB17_9STRA (IPT/TIG domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB17_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.460e-38 Identity = 89/200 (44.50%), Postives = 118/200 (59.00%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
+ WG+G GQLG G + D P + SV+CG H+AA++ G++YTWGR FEGQLGH S Q + Q NGV P+ V+ FL K +ACG +FT VL + G+++AFGEG GQLG GR T+S P L + T V +A GWAHALA+S+ G+++AWG N GQLG+GDT +R P
Sbjct: 91 IFVWGDGEFGQLGMGATVSSSDRPLKLRQSNHLTFTSVACGGYHTAAISNGGDLYTWGRNFEGQLGHSSQAAQFGECEVQ-NGVFHHPKHVSAFLNTK-----CHQVACGEHFTAVLSRQGDIYAFGEGQSGQLGIGRCTKSFIPRKTLPSIDATD-PFVEIACGWAHALAVSKSGRLFAWGFNQYGQLGLGDTTSRFLP 283
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A6A4Z4J8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z4J8_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.700e-38 Identity = 92/203 (45.32%), Postives = 119/203 (58.62%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPAC---QANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
+ WG+ + GQLG G D P + L +SV+CG H+AA++ SG +YTWGR FEGQLGH S PAC + NGV P+ V FL K +ACG+ FT+VL GE+++FGEG GQLG+GR T+ +P L LA S V +A GWAH LA++ G++Y+WG N GQLGVGDTK R P
Sbjct: 95 LFVWGDAQYGQLGLGGTITTKDHPSRLSQLDHIVFSSVACGGYHTAALSNSGGLYTWGRNFEGQLGHSSVIA----PACVNEKLNGVFHRPKHVAAFLNEK-----CKQVACGDKFTVVLTVPGEIYSFGEGQSGQLGTGRCTKVFQPKLTLA-SDAPDDIFVEIACGWAHTLAITRAGRLYSWGFNQYGQLGVGDTKTRFLP 287
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A024TG72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG72_9STRA) HSP 1 Score: 151 bits (382), Expect = 6.820e-38 Identity = 95/223 (42.60%), Postives = 129/223 (57.85%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPAC----QANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAA-SPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALG 654
V WG+GR GQLG G + P I L S++CG H+AA++ SG++YTWGR FEGQLGH S+ +C + NGV P+ V L K +ACG+ FT+ L G+++AFGEG GQLG+GR T+ +P LAL + SP+ V +A GWAH LA+++ G++++WG N GQLG DTK R TP + V A VA + A G
Sbjct: 91 VFVWGDGRFGQLGLGGTIVAKEHPVKIGQLDHLTFKSIACGGFHTAALSESGDLYTWGRNFEGQLGHTSASA-----SCAVNEKLNGVFHRPKHVAPLLNKK-----CKQVACGDKFTVALTVHGDIYAFGEGQAGQLGTGRCTKVLQPTLALTSESPDD--PFVEIACGWAHTLAMTQTGRLFSWGFNQYGQLGASDTKTRFTPEQVV--ACVPVAHVFAGG 299
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A1V9Z9H8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9H8_9STRA) HSP 1 Score: 149 bits (376), Expect = 4.030e-37 Identity = 90/200 (45.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
+ WG G GQLG G A PR + L AS++CG HSAAVT +G +YTWGR EGQLGH S + + NGV P+ V FL K IACG+ F+++L G+V+A GEG GQLG GR T+ P++ L G V VA GWAHALAL+ G+++AWG N GQLG+ DTK+R P
Sbjct: 92 LYGWGSGEFGQLGLGGAILTAKAPRKLRELPCASFASIACGGYHSAAVTTTGALYTWGRNMEGQLGHASPLLSTAENEVK-NGVFHHPKHVDDFL-----KKRCKQIACGDKFSVMLTDSGDVYACGEGQTGQLGQGRCTKQFLPMVTLLGDKTDG--FVQVACGWAHALALTASGRLFAWGFNQYGQLGLDDTKSRFFP 283
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A1V9YP54_9STRA (IPT/TIG domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YP54_9STRA) HSP 1 Score: 149 bits (375), Expect = 5.880e-37 Identity = 90/200 (45.00%), Postives = 116/200 (58.00%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPACQANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAASPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTP 600
+ AWG+G+ GQLG G + P+ I + S++ G HSAA+T SG +Y WGR FEGQLGH ++ + GV P+ V FL K IACG+ F+++L + GEV+A GEG GQLG GR T+ P+L L A E V VA GWAHALAL+ G+++AWG NH GQLGV DTK R P
Sbjct: 86 LFAWGDGQYGQLGLGGNVNQAKNPQKIREIPQAHFTSIASGGYHSAAITDSGSLYMWGRNFEGQLGHAMHCMTREQNEAKY-GVVHHPKHVDDFL-----KKLCKQIACGDKFSIILTENGEVYACGEGQMGQLGQGRCTKLMHPMLTLLA--EKHDLFVQVACGWAHALALTGSGRLFAWGFNHYGQLGVDDTKTRFFP 277
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Match: A0A418B883_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B883_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.100e-36 Identity = 94/230 (40.87%), Postives = 130/230 (56.52%), Query Frame = 1
Query: 1 VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCSGEVYTWGRGFEGQLGHGSSKTQQDDPAC----QANGVQLTPRLVTHFLPAKKPKIAAAAIACGNNFTLVLGKGGEVWAFGEGGCGQLGSGRRTQSARPLLALAA-SPETGGAMVAVAAGWAHALALSERGQVYAWGLNHVGQLGVGDTKARHTPTRTVFSASAEVAEIHALGGRSCALT 675
V WG+GR GQLG G + P ++CG H+AA++ SG++YTWGR FEGQLGH S+ +C + NGV P+ V L K +ACG+ FT+ L G+++AFGEG GQLG+GR T+ +P LAL + SP+ V +A GWAH LA+++ G++++WG N GQLG DTK R TP + V A VA + A G S A++
Sbjct: 52 VFVWGDGRFGQLGLGGTIVAKEHP-------------IACGGFHTAALSESGDLYTWGRNFEGQLGHSSASA-----SCAVNEKLNGVFHRPKHVAPLLNKK-----CKQVACGDKFTVALIVHGDIYAFGEGQAGQLGTGRCTKVLQPTLALTSESPDD--PFVEIACGWAHTLAMTQTGRLFSWGFNQYGQLGASDTKTRFTPEQVV--ACVPVAHVFAGGNYSAAIS 254 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150878 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12583 ID=mRNA_12583|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_48:126503..127309- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCTGGCGTGGGGAGAGGGAAGAGAAGGGCAGCTGGGCAGTGGCAAGGCback to top protein sequence of jgi.p|Trimin1|150878 >Trimin1|150878|gw1.48.107.1 ID=Trimin1|150878|gw1.48.107.1|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp VLAWGEGREGQLGSGKAHARWDTPRVIPGLAGKQVASVSCGSAHSAAVTCback to top mRNA from alignment at Contig_48:126503..127309- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12583 ID=mRNA_12583|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_48:126503..127309- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_48:126503..127309- >mRNA_12583 ID=mRNA_12583|Name=jgi.p|Trimin1|150878|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_48:126503..127309- (Tribonema minus UTEX_B_3156 )back to top |