mRNA_12562 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|90877
Unique NamemRNA_12562
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A836C944_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C944_9STRA)

HSP 1 Score: 734 bits (1894), Expect = 1.630e-266
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 2 
Query:   11 MPSYIAVAATAGLALVGCGTDNAAAFNLMPAAARQPQPPRLRRLTSGCRRQWTTPTPRTEQISCFSRCTRLHARGKIFGEDDEAEEVVVPAEEFDDESLDVLTADMGGDEDDPFIASMRGGASDEDMLAGLTEEELEEQAVAVEVLQQYPDAPIVLVDDMGNVIGGVDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGEQWGN 1129
            MPSYIAVAATAGLALVGCGTDNAAAFNLMPAAARQPQPPRLRRLTSGCRRQWTTPTPRTEQISCFSRCTRLHARGKIFGEDDEAEEVVVPAEEFDDESLDVLTADMGGDEDDPFIASMRGGASDEDMLAGLTEEELEEQAVAVEVLQQYPDAPIVLVDDMGNVIGGVDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGEQWGN
Sbjct:    1 MPSYIAVAATAGLALVGCGTDNAAAFNLMPAAARQPQPPRLRRLTSGCRRQWTTPTPRTEQISCFSRCTRLHARGKIFGEDDEAEEVVVPAEEFDDESLDVLTADMGGDEDDPFIASMRGGASDEDMLAGLTEEELEEQAVAVEVLQQYPDAPIVLVDDMGNVIGGVDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGEQWGN 373
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: D7FLF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF3_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 7.110e-82
Identity = 137/245 (55.92%), Postives = 179/245 (73.06%), Query Frame = 2 
Query:  386 DMLAGLTEEELEEQAVAVEVLQQYPDAPIVLVDDMGNVIGGVDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGEQ 1120
            D    L   E +E+ +A E+ +++PD   V VD  GN++GGV+P+   +  LE  +P       ++PEVAG   GMDDP DAPWR EAE+I+R +V+  GL CYDI+W+FH+LEVTVTR +     EEA YVDSD LM+AI+ VN ALE  EE L+VLGRHEL++ATPGAKD+LTTD++FKA+KGF+V+V  G     +RE+ GKL ERTFDEL++M+ GRKVRIPLALVDEVRLP A +E G++
Sbjct:  117 DFSDDLAAREQDEKRLAEELARKFPDIGRVKVDKFGNIVGGVNPFEGTDVKLED-QPIPDDDEKDFPEVAGVIAGMDDPADAPWRLEAEKIVRDQVQACGLTCYDILWTFHRLEVTVTRAEGDGPIEEAAYVDSDKLMQAIKGVNAALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELKGKLLERTFDELMIMKAGRKVRIPLALVDEVRLPPALVEAGDE 360
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A4D9D4Q5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4Q5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.050e-35
Identity = 90/222 (40.54%), Postives = 124/222 (55.86%), Query Frame = 2 
Query:  509 VDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTR---GDLPEDSE---EAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLN---VQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPG------EQWGN 1129
            +D  A EE   +  EP+     D  PE  G+  GMDDP DAPWR +AEE+IR  V E G + YD+ W  H + V +TR   G++  + E   +AG + SD +++  RAV +AL   +  L VL R  L + TPGAKD+LTT+REF+AF+G++V V   + +N        +G+L ER     +L  KG+ V IP  +V EVRLP A  E        E W N
Sbjct:   97 IDVTASEEGAGQENEPDW----DNIPEYGGEFLGMDDPLDAPWRLQAEEVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDGGNVESEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRVLQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMDEGWAN 314
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: W7TJE5_9STRA (Ribosome maturation factor rimp n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJE5_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.620e-33
Identity = 88/222 (39.64%), Postives = 121/222 (54.50%), Query Frame = 2 
Query:  509 VDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLP------EDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLN---VQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPG------EQWGN 1129
            +D  A EE   +  EP+     D  PE  G+  GMDDP DAPWR  AE++IR  V E G + YD+ W  H + V +TR D+       E   +AG + SD +++  RAV +AL   +  L +L R  L + TPGAKD+LTT+REF+AF+G++V V   + +N        +G+L ER     +L  KG+ V IP  +V EVRLP A  E        E W N
Sbjct:  207 IDVTASEEGAGQENEPDW----DNIPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMEEGWAN 424
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A7S2SW06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW06_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.100e-30
Identity = 78/179 (43.58%), Postives = 109/179 (60.89%), Query Frame = 2 
Query:  590 VAGDTGGMDDPPDAPWRREAEEIIRREVEE-TGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVV--LTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGE 1117
            V G   G+DDP D  WR +AEE++R  V    G+  YD+ W+   L+V      L ++++E G VD   +  A RA+  ALE  +E L +L RHEL +++ GAK+IL ++REF+AFKGFDVVV  L    ++ +  + GKL  R   E  +  +GR VRIP  LV+EVRLP+A  EP E
Sbjct:  122 VYGIMNGLDDPRDVFWRLKAEELVRGAVRPLAGVRIYDVCWNIATLQVL-----LEQETDEGGAVDLKVVETAHRAILDALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEANEEPVE 295
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A7S2SV25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV25_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.750e-25
Identity = 67/159 (42.14%), Postives = 97/159 (61.01%), Query Frame = 2 
Query:  650 EEIIRREVEE-TGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVV--LTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGE 1117
            +E++R  V    G+  YD+ W+   L+V      L ++++E G VD   +  A RA+  ALE  +E L +L RHEL +++ GAK+IL ++REF+AFKGFDVVV  L    ++ +  + GKL  R   E  +  +GR VRIP  LV+EVRLP+A  EP E
Sbjct:   12 QELVRGAVRPLAGVRIYDVCWNIATLQVL-----LEQETDEGGAVDLKVVETAHRAILDALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEANEEPVE 165
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A7S1TZY1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.510e-25
Identity = 72/186 (38.71%), Postives = 107/186 (57.53%), Query Frame = 2 
Query:  608 GMDDPPDAPWRREAEEIIRREVEET--GLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAI-RAVNQALEQEEERL----WVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLT-------GSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGEQW 1123
            GMDDP DAPWR EA   I   V+E        D++W+F  +++TVT        E+A    S A+++ + RA++  L   E  L    W L  H L + TPGA +++TT  +F+A+KGF V V+T       G      + + G LH RT +E+ L QKGR V++P+A+V EVRLP+ ++E G++W
Sbjct:  100 GMDDPLDAPWRLEAAAEIEELVKEKYPDAQAVDVLWAFSNVQITVT------PKEDANVPLSSAVIEMLTRAISDDLFPAEPELAHDHW-LTMHALSVCTPGASNVITTQEQFEAYKGFQVDVVTLGMPKSDGFAGVPGKTLTGTLHGRTTEEVHLNQKGRIVKVPIAMVSEVRLPEPELENGDKW 278
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A7S2D135_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D135_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.680e-23
Identity = 67/184 (36.41%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:  575 DEW----PEVAGDTGGMDDPPDAPWRREAEEIIRREVEE-TGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQRE-VMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKME 1108
            D+W    P   GD  G+DDP D  WR   +++IR  +    G++ YDI W+   L V +       ++EE+G V  + ++   +A+   LE  ++ L +L RH L +++ G  D+LT +R+F  FKGF+V V T ST + +R  ++G+L  R   E  + QKGR V+IP   V+EVRL   K E
Sbjct:  103 DDWDGRGPIERGDMNGLDDPRDVEWRIRGQDLIREAIAPLNGISVYDITWNIGDLTVFI-------ENEESG-VSMEDIIDCTKAIQDTLEPFDDELEILSRHTLEVSSKGIDDVLTAERQFITFKGFEVAVSTISTFSDRRAPILGRLVGRDVHETTINQKGRMVKIPNFYVEEVRLVKKKKE 278
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A7S1DE94_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE94_CYCTE)

HSP 1 Score: 103 bits (257), Expect = 5.650e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 2 
Query:  761 SEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPG 1114
            S+ A  VD+  +    + + + L+ +E RL +L RHELI+ATPGA D L T R+F A++GFDV+V T    N  R + GKL ER   +L++ +KGR V IPL  V  VRLP AK E G
Sbjct:   12 SDGAMVVDTSKISVIAKYILKGLDSQEHRLRILDRHELILATPGAPDTLETQRQFDAYRGFDVIVETVDPFNSNRVLTGKLVERNSMDLIIRKKGRMVTIPLNFVSSVRLPPAKREKG 129
[Close]
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Match: A0A7S2PI76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PI76_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.160e-22
Identity = 72/182 (39.56%), Postives = 94/182 (51.65%), Query Frame = 2 
Query:  596 GDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVT-----RGDLPEDSEEA---------------GYVDSDAL-MKAIRAVN----QALEQEEER-LWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIP 1063
            GD  G DDP DAPWR E E+IIR   E  G    D+ W      VT++     + D  E  EE                  V  DA+ M  +  V     +AL++ E+R L VL RHE+I+ +PG  ++L T R+F AFKGFDV+V T   L   R + GKL ERT  +  + QKG+KV IP
Sbjct:   42 GDPDGCDDPMDAPWRIEGEQIIRDAAESVGAVVEDVTWGMAMCTVTISDTTGVKKDTSEYLEERKKRDDEYPWMREERDAVVTEDAVDMSGVGVVAGTIIEALQEAEDRDLDVLSRHEIIVTSPGVSNVLETQRQFDAFKGFDVIVQTIDPLGSNRRLEGKLLERTALDTFITQKGKKVTIP 223
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|90877 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C944_9STRA1.630e-266100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FLF3_ECTSI7.110e-8255.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D4Q5_9STRA5.050e-3540.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TJE5_9STRA1.620e-3339.64Ribosome maturation factor rimp n=1 Tax=Nannochlor... [more]
A0A7S2SW06_9STRA2.100e-3043.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SV25_9STRA1.750e-2542.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1TZY1_9STRA5.510e-2538.71Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2D135_9STRA3.680e-2336.41Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1DE94_CYCTE5.650e-2346.61Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2PI76_9STRA1.160e-2239.56Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:603253..609868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|90877|CE90876_163
Max annot lvl2759|Eukaryota
EggNOG OGs2E9GY@1|root,2SFUT@2759|Eukaryota
Evalue2.85e-83
Seed ortholog2880.D7FLF3
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRibosome maturation factor RimP, C-terminal
Ec32 orthologEc-12_007950.1
TranscriptId91199
TrackFilteredModels1
ProteinId90877
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|90877gene_12562Tribonema minus UTEX_B_3156 geneContig_78 603253..609868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|90877Trimin1|90877|CE90876_163Tribonema minus UTEX_B_3156 polypeptideContig_78 603263..609745 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12562_1exon_12562_1Tribonema minus UTEX_B_3156 exonContig_78 603253..603411 +
exon_12562_2exon_12562_2Tribonema minus UTEX_B_3156 exonContig_78 603640..603699 +
exon_12562_3exon_12562_3Tribonema minus UTEX_B_3156 exonContig_78 604528..604750 +
exon_12562_4exon_12562_4Tribonema minus UTEX_B_3156 exonContig_78 606115..606314 +
exon_12562_5exon_12562_5Tribonema minus UTEX_B_3156 exonContig_78 606860..606991 +
exon_12562_6exon_12562_6Tribonema minus UTEX_B_3156 exonContig_78 607668..607821 +
exon_12562_7exon_12562_7Tribonema minus UTEX_B_3156 exonContig_78 608709..608831 +
exon_12562_8exon_12562_8Tribonema minus UTEX_B_3156 exonContig_78 609665..609868 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12562UTR5_12562Tribonema minus UTEX_B_3156 five_prime_UTRContig_78 603253..603262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12562CDS_12562Tribonema minus UTEX_B_3156 CDSContig_78 603263..603411 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12562UTR3_12562Tribonema minus UTEX_B_3156 three_prime_UTRContig_78 609746..609868 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12562 ID=mRNA_12562|Name=jgi.p|Trimin1|90877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1255bp|location=Sequence derived from alignment at Contig_78:603253..609868+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAAGCGGGCATGCCGTCGTATATCGCTGTAGCTGCTACTGCGGGCTTAG
CGCTGGTGGGATGTGGCACCGATAACGCAGCGGCGTTCAACCTCATGCCA
GCAGCAGCACGCCAACCACAACCACCACGGTTACGCAGGTTGACATCTGG
CTGCCGCAGACAATGGACCACACCCACGCCACGGACAGAGCAAATTTCCT
GCTTCAGCCGATGCACAAGATTACACGCACGCGGCAAGATCTTTGGCGAA
GACGATGAGGCAGAGGAAGTGGTGGTGCCCGCAGAGGAGTTTGACGATGA
AAGCCTGGATGTGCTAACGGCTGACATGGGGGGGGATGAGGATGATCCAT
TCATAGCTAGCATGCGCGGCGGGGCTAGCGATGAGGACATGCTGGCTGGT
TTGACGGAGGAGGAGCTGGAAGAACAAGCCGTGGCTGTAGAGGTTCTGCA
GCAGTACCCAGACGCACCAATAGTGCTGGTAGACGACATGGGCAACGTTA
TTGGGGGGGTGGACCCATACGCGGATGAGGAGAATGGCCTTGAAAGAGGG
GAACCCAATGTTGTTGGGCAGAATGATGAGTGGCCGGAGGTTGCTGGTGA
CACGGGGGGTATGGATGACCCCCCCGATGCCCCCTGGAGGAGGGAAGCTG
AGGAGATCATCCGGCGGGAGGTAGAGGAAACGGGTCTCAACTGCTATGAC
ATCATGTGGTCATTCCACAAGCTGGAGGTGACTGTGACTAGGGGGGACTT
GCCTGAGGACAGCGAAGAGGCAGGGTATGTAGACAGCGATGCGCTGATGA
AGGCCATCAGGGCCGTCAACCAAGCCCTGGAACAGGAGGAGGAGCGGTTG
TGGGTCTTGGGTAGGCATGAGCTCATCATTGCCACACCAGGAGCCAAGGA
CATTCTCACCACAGACAGAGAGTTCAAGGCTTTCAAGGGGTTTGACGTGG
TAGTGCTGACGGGCAGCACGCTCAACGTACAGAGGGAGGTCATGGGCAAG
CTGCACGAGCGGACATTTGATGAGCTCGTACTCATGCAGAAGGGACGCAA
GGTGCGAATCCCCCTGGCATTGGTAGATGAAGTACGACTTCCCGACGCTA
AGATGGAGCCAGGGGAGCAATGGGGAAACTAAGCAGAGGCTCGTTTACAC
ATCACATTGCATGAACCCTACCATGGGGGCATGAGCATGCGCCGTGTTTA
GTGTACGGTCTCTGTTGATCAATGGAACACACAACAATCACATTTTACAC
CAGCA
back to top

protein sequence of jgi.p|Trimin1|90877

>Trimin1|90877|CE90876_163 ID=Trimin1|90877|CE90876_163|Name=jgi.p|Trimin1|90877|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=374bp
MPSYIAVAATAGLALVGCGTDNAAAFNLMPAAARQPQPPRLRRLTSGCRR
QWTTPTPRTEQISCFSRCTRLHARGKIFGEDDEAEEVVVPAEEFDDESLD
VLTADMGGDEDDPFIASMRGGASDEDMLAGLTEEELEEQAVAVEVLQQYP
DAPIVLVDDMGNVIGGVDPYADEENGLERGEPNVVGQNDEWPEVAGDTGG
MDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPED
SEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILT
TDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRI
PLALVDEVRLPDAKMEPGEQWGN*
back to top

mRNA from alignment at Contig_78:603253..609868+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12562 ID=mRNA_12562|Name=jgi.p|Trimin1|90877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6616bp|location=Sequence derived from alignment at Contig_78:603253..609868+ (Tribonema minus UTEX_B_3156 )
CAAAGCGGGCATGCCGTCGTATATCGCTGTAGCTGCTACTGCGGGCTTAG
CGCTGGTGGGATGTGGCACCGATAACGCAGCGGCGTTCAACCTCATGCCA
GCAGCAGCACGCCAACCACAACCACCACGGTTACGCAGGTTGACATCTGG
CTGCCGCAGGTGCGTGCTGTTGCTTGAGAAGCTGCATGGAGGTGTTTCAA
GGCGCTTGCTGTGCTGCAATCCTTGCGCTGCGGGGCACAGCGCTTGGTCG
CGCTACAATCGTGAGATTCGTGCTTGCGTCTGTCTGTGGTCATGATATCA
GTGGAGCGGCGCCTGCATGGTACACATAGTGCTGTGAACGAATGACAAAT
CAAACATCTTCCTGGCACACTGTTCCTGTGCGCACAGACAATGGACCACA
CCCACGCCACGGACAGAGCAAATTTCCTGCTTCAGCCGATGCACAAGGTA
ACTTCAAGTACATGCTTAGTCGCTCATGGTCATGTTCAGCCACTGCAGTG
CCTGGTCTTGCATTAACGTGACTGTGGTGTCAAGGCAGTTGCTGATGAAT
GCCAGGCAGTTGGAAGCTGGTCGCTCACGGCATGCAGCAGCTCATGGTTG
CTCGCGTACATTTGAGATGTATCGAAGTTGAAGTACAAGAAGCAAGAAAA
AAGTGTGGCATGAGTGGCATTGCTGGATCCTTTCAACCAGGGGTATTGAT
TACATTGCGATCGCCTCACTATGGCCATGTAAATGGTTTTGCAGTACCAA
ATAACACAGGCGCCAGCTGGGTGAACTCCATTGGCGCAGAATTGAAGCAT
CTTGCCACTTCTAGTGCTCAATGAACACCTGGTGTGTTTGAACTGCTTTT
TGATGCAGTAACCAAGAGTCTATCAGCCCACCAAAAGAAAGCCATGCTTG
CAAGTCAGGCGCTGGTCAGCATGACTTCATACCTGCAGAGTGAACGTGAC
CAAGGCGTGGCATTGCATGGCATCAGCAGAGCGTGTTGGTTATCCTTATT
CATACCGATGCCTCTTGCAGCAGACAGCGGGGGGGGGGGGGGGGGGGGGT
GTAGTTTATGATAGTTTAACAGTGAGGCTACCCGTCAGATATCAATGCAA
GTAAGGGCTCTCGCTGGTCCACGGTTGGCATTCACTGCTGTTCACACTGC
TGTTCACAGTGCTTCACCCCCTGGTGTGCTCTGCGTGGCCGTGTCGCTAC
GCAGACCAACTCGAACACTACACCTAACCCTGACCTGTGCAATCCACTCA
ACCTCAAATCCTAACTCCTCCTCAGATTACACGCACGCGGCAAGATCTTT
GGCGAAGACGATGAGGCAGAGGAAGTGGTGGTGCCCGCAGAGGAGTTTGA
CGATGAAAGCCTGGATGTGCTAACGGCTGACATGGGGGGGGATGAGGATG
ATCCATTCATAGCTAGCATGCGCGGCGGGGCTAGCGATGAGGACATGCTG
GCTGGTTTGACGGAGGAGGAGCTGGAAGAACAAGCCGTGGCTGTAGAGGT
AAGGCACTATATGCAGGCATGTACTTCAAGTACGTAGGTATCATGAACTA
AAACTTTGACGGAGGAAGAGCTGTAAGAACAGGCCGTGGCGACAGAGGTA
CCTAAGGCCCGTATGGAGGCATGTGATTCAAGTGTGTAGGTATCATGAAG
TAAGCGTTTGGCGGAGGAGGAGCTGGAAGAACAAGCCGTGGCTACAGAGG
TAAGGCCTCGTACGTACGCAGGCGTGTACTTCAAGTGTGTAGGTATCATG
AACTAAAACATGTGTAAGGTACAAATAATGTGCATGTCACTGAGCATACT
GCACAGAGGAGTGCATACATGGGCAGAATGGCATGGTGATCCTTGAAAGG
ACAGATATACAGCTTGGCTGTCTCGATGTTGATGAGAGTAGTTCTACTAG
CACTGGAGCGCATCGAGGTTTGCGGAGGTTTCATTGTGCTTTGCAAAACG
CTGATTATCGATTGCTTAAAGCACGCATACTCAATGAACGACAGCAGCAA
CAGCAGGAGTCTGTTGAAAAGGGACTGTCATTTCTCCATTGGCATTGCAA
GTGAGCAAGGACGGTGTTGGCGGCGGCTGATGCATTGCACGCACAATATA
CTTCAAGAGGACCTGGTGCTTGCTGCATGATAAGCATGTCACCTATTGGC
TTTGGATCAAGATCTCTGCTGCTGAAGTTCAGCCAGATCAATATGGCGAC
TCAATGTGAGGAGTTAGCAGGTACTTTGCCATATGTTGATGCAGGTGTAT
GCAAGGCCTCACGCTGAGCTTGTCAAACTGGCGAAAGTAACACTTGGTGC
GTTGGTCTAATGTGGTGATGTTCAACCGCATCAAGCATGATATTGAGTGT
TGTTTGATAGTATTTGACAAGAGATAGCTATGCGTCTGACACATGGCGGT
GAAACCACCTGTGGCGTTGATCTGGTCAGGGACGACGGCGATCAGTGTTA
GGGTTGGAGACAACAATGGTCAGGGCTAGGGTTAGGGTTAGGGTTAGGGT
TGAGCTAGCAATGAGGCACTACATACACGTGGCGCTGGTGAGGCAGGCAT
GTTTGCATGATATGTGTGCATGGGATTCTGCTAGTCAAATGGTCTGCACA
TCACCACTATGGCAGCTGCATCAATGCCATTGGCAGGCATACATACCCAT
CATAACACAGTACATGCATCGTGACACACGCTTGCCAAGGCAATGACCTG
GTGACACTATTCATCCATTCACCGCCAGTTCGTTAAATCAAACCTTAGCC
CTGAGACACTGGAAGACACATGACTAGCCCTGCCATCCATATTCCTCAGT
GCATTCCTGGTATCTCACTCTCGTGGCCAATGTGTGCATCTCCCTGTCTC
TCACCGCAACAGGTTCTGCAGCAGTACCCAGACGCACCAATAGTGCTGGT
AGACGACATGGGCAACGTTATTGGGGGGGTGGACCCATACGCGGATGAGG
AGAATGGCCTTGAAAGAGGGGAACCCAATGTTGTTGGGCAGAATGATGAG
TGGCCGGAGGTTGCTGGTGACACGGGGGGTATGGATGACCCCCCCGATGC
CCCCTGGAGGAGGTACGTACATGTGTATGCACATATGTCGCTGCTAGTAG
TTCACTTGTCACTTGAAGTTCGCTCGCTCTTTCTCAATGCCTCAACTCAA
ACACAATGTTTGAGGCTGGCTTGCATAACTGATTGGCACCACATGGCGCT
GTGCGGAGGTCAGTCAGCAGCCTATCAAACAAGCTCTTCTTTGAGCTCTG
TCACATAAGACAAACAATGGAAACAAAAACCCAAGTCGCCTTGTGCAGGT
CACAGAGTCGTAGACCAATGCTTTGATAATGCGCGCACTGTGACTCTCTG
CAACTTAACTTCTTGAAGTAGTCATTTGCTGCCTGCCAGATGGCAGCATG
AGTAATAAAAAAAATGCAGCCACTGACAGCCACGTCCAGTGCTGCTCTTT
TGATACTTGTGTACGAAATGCAAGGGTTAGGGTTAGGGTTATATACAAGG
AAGCTGTACACATTTTTGCCAGATGGCAGCCACGAGTACGTGAATGACCT
GTAGTTGCTGACAGCCGCTTACAATACTGCTATTGCTAATGTGCGACATG
TGTGTAGGGAAGCTGAGGAGATCATCCGGCGGGAGGTAGAGGAAACGGGT
CTCAACTGCTATGACATCATGTGGTCATTCCACAAGCTGGAGGTGACTGT
GACTAGGGGGGACTTGCCTGAGGACAGCGAAGAGGCAGGGTGAGTGCCTT
GTTGACCTAGGGTTAGGTAGGCTAGATTAGACCAAGTCATTTGCGCACGC
CACGTTTGTTGCGGATTGGTGTCTGTTTGACGTACAGAAGTATATAGGTA
ATGGTTGGTACCTGTTTGGCACATATGTAGGTAATGATTGCATAGCAAGC
GGCTTCCACACCCAGGTACTGATGCATTCCTGGTGTATTGGAGCCTTGCG
TTTGGGCAGACGGTGTACTGTACCTTCTGCAGAGTTAATGGTTGAAGTTA
GAATTTGCCGTTGTATCTGGAAGACTGTGCCTGTTTCAAAATGTGGGACA
AAAGTAGCTGACAGTGTGGGTCATGGTGCAGTGTACTTGCAATGGTGTTG
AGCTGAACCCCATCTCAAGAGGTGTTCTGCATGGCACCAACTTATATGCA
AGCATATGCATTATGAAGCAGCACAAAACACACCGAATGCGACCAGCAGC
GCATTGGCAGCGAGCACTTGGCGTCATTGCATGCGCTGCTGCTACAAGAT
GTTGCCTGCTGTGTTGCAGTCAGTATGTGCTATGAGATAGGCATTCTTCA
ATGAGATGTTTTGAGATGTGCCCGTAGCATTTGCATTAGCCATGTGTGAG
GTATCCGCGGCGTCACAACAACCTACATATAGCTCACAGGCACCATGTAC
TTGCCACTCGGACAGGTATGTAGACAGCGATGCGCTGATGAAGGCCATCA
GGGCCGTCAACCAAGCCCTGGAACAGGAGGAGGAGCGGTTGTGGGTCTTG
GGTAGGCATGAGCTCATCATTGCCACACCAGGAGCCAAGGACATTCTCAC
CACAGACAGAGAGTTCAAGGTGCGTGTGGCAACTTAACCCTAACCCTAAC
CCTAACTGATGTAGACTTCAAGTACCAACATACTTATATTCCGCTGCTCT
ACGTGCAAGCATGTACGTTTATCTGCACGAGTTTACGGCAACGTGTGATG
GCAAACCCTATGGGGCGTGAAGTGGCAGCCAAACCCTAAGCTGCTGCAGG
CTGTGTTGCAGTGCCAGTAACAACCCTGTATGTAGCCATGGGTGACTTGC
GCGGGCCTATATAGGAGCAGCCAATGAGCTAAGCTACTCCTGACATCAGC
GCAACCTTGTTTTCCGTCCTGACGCCATGCTGCAACTGGCACGCAGACAG
GATGGGTTAAGGTTAGGGTTAGGAACCTACCCTAACCCCAAGGAACCTAA
CCCTTACCCCAATCCTGGCTGTTACCGATGGCTGACTGTACTTGGTTGCA
CGCAGGCAGTGCAGGCGCATCTTTTATCAGTCTTAGTTTTGATCTTCCCC
TTCATATCACAAACGATAAGGATTGCCGTCAGTGATGCTGTAGCTATAAA
GATGCTATGGATGCTGCCCTCTTCCTGCTTACACTGCAGTATGAGTGCAC
TGACCAGCTGAGGTATCGCTGTTGACGCTCAGCACTTCACGTCACATGTG
CATTACACCATGCCGAATGCAGGCGCATGTTGTCTGGAAACGTGATTGTG
CATTAACGCACCACATCCAGGATAGATTGACTGCTGATCAACAACACGGT
GCTTACATCGGGCAGTCTCATTTACGAGCATTTACATTGATCAATTGTCA
GTGCGCAGCAGACAGCTACTTGACGGTGCAAGTGGCAGCTTAGCACCTAT
ATATCACCACACACTTGTTAACTCTTGTGTGTTGTTTGCACACCTGCTGC
TTGCAGGCTTTCAAGGGGTTTGACGTGGTAGTGCTGACGGGCAGCACGCT
CAACGTACAGAGGGAGGTCATGGGCAAGCTGCACGAGCGGACATTTGATG
AGCTCGTACTCATGCAGAAGGGACGCAAGGCAAGTACTGTGAAGTGACTT
AAGTGCAGGTTCACGTCTCATGCTCATGCAGTACGTAGGACATGACAAGC
AAGCAGTTTCACTGCTGGCAACATCTGCTTGTCCTCAGTCTCATTTGGTG
ACCTCCCTGGTGTGCACAAGGAAAGATGAAGGCTCAGCGGTCTTTCTGCC
TGCCAGTGAGCATTCGTCAGAGCAGTCAGTCATATGACAGAGGACATGGG
CAGTGATGCAAGACAAGGGGCCAGTTAACCCTGGAAGTAGTTGCCGTGAG
TGCTCAAGGCCTAAGGTCACTGCGCCTGACATCCAGCAACACTTTGTCCA
ATTATTGGACAGTGTTGTGCTTATCACCTGACATCTTCTCACAACACAGT
GTACGCAGATGAAGCAGCGCTCATTCCTTCTGGTACTCCAACTTCACCTC
GAACCGCAGTGTGTGTGACAGCGATGCAATCAGAGCTCATGAGCTCATTC
TAGGCAATGTACGCAAGGCACCCGCGTAACAAGTACGGTGGGGGGGGGGC
ACATGGAGGAGGACGTAGGGGAGGACCCCGAGATGCCATTTGGCGGCGGC
GGCGTTTGAGTGGTTGTCGTTGCGACACTTTCAGACTGTCATACGACATG
TAGATTCCTTACAGCTAGATGCCAATCATCTGGGCTTTTTCGCGCCCTGA
GCAAGAATTAATAAAAAGTACGGCTGGATCACGCTGCCACTGCTTACTGT
TTCTCATCACGATGCCTGCCACAATCTGCGTCAAAAGGAATGTCTCTCAA
AGTCTTTGCATGCGCCTGGCTTAACTTGGTTCTTGGTATTTCTGCCTTGT
GTGGACATGCAGGTGCGAATCCCCCTGGCATTGGTAGATGAAGTACGACT
TCCCGACGCTAAGATGGAGCCAGGGGAGCAATGGGGAAACTAAGCAGAGG
CTCGTTTACACATCACATTGCATGAACCCTACCATGGGGGCATGAGCATG
CGCCGTGTTTAGTGTACGGTCTCTGTTGATCAATGGAACACACAACAATC
ACATTTTACACCAGCA
back to top

Coding sequence (CDS) from alignment at Contig_78:603253..609868+

>mRNA_12562 ID=mRNA_12562|Name=jgi.p|Trimin1|90877|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1122bp|location=Sequence derived from alignment at Contig_78:603253..609868+ (Tribonema minus UTEX_B_3156 )
ATGCCGTCGTATATCGCTGTAGCTGCTACTGCGGGCTTAGCGCTGGTGGG
ATGTGGCACCGATAACGCAGCGGCGTTCAACCTCATGCCAGCAGCAGCAC
GCCAACCACAACCACCACGGTTACGCAGGTTGACATCTGGCTGCCGCAGA
CAATGGACCACACCCACGCCACGGACAGAGCAAATTTCCTGCTTCAGCCG
ATGCACAAGATTACACGCACGCGGCAAGATCTTTGGCGAAGACGATGAGG
CAGAGGAAGTGGTGGTGCCCGCAGAGGAGTTTGACGATGAAAGCCTGGAT
GTGCTAACGGCTGACATGGGGGGGGATGAGGATGATCCATTCATAGCTAG
CATGCGCGGCGGGGCTAGCGATGAGGACATGCTGGCTGGTTTGACGGAGG
AGGAGCTGGAAGAACAAGCCGTGGCTGTAGAGGTTCTGCAGCAGTACCCA
GACGCACCAATAGTGCTGGTAGACGACATGGGCAACGTTATTGGGGGGGT
GGACCCATACGCGGATGAGGAGAATGGCCTTGAAAGAGGGGAACCCAATG
TTGTTGGGCAGAATGATGAGTGGCCGGAGGTTGCTGGTGACACGGGGGGT
ATGGATGACCCCCCCGATGCCCCCTGGAGGAGGGAAGCTGAGGAGATCAT
CCGGCGGGAGGTAGAGGAAACGGGTCTCAACTGCTATGACATCATGTGGT
CATTCCACAAGCTGGAGGTGACTGTGACTAGGGGGGACTTGCCTGAGGAC
AGCGAAGAGGCAGGGTATGTAGACAGCGATGCGCTGATGAAGGCCATCAG
GGCCGTCAACCAAGCCCTGGAACAGGAGGAGGAGCGGTTGTGGGTCTTGG
GTAGGCATGAGCTCATCATTGCCACACCAGGAGCCAAGGACATTCTCACC
ACAGACAGAGAGTTCAAGGCTTTCAAGGGGTTTGACGTGGTAGTGCTGAC
GGGCAGCACGCTCAACGTACAGAGGGAGGTCATGGGCAAGCTGCACGAGC
GGACATTTGATGAGCTCGTACTCATGCAGAAGGGACGCAAGGTGCGAATC
CCCCTGGCATTGGTAGATGAAGTACGACTTCCCGACGCTAAGATGGAGCC
AGGGGAGCAATGGGGAAACTAA
back to top