mRNA_1252 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A836CIZ6_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ6_9STRA) HSP 1 Score: 307 bits (787), Expect = 7.340e-105 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query: 1 MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI 450
MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI
Sbjct: 1 MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI 150
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: D7G7H1_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H1_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.620e-18 Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 79 ISEGGEA---APQKKEEILRMVTFLFQST--QADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKK-ATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
I+ G +A A + EIL+++ FLF S ++ VLD SR+V+ V R + R +WLVQ S +PY+CL YCSCR+FQE+ ++ A VLCKHLLA+RLA A G EVDD +L
Sbjct: 128 IARGRDATAVAAAAQAEILKVLDFLFCSDCPLVESTIQVLDKSRVVKVVARNTGRSVWLVQGSR----GAPYLCLR-EYCSCRSFQELVRRGAPHPVLCKHLLAVRLAPALGLSMSEEVDDDKL 246
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: C1EB55_MICCC (SWIM-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EB55_MICCC) HSP 1 Score: 68.2 bits (165), Expect = 2.670e-10 Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 43 VTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQ-EVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
+ + D E+ S P+ + L ++ F+F + +N + + + V +S R W V+ S G Y+ HYCSCR FQ +V K L+ CKH+LA+R+A+A V E+DD L
Sbjct: 78 MAIADAIFDEIRNSGTDVKKPEITDRQLELLAFVFDAKHLENSLVMYQKRAVKKLVAVKSGRSCWQVRGKS--GAKEEYLVFPTHYCSCRAFQWDVLSKGEQLI-CKHMLAVRIAEALDDYNVTEIDDALL 205
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A7S0KE63_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KE63_MICPS) HSP 1 Score: 67.0 bits (162), Expect = 3.090e-10 Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 43 VTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQ-EVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
+ + D E+ S P+ + L ++ F+F + +N + + + V +S R W V+ S G Y+ HYCSCR FQ +V K L+ CKH+LA+R+A+A V E+DD L
Sbjct: 40 MAIADAIFDEIRNSGTDVKKPEITDRQLELLAFVFDAKHLENSLVMYQKRAVKKLVAVKSGRACWQVRGKS--GAKEEYLVFPTHYCSCRAFQWDVLSKGEQLI-CKHMLAVRVAEALDDYNVAEIDDALL 167
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A7S3AY48_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AY48_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 4.360e-10 Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 127 RMVTFLFQSTQADN-CADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDD 423
R+V F A N A++LDH I+ C+ R+SRR + + + + + C+ +C+C +F ++LCKH LA+R+A A G L + EVDD
Sbjct: 23 RVVELQFLCPDAFNGAAEILDHRPIMRCIARESRREFYTIDAKAKRSN-----CMVPGFCTCGSFCFHVAAKPEMLLCKHELAVRIADAVGLLQITEVDD 117
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A7S4FBB0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBB0_CHRCT) HSP 1 Score: 58.5 bits (140), Expect = 2.220e-7 Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 127 RMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI*GAQGFAASW 480
R++ FL Q +++LD+ ++ S R +LV SSS K P++ + G +CSC F+ L++CKH LA+ LA+A G ++DD Q AQ F+ +W
Sbjct: 37 RLLYFLAQEALI-GASEILDNKQVKRIEATSSGRSFFLVASSSRK----PHLSIPG-FCSCAAFRHKVASRAELLVCKHELAVMLAEALGMSVKEQIDDEQW--------AQRFSLAW 140
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A8J2SKC3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKC3_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.240e-6 Identity = 40/144 (27.78%), Postives = 65/144 (45.14%), Query Frame = 1
Query: 37 DNVTLLDDYLAEV--AISEGGEAAPQK-KEEILRMVTFLFQSTQA-----DNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYM 444
D + LDD LA + + + EA + ++ LR+ L A D+ DVL + R S R V ++ Y C +C+C F E + + ++ VLCKH+LA RLA K+ ++ D Q ++Y+
Sbjct: 28 DLLATLDDALAYIHQSFPQDDEAGKVRARDAALRVADDLLGGDPAGRDLMDDAIDVLQTRTLKRVTARPSGRSFVAVDAAFGGTNGGRYACWTD-FCTCEKFGEAAARVSTKVLCKHMLAARLAPLCSKMEAQDISDDQYHSYI 170
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A3S0ZV08_ELYCH (SWIM-type domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZV08_ELYCH) HSP 1 Score: 55.5 bits (132), Expect = 2.440e-6 Identity = 32/110 (29.09%), Postives = 58/110 (52.73%), Query Frame = 1
Query: 106 QKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGG-HYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
Q +++L ++F FQS+ ++++ S + SR ++ +S +PY C G YCSC +Q + + ++CKH+LA+RLA+A KL +V D ++
Sbjct: 30 QLSDDLLSTLSFFFQSSLLP-ALELVEKSSVCHVTSPSSRSLYQVIGASG-----TPYTCFPGLKYCSCPAYQFSVLRKDTHMMCKHVLALRLAEAMDKLKPLQVSDSEI 133
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A8J6CDQ7_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDQ7_DIALT) HSP 1 Score: 54.7 bits (130), Expect = 5.120e-6 Identity = 43/134 (32.09%), Postives = 61/134 (45.52%), Query Frame = 1
Query: 22 RQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSR-RRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVD 420
R+ + T + D + +V + + LR + LF T + D+LD + I R + R W VQS+S S Y C G YCSC+ F + TS LCKH LA+RLA G+ E+D
Sbjct: 4 REASAERATAIGDGVLDVLCARARREGTLS-DATLRDLHVLFDKT-LQSAVDLLDFATITRLSPRGAEGRAFWKVQSTS----GSVYHCFSG-YCSCQAFAFLVAH-TSQSLCKHQLAVRLADTTGRFARQELD 129
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: UPI000A2A7909 (zinc finger SWIM domain-containing protein 7 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7909) HSP 1 Score: 52.4 bits (124), Expect = 2.960e-5 Identity = 32/111 (28.83%), Postives = 54/111 (48.65%), Query Frame = 1
Query: 115 EEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCL-GGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYM 444
+E+L + F+F + + D+ D I + V SR +V SS Y CL G +C+C ++ V+CKHLLA+ +A+A G + +V + + AY+
Sbjct: 28 DELLSALHFIFGQSLLHSL-DLXDKHNITKLVSPSSRAIYQVVGSSGQT-----YTCLLNGSFCTCPSYTYTVLVKMDSVMCKHLLAVNMAEALGNVKERQVSNESIVAYL 132 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1252 ID=mRNA_1252|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=645bp|location=Sequence derived from alignment at Contig_18:136849..138335+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGGTGCCCTTGCTGTGCAGGCAGGGTGTCACAGACAACGTGACACTback to top protein sequence of jgi.p|Trimin1|347994 >Trimin1|347994|estExt_Genemark1.C_Ctg_180015 ID=Trimin1|347994|estExt_Genemark1.C_Ctg_180015|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQback to top mRNA from alignment at Contig_18:136849..138335+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1252 ID=mRNA_1252|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1487bp|location=Sequence derived from alignment at Contig_18:136849..138335+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:136849..138335+ >mRNA_1252 ID=mRNA_1252|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_18:136849..138335+ (Tribonema minus UTEX_B_3156 )back to top |