mRNA_1252 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347994
Unique NamemRNA_1252
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A836CIZ6_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ6_9STRA)

HSP 1 Score: 307 bits (787), Expect = 7.340e-105
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query:    1 MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI 450
            MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI
Sbjct:    1 MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI 150          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: D7G7H1_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.620e-18
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   79 ISEGGEA---APQKKEEILRMVTFLFQST--QADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKK-ATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
            I+ G +A   A   + EIL+++ FLF S     ++   VLD SR+V+ V R + R +WLVQ S      +PY+CL   YCSCR+FQE+ ++ A   VLCKHLLA+RLA A G     EVDD +L
Sbjct:  128 IARGRDATAVAAAAQAEILKVLDFLFCSDCPLVESTIQVLDKSRVVKVVARNTGRSVWLVQGSR----GAPYLCLR-EYCSCRSFQELVRRGAPHPVLCKHLLAVRLAPALGLSMSEEVDDDKL 246          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: C1EB55_MICCC (SWIM-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EB55_MICCC)

HSP 1 Score: 68.2 bits (165), Expect = 2.670e-10
Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 1
Query:   43 VTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQ-EVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
            + + D    E+  S      P+  +  L ++ F+F +   +N   +     + + V  +S R  W V+  S  G    Y+    HYCSCR FQ +V  K   L+ CKH+LA+R+A+A     V E+DD  L
Sbjct:   78 MAIADAIFDEIRNSGTDVKKPEITDRQLELLAFVFDAKHLENSLVMYQKRAVKKLVAVKSGRSCWQVRGKS--GAKEEYLVFPTHYCSCRAFQWDVLSKGEQLI-CKHMLAVRIAEALDDYNVTEIDDALL 205          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A7S0KE63_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KE63_MICPS)

HSP 1 Score: 67.0 bits (162), Expect = 3.090e-10
Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 1
Query:   43 VTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQ-EVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
            + + D    E+  S      P+  +  L ++ F+F +   +N   +     + + V  +S R  W V+  S  G    Y+    HYCSCR FQ +V  K   L+ CKH+LA+R+A+A     V E+DD  L
Sbjct:   40 MAIADAIFDEIRNSGTDVKKPEITDRQLELLAFVFDAKHLENSLVMYQKRAVKKLVAVKSGRACWQVRGKS--GAKEEYLVFPTHYCSCRAFQWDVLSKGEQLI-CKHMLAVRVAEALDDYNVAEIDDALL 167          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A7S3AY48_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AY48_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 4.360e-10
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:  127 RMVTFLFQSTQADN-CADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDD 423
            R+V   F    A N  A++LDH  I+ C+ R+SRR  + + + + +       C+   +C+C +F         ++LCKH LA+R+A A G L + EVDD
Sbjct:   23 RVVELQFLCPDAFNGAAEILDHRPIMRCIARESRREFYTIDAKAKRSN-----CMVPGFCTCGSFCFHVAAKPEMLLCKHELAVRIADAVGLLQITEVDD 117          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A7S4FBB0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBB0_CHRCT)

HSP 1 Score: 58.5 bits (140), Expect = 2.220e-7
Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  127 RMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI*GAQGFAASW 480
            R++ FL Q       +++LD+ ++       S R  +LV SSS K    P++ + G +CSC  F+        L++CKH LA+ LA+A G     ++DD Q         AQ F+ +W
Sbjct:   37 RLLYFLAQEALI-GASEILDNKQVKRIEATSSGRSFFLVASSSRK----PHLSIPG-FCSCAAFRHKVASRAELLVCKHELAVMLAEALGMSVKEQIDDEQW--------AQRFSLAW 140          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A8J2SKC3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKC3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.240e-6
Identity = 40/144 (27.78%), Postives = 65/144 (45.14%), Query Frame = 1
Query:   37 DNVTLLDDYLAEV--AISEGGEAAPQK-KEEILRMVTFLFQSTQA-----DNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYM 444
            D +  LDD LA +  +  +  EA   + ++  LR+   L     A     D+  DVL    +     R S R    V ++        Y C    +C+C  F E + + ++ VLCKH+LA RLA    K+   ++ D Q ++Y+
Sbjct:   28 DLLATLDDALAYIHQSFPQDDEAGKVRARDAALRVADDLLGGDPAGRDLMDDAIDVLQTRTLKRVTARPSGRSFVAVDAAFGGTNGGRYACWTD-FCTCEKFGEAAARVSTKVLCKHMLAARLAPLCSKMEAQDISDDQYHSYI 170          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A3S0ZV08_ELYCH (SWIM-type domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZV08_ELYCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.440e-6
Identity = 32/110 (29.09%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  106 QKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGG-HYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQL 432
            Q  +++L  ++F FQS+      ++++ S +       SR    ++ +S      +PY C  G  YCSC  +Q    +  + ++CKH+LA+RLA+A  KL   +V D ++
Sbjct:   30 QLSDDLLSTLSFFFQSSLLP-ALELVEKSSVCHVTSPSSRSLYQVIGASG-----TPYTCFPGLKYCSCPAYQFSVLRKDTHMMCKHVLALRLAEAMDKLKPLQVSDSEI 133          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: A0A8J6CDQ7_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDQ7_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 5.120e-6
Identity = 43/134 (32.09%), Postives = 61/134 (45.52%), Query Frame = 1
Query:   22 RQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSR-RRIWLVQSSSHKGGASPYVCLGGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVD 420
            R+   +  T + D + +V  +          +  LR +  LF  T   +  D+LD + I     R +  R  W VQS+S     S Y C  G YCSC+ F  +    TS  LCKH LA+RLA   G+    E+D
Sbjct:    4 REASAERATAIGDGVLDVLCARARREGTLS-DATLRDLHVLFDKT-LQSAVDLLDFATITRLSPRGAEGRAFWKVQSTS----GSVYHCFSG-YCSCQAFAFLVAH-TSQSLCKHQLAVRLADTTGRFARQELD 129          
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Match: UPI000A2A7909 (zinc finger SWIM domain-containing protein 7 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7909)

HSP 1 Score: 52.4 bits (124), Expect = 2.960e-5
Identity = 32/111 (28.83%), Postives = 54/111 (48.65%), Query Frame = 1
Query:  115 EEILRMVTFLFQSTQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCL-GGHYCSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYM 444
            +E+L  + F+F  +   +  D+ D   I + V   SR    +V SS        Y CL  G +C+C ++          V+CKHLLA+ +A+A G +   +V +  + AY+
Sbjct:   28 DELLSALHFIFGQSLLHSL-DLXDKHNITKLVSPSSRAIYQVVGSSGQT-----YTCLLNGSFCTCPSYTYTVLVKMDSVMCKHLLAVNMAEALGNVKERQVSNESIVAYL 132          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347994 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CIZ6_9STRA7.340e-105100.00SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
D7G7H1_ECTSI2.620e-1845.16SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
C1EB55_MICCC2.670e-1030.53SWIM-type domain-containing protein n=1 Tax=Microm... [more]
A0A7S0KE63_MICPS3.090e-1030.53Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
A0A7S3AY48_9EUKA4.360e-1034.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4FBB0_CHRCT2.220e-731.36Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A8J2SKC3_9STRA1.240e-627.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3S0ZV08_ELYCH2.440e-629.09SWIM-type domain-containing protein n=1 Tax=Elysia... [more]
A0A8J6CDQ7_DIALT5.120e-632.09SWIM-type domain-containing protein n=1 Tax=Diacro... [more]
UPI000A2A79092.960e-528.83zinc finger SWIM domain-containing protein 7 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:136849..138335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347994|estExt_Genemark1.C_Ctg_180015
DescriptionZinc finger SWIM domain-containing protein
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGs2AM4V@1|root,2RZB5@2759|Eukaryota,37U4I@33090|Viridiplantae,34ISB@3041|Chlorophyta
Evalue2.53e-14
Seed ortholog38833.XP_003059293.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000250.1
TranscriptId348316
TrackFilteredModels1
ProteinId347994
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347994gene_1252Tribonema minus UTEX_B_3156 geneContig_18 136849..138335 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1252_1exon_1252_1Tribonema minus UTEX_B_3156 exonContig_18 136849..137106 +
exon_1252_2exon_1252_2Tribonema minus UTEX_B_3156 exonContig_18 137584..137679 +
exon_1252_3exon_1252_3Tribonema minus UTEX_B_3156 exonContig_18 138045..138335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1252CDS_1252Tribonema minus UTEX_B_3156 CDSContig_18 136849..137106 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1252UTR3_1252Tribonema minus UTEX_B_3156 three_prime_UTRContig_18 138144..138335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347994Trimin1|347994|estExt_Genemark1.C_Ctg_180015Tribonema minus UTEX_B_3156 polypeptideContig_18 136849..138143 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1252 ID=mRNA_1252|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=645bp|location=Sequence derived from alignment at Contig_18:136849..138335+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGCCCTTGCTGTGCAGGCAGGGTGTCACAGACAACGTGACACT
GCTGGATGACTACCTGGCCGAGGTGGCCATCAGTGAAGGCGGCGAGGCGG
CTCCACAGAAGAAGGAGGAAATACTGAGGATGGTCACTTTCCTGTTCCAG
TCAACACAGGCGGACAACTGCGCTGATGTGCTGGACCACTCTCGTATCGT
AGAGTGCGTTGGCCGACAGAGCAGGCGCCGCATCTGGCTGGTGCAGAGCA
GCTCGCATAAAGGAGGGGCTTCACCGTACGTCTGTCTGGGGGGACACTAT
TGCTCATGCAGAAACTTCCAAGAAGTCTCCAAAAAAGCCACATCCTTGGT
GCTGTGCAAGCACCTGCTGGCAATCAGGCTGGCCCAGGCATTTGGCAAGC
TGTGCGTCAACGAGGTGGACGATGGCCAGCTGTATGCGTACATGCGCATA
TGAGGGGCACAAGGATTTGCAGCATCATGGCTCAGCACAGCACACGCCGA
GGTCGGCAGGCACGTAGCGCCGCGATAGCTGCAGCATCACGACTGTAGTG
ATGAGCTGCAACATCACGACCACAGCGATGAAGAACATGCTGTCGAGGGT
TCTTGCAGCAGATCACGAGCGCCATTGGGAGCACACATCAGACGA
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protein sequence of jgi.p|Trimin1|347994

>Trimin1|347994|estExt_Genemark1.C_Ctg_180015 ID=Trimin1|347994|estExt_Genemark1.C_Ctg_180015|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
MVVPLLCRQGVTDNVTLLDDYLAEVAISEGGEAAPQKKEEILRMVTFLFQ
STQADNCADVLDHSRIVECVGRQSRRRIWLVQSSSHKGGASPYVCLGGHY
CSCRNFQEVSKKATSLVLCKHLLAIRLAQAFGKLCVNEVDDGQLYAYMRI
*
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mRNA from alignment at Contig_18:136849..138335+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1252 ID=mRNA_1252|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1487bp|location=Sequence derived from alignment at Contig_18:136849..138335+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGCCCTTGCTGTGCAGGCAGGGTGTCACAGACAACGTGACACT GCTGGATGACTACCTGGCCGAGGTGGCCATCAGTGAAGGCGGCGAGGCGG CTCCACAGAAGAAGGAGGAAATACTGAGGATGGTCACTTTCCTGTTCCAG TCAACACAGGCGGACAACTGCGCTGATGTGCTGGACCACTCTCGTATCGT AGAGTGCGTTGGCCGACAGAGCAGGCGCCGCATCTGGCTGGTGCAGAGCA GCTCGCATGTAAGTGCGTGCCTATCACGAATTGCACTGTGTCCTGGAATG AACATAGAGGGCTGTTGGTTTTTTCAGCAGCTCACAGACTTGGATGCTCT CAGATCAGCAGGGCAATGGTGGCCTCAGAGGCTACATCAAAGTACCAAGT TATGTAATTCGTGGATCATGATGCTGCCGTGCCGTCACACATGCAGCATT CCAGGACTGACGACGCCGTGTCTGCCACAGCGTCTGAGCCTCACTTTGTC CCTCAGCTGAAGCTGACTGTCCACGCAGGCAGTTTGGTTGTGGGTCAACA GTCATTGAGACTGTGCCAGTGGACATGTTTGTATTGAGACATGCGAGATG CTTCACTCACAGCGTGTCATGTAGATTGTACCGCTCGTCATGCCGCATGC GCATGCATGCAGTCTACAGGCAGGAGCACTGTGAATACGGGCAATGCTTG ATGTGCATGCCGTTCATGCGGTGCTTCTGTTGCAGAAAGGAGGGGCTTCA CCGTACGTCTGTCTGGGGGGACACTATTGCTCATGCAGAAACTTCCAAGA AGTCTCCAAAAAAGCCACATCCTTGGTGCTGGTAAGTACTGAGCATGCTT GCAAGGAGGAATGATCCTGTTTTGTTTCAATATCCTTGAAACGGAGATCC AGAACTACCACTGGAATGATGTAACCCATACAGCAGCATGCTAGCCACTG CTGGTATTGGTGCCTTTGTGATCAATGCAACTGCTCAGCAATTGCTGCGA ATGCATTTTGAACGACAGAGAAATGTGCTATGTACTGTAGCTTTGCCATC ACCAGAACATGTTAGCGCCATCGGAATGTGCAGCTGAGTGTTGCACACTG CCGAGGTTGGTCTTGCGGCACCAGCTATATGCGGCTCACGTGATTTCTTA CCCCATGAGATGTTGCCATCTGCTGTTGTGTGCTTCTCCTTCACAGTGCA AGCACCTGCTGGCAATCAGGCTGGCCCAGGCATTTGGCAAGCTGTGCGTC AACGAGGTGGACGATGGCCAGCTGTATGCGTACATGCGCATATGAGGGGC ACAAGGATTTGCAGCATCATGGCTCAGCACAGCACACGCCGAGGTCGGCA GGCACGTAGCGCCGCGATAGCTGCAGCATCACGACTGTAGTGATGAGCTG CAACATCACGACCACAGCGATGAAGAACATGCTGTCGAGGGTTCTTGCAG CAGATCACGAGCGCCATTGGGAGCACACATCAGACGA
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Coding sequence (CDS) from alignment at Contig_18:136849..138335+

>mRNA_1252 ID=mRNA_1252|Name=jgi.p|Trimin1|347994|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_18:136849..138335+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGCCCTTGCTGTGCAGGCAGGGTGTCACAGACAACGTGACACT
GCTGGATGACTACCTGGCCGAGGTGGCCATCAGTGAAGGCGGCGAGGCGG
CTCCACAGAAGAAGGAGGAAATACTGAGGATGGTCACTTTCCTGTTCCAG
TCAACACAGGCGGACAACTGCGCTGATGTGCTGGACCACTCTCGTATCGT
AGAGTGCGTTGGCCGACAGAGCAGGCGCCGCATCTGGCTGGTGCAGAGCA
GCTCGCATAAAGGAGGGGCTTCACCGTACGTCTGTCTGGGGGGACACTAT
TGCTCATGCAGAAACTTCCAAGAAGTCTCCAAAAAAGCCACATCCTTGGT
GCTGTGCAAGCACCTGCTGGCAATCAGGCTGGCCCAGGCATTTGGCAAGC
TGTGCGTCAACGAGGTGGACGATGGCCAGCTGTATGCGTACATGCGCATA
TGA
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