mRNA_12493 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|90432
Unique NamemRNA_12493
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|90432 vs. uniprot
Match: A0A835YK23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK23_9STRA)

HSP 1 Score: 270 bits (690), Expect = 7.800e-89
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 3 
Query:  102 MTTREAERCVSAGGCGCCPRRPHHLCPVTWFGPRNVAGGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLYFLTLLTFCFRGGRHPWPXXXXXXXXXXXPLFVPPPSREGRPFVHRPGSSPARARALTGVALDRHDTALRRCHECLATLRYPLYPPPRRHRQPAVP 623
            MTTREAERCVSAGGCGCCPRRPHHLCPVTWFGPRNVAGGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLYFLTLLTFCFRGGRHPWPXXXXXXXXXXXPLFVPPPSREGRPFVHRPGSSPARARALTGVALDRHDTALRRCHECLATLRYPLYPPPRRHRQPAVP
Sbjct:    1 MTTREAERCVSAGGCGCCPRRPHHLCPVTWFGPRNVAGGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLYFLTLLTFCFRGGRHPWPXXXXXXXXXXXPLFVPPPSREGRPFVHRPGSSPARARALTGVALDRHDTALRRCHECLATLRYPLYPPPRRHRQPAVP 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|90432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YK23_9STRA7.800e-89100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:576319..577130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|90432|CE90431_421
Hectar predicted targeting categoryother localisation
TranscriptId90754
TrackFilteredModels1
ProteinId90432
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|90432gene_12493Tribonema minus UTEX_B_3156 geneContig_77 576319..577130 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12493_1exon_12493_1Tribonema minus UTEX_B_3156 exonContig_77 576319..577130 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12493UTR5_12493Tribonema minus UTEX_B_3156 five_prime_UTRContig_77 576319..576419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12493CDS_12493Tribonema minus UTEX_B_3156 CDSContig_77 576420..576944 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12493UTR3_12493Tribonema minus UTEX_B_3156 three_prime_UTRContig_77 576945..577130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|90432Trimin1|90432|CE90431_421Tribonema minus UTEX_B_3156 polypeptideContig_77 576420..576944 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12493 ID=mRNA_12493|Name=jgi.p|Trimin1|90432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=812bp|location=Sequence derived from alignment at Contig_77:576319..577130+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCTTGGTGCGTTGAGCATCTGCTGAGCGGCTGCGGCAGCCATCTGCG
GCGGTGGCGCCGCCACCATTATGGCCGGACATCACTCGTGAGAGAGAGGA
GATGACGACGAGAGAGGCAGAGCGCTGCGTATCGGCAGGCGGGTGCGGAT
GTTGCCCCCGCCGCCCGCACCATTTGTGTCCAGTAACATGGTTCGGGCCG
CGCAACGTGGCTGGGGGCTCATGCGCCGCCGCTGCTGCTGCCGCCACCGC
TGCTCACTGCGGCGGCGCGCGGCAGCAGCAGCGCCGCGCCATGCAGCCTC
CGCCACATGTGCCTACCAGCGCCGCTGCTTGGTTATATTTTTTGACCCTG
TTGACATTCTGTTTTCGTGGGGGCCGTCATCCCTGGCCGCCCTCCCCCCC
CCCCCCCCCCCCCCCCGCAGCTCCACTCTTCGTGCCCCCGCCCTCTCGTG
AGGGCAGGCCATTTGTGCATAGGCCCGGCAGTAGCCCCGCACGTGCGCGG
GCTTTGACGGGCGTCGCCCTAGATAGGCACGACACAGCCCTAAGGCGTTG
CCACGAGTGCCTAGCCACGCTCCGCTACCCCCTCTACCCCCCGCCCCGCC
GCCATCGCCAACCAGCTGTACCATGAGAGTTTTAGTGCTGGAAGGGGGTG
GGTGTTCTGGGGGGGTCGCGGAGCCTCCAGCTTACCCCATTTGTTGCCAT
CAGTAGCCACGCTCTCGGTGCAGCGCGCCGATTAGATAGACGTGAGGCAT
GCTCAGTACCCCACCCCCACCTATTACTTCTCAATACTAGACATCTGCTT
TTTCGGTCGACT
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protein sequence of jgi.p|Trimin1|90432

>Trimin1|90432|CE90431_421 ID=Trimin1|90432|CE90431_421|Name=jgi.p|Trimin1|90432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MTTREAERCVSAGGCGCCPRRPHHLCPVTWFGPRNVAGGSCAAAAAAATA
AHCGGARQQQRRAMQPPPHVPTSAAAWLYFLTLLTFCFRGGRHPWPPSPP
PPPPPAAPLFVPPPSREGRPFVHRPGSSPARARALTGVALDRHDTALRRC
HECLATLRYPLYPPPRRHRQPAVP*
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mRNA from alignment at Contig_77:576319..577130+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12493 ID=mRNA_12493|Name=jgi.p|Trimin1|90432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=812bp|location=Sequence derived from alignment at Contig_77:576319..577130+ (Tribonema minus UTEX_B_3156 )
CAGCCTTGGTGCGTTGAGCATCTGCTGAGCGGCTGCGGCAGCCATCTGCG
GCGGTGGCGCCGCCACCATTATGGCCGGACATCACTCGTGAGAGAGAGGA
GATGACGACGAGAGAGGCAGAGCGCTGCGTATCGGCAGGCGGGTGCGGAT
GTTGCCCCCGCCGCCCGCACCATTTGTGTCCAGTAACATGGTTCGGGCCG
CGCAACGTGGCTGGGGGCTCATGCGCCGCCGCTGCTGCTGCCGCCACCGC
TGCTCACTGCGGCGGCGCGCGGCAGCAGCAGCGCCGCGCCATGCAGCCTC
CGCCACATGTGCCTACCAGCGCCGCTGCTTGGTTATATTTTTTGACCCTG
TTGACATTCTGTTTTCGTGGGGGCCGTCATCCCTGGCCGCCCTCCCCCCC
CCCCCCCCCCCCCCCCGCAGCTCCACTCTTCGTGCCCCCGCCCTCTCGTG
AGGGCAGGCCATTTGTGCATAGGCCCGGCAGTAGCCCCGCACGTGCGCGG
GCTTTGACGGGCGTCGCCCTAGATAGGCACGACACAGCCCTAAGGCGTTG
CCACGAGTGCCTAGCCACGCTCCGCTACCCCCTCTACCCCCCGCCCCGCC
GCCATCGCCAACCAGCTGTACCATGAGAGTTTTAGTGCTGGAAGGGGGTG
GGTGTTCTGGGGGGGTCGCGGAGCCTCCAGCTTACCCCATTTGTTGCCAT
CAGTAGCCACGCTCTCGGTGCAGCGCGCCGATTAGATAGACGTGAGGCAT
GCTCAGTACCCCACCCCCACCTATTACTTCTCAATACTAGACATCTGCTT
TTTCGGTCGACT
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Coding sequence (CDS) from alignment at Contig_77:576319..577130+

>mRNA_12493 ID=mRNA_12493|Name=jgi.p|Trimin1|90432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_77:576319..577130+ (Tribonema minus UTEX_B_3156 )
ATGACGACGAGAGAGGCAGAGCGCTGCGTATCGGCAGGCGGGTGCGGATG
TTGCCCCCGCCGCCCGCACCATTTGTGTCCAGTAACATGGTTCGGGCCGC
GCAACGTGGCTGGGGGCTCATGCGCCGCCGCTGCTGCTGCCGCCACCGCT
GCTCACTGCGGCGGCGCGCGGCAGCAGCAGCGCCGCGCCATGCAGCCTCC
GCCACATGTGCCTACCAGCGCCGCTGCTTGGTTATATTTTTTGACCCTGT
TGACATTCTGTTTTCGTGGGGGCCGTCATCCCTGGCCGCCCTCCCCCCCC
CCCCCCCCCCCCCCCGCAGCTCCACTCTTCGTGCCCCCGCCCTCTCGTGA
GGGCAGGCCATTTGTGCATAGGCCCGGCAGTAGCCCCGCACGTGCGCGGG
CTTTGACGGGCGTCGCCCTAGATAGGCACGACACAGCCCTAAGGCGTTGC
CACGAGTGCCTAGCCACGCTCCGCTACCCCCTCTACCCCCCGCCCCGCCG
CCATCGCCAACCAGCTGTACCATGA
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