mRNA_12491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133216
Unique NamemRNA_12491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A835YKH7_9STRA (BZIP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKH7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.340e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 KRARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDCC 171
            KRARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDCC
Sbjct:    1 KRARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDCC 57
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: V5RGX6_9STRA (Aureochrome 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=V5RGX6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.400e-10
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    4 RARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            R RNR HAKRSR RKK  +E L+ Q+LALR ENL LRQLV  K+P+ AD +L+ C
Sbjct:  250 RERNREHAKRSRMRKKFMLESLQAQMLALRKENLRLRQLVATKLPDKADTILRGC 304
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A482V2E5_9ARCH (BZIP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V2E5_9ARCH)

HSP 1 Score: 59.7 bits (143), Expect = 4.830e-9
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    4 RARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            R RNR HAK+SR RKK  ++ L++QLL+LR EN+ LR++V++ IP+ A ++LQ+C
Sbjct:   75 RERNREHAKKSRVRKKVLLDTLQDQLLSLRRENMVLRRVVIDNIPQAAARILQEC 129
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A7S2MF67_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MF67_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.520e-9
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 RARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDCC 171
            R RNR HAKRSR RKK  +E L+EQ+  L+ EN+ LR L+  KIP+ A K++ +CC
Sbjct:  286 RQRNREHAKRSRVRKKFMLESLQEQVRGLQKENVHLRMLIQEKIPQHAQKIIDECC 341
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A7S1YJF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YJF3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.020e-8
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 RARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDCC 171
            R RNR HAKRSR RKK  +E L+EQ+ AL+ +N+ LR ++  KIP  A K++ +CC
Sbjct:  346 RQRNREHAKRSRVRKKFMLESLQEQVRALQKDNVELRMIIQEKIPNSAQKIISECC 401
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A126X057_SARFS (Putative LOV domain-containing protein n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A126X057_SARFS)

HSP 1 Score: 57.8 bits (138), Expect = 2.070e-8
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 RNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            RNR HAKRSR RKK  +E L+EQLLA+R +NL LRQ+V   +P+ A KV + C
Sbjct:   34 RNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKC 86
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A126WWZ7_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A126WWZ7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.610e-8
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 RNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            RNR HAKRSR RKK  +E L+EQLLA+R +NL LRQ+V   +P+ A KV + C
Sbjct:  178 RNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKC 230
[Close]
BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A126X320_SARHM (Putative LOV domain-containing protein n=4 Tax=Sargassum TaxID=3015 RepID=A0A126X320_SARHM)

HSP 1 Score: 57.8 bits (138), Expect = 2.610e-8
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 RNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            RNR HAKRSR RKK  +E L+EQLLA+R +NL LRQ+V   +P+ A KV + C
Sbjct:  180 RNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKC 232
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BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: D7FRW8_ECTSI (Aureochrome 4 n=2 Tax=Ectocarpales TaxID=2877 RepID=D7FRW8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.120e-8
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 RARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            R RNR HAKRSR RKK  +E L+EQLLA+R +NL LRQ+V   +P+ A  V + C
Sbjct:   44 RERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEASTVFEKC 98
[Close]
BLAST of jgi.p|Trimin1|133216 vs. uniprot
Match: A0A835Z0M1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.300e-8
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    4 RARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGADKVLQDC 168
            R RNR HAKRSR RKK  ++ L++QLLALR EN+ LRQ+V   +PE A ++ + C
Sbjct:   67 RERNREHAKRSRVRKKFMLDCLQDQLLALRKENMNLRQVVKEHMPEVATQIFEKC 121
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133216 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835YKH7_9STRA3.340e-30100.00BZIP domain-containing protein (Fragment) n=1 Tax=... [more]
V5RGX6_9STRA8.400e-1061.82Aureochrome 1 n=3 Tax=Monodopsidaceae TaxID=425072... [more]
A0A482V2E5_9ARCH4.830e-952.73BZIP domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S2MF67_9STRA7.520e-953.57Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YJF3_9STRA1.020e-851.79Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A126X057_SARFS2.070e-858.49Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126WWZ7_9PHAE2.610e-858.49Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126X320_SARHM2.610e-858.49Putative LOV domain-containing protein n=4 Tax=Sar... [more]
D7FRW8_ECTSI4.120e-856.36Aureochrome 4 n=2 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A835Z0M1_9STRA4.300e-854.55Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:575172..575342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133216|gw1.77.23.1
BRITEko00000,ko01000,ko01001
KEGG koko:K20715
EC2.7.11.1
GOsGO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009637,GO:0009638,GO:0009657,GO:0009658,GO:0009785,GO:0009881,GO:0009882,GO:0009898,GO:0009902,GO:0009903,GO:0009904,GO:0009986,GO:0009987,GO:0010119,GO:0010155,GO:0010181,GO:0010359,GO:0010360,GO:0010361,GO:0010362,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019750,GO:0022898,GO:0023052,GO:0030522,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032553,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035556,GO:0036094,GO:0036211,GO:0038023,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043271,GO:0043412,GO:0044070,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046777,GO:0048037,GO:0048511,GO:0048519,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051644,GO:0051649,GO:0051656,GO:0051667,GO:0051716,GO:0060089,GO:0065007,GO:0065009,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0104004,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903792,GO:1903959,GO:1903960,GO:1904062
Descriptionnegative regulation of anion channel activity by blue light
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0610@1|root,2QPPH@2759|Eukaryota
Evalue6.76e-09
Seed ortholog2880.D7FRW8
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId133538
TrackFilteredModels1
ProteinId133216
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133216gene_12491Tribonema minus UTEX_B_3156 geneContig_77 575172..575342 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12491_1exon_12491_1Tribonema minus UTEX_B_3156 exonContig_77 575172..575342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12491CDS_12491Tribonema minus UTEX_B_3156 CDSContig_77 575172..575342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133216Trimin1|133216|gw1.77.23.1Tribonema minus UTEX_B_3156 polypeptideContig_77 575172..575342 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12491 ID=mRNA_12491|Name=jgi.p|Trimin1|133216|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_77:575172..575342+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCGCGCCCGCAACCGGCTGCACGCCAAGCGCTCCCGCACCCGCAAAAA
GCAGTGCATGGAGGTCCTGGAGGAGCAGCTGCTGGCGCTGCGGTCCGAGA
ACCTGGGCCTGCGGCAGCTCGTCCTCAACAAGATCCCCGAGGGCGCGGAC
AAGGTGCTGCAGGACTGCTGT
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protein sequence of jgi.p|Trimin1|133216

>Trimin1|133216|gw1.77.23.1 ID=Trimin1|133216|gw1.77.23.1|Name=jgi.p|Trimin1|133216|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=57bp
KRARNRLHAKRSRTRKKQCMEVLEEQLLALRSENLGLRQLVLNKIPEGAD
KVLQDCC
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mRNA from alignment at Contig_77:575172..575342+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12491 ID=mRNA_12491|Name=jgi.p|Trimin1|133216|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_77:575172..575342+ (Tribonema minus UTEX_B_3156 )
AAGCGCGCCCGCAACCGGCTGCACGCCAAGCGCTCCCGCACCCGCAAAAA
GCAGTGCATGGAGGTCCTGGAGGAGCAGCTGCTGGCGCTGCGGTCCGAGA
ACCTGGGCCTGCGGCAGCTCGTCCTCAACAAGATCCCCGAGGGCGCGGAC
AAGGTGCTGCAGGACTGCTGT
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Coding sequence (CDS) from alignment at Contig_77:575172..575342+

>mRNA_12491 ID=mRNA_12491|Name=jgi.p|Trimin1|133216|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=171bp|location=Sequence derived from alignment at Contig_77:575172..575342+ (Tribonema minus UTEX_B_3156 )
AAGCGCGCCCGCAACCGGCTGCACGCCAAGCGCTCCCGCACCCGCAAAAA
GCAGTGCATGGAGGTCCTGGAGGAGCAGCTGCTGGCGCTGCGGTCCGAGA
ACCTGGGCCTGCGGCAGCTCGTCCTCAACAAGATCCCCGAGGGCGCGGAC
AAGGTGCTGCAGGACTGCTGT
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