mRNA_12432 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170337
Unique NamemRNA_12432
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A835YM49_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM49_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.850e-65
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAPAASKARKSASGGSSSSLGSGRAIGIR 303
            QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAPAASKARKSASGGSSSSLGSGRAIGIR
Sbjct:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAPAASKARKSASGGSSSSLGSGRAIGIR 101
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A225V3I2_9STRA (Cell division cycle protein 20 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V3I2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.630e-37
Identity = 71/96 (73.96%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAP--AASKARKSASGGSSSSLGS 282
            QVC+L WS TEKELLSSHGY  N LCLWKYPSM KVKEL GHT RVLH+A SPDG+TVVSGAADETLRFW VF P   A KA  S +  SSSSL S
Sbjct:  248 QVCSLLWSTTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAGSPDGETVVSGAADETLRFWKVFGPNRKARKAGSSTAELSSSSLSS 343
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A7S2KKP2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KKP2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.270e-36
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAP 225
            QVC LQW+  EKE+LSSHG+  N LCLWKYP+M KVKEL GHT RVLHMA SPDG TVVS AADETLRFWNVFAP
Sbjct:   56 QVCGLQWNPFEKEILSSHGFARNQLCLWKYPTMAKVKELDGHTARVLHMACSPDGSTVVSAAADETLRFWNVFAP 130
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: H3GL68_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GL68_PHYRM)

HSP 1 Score: 138 bits (347), Expect = 2.490e-36
Identity = 72/96 (75.00%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAP--AASKARKSASGGSSSSLGS 282
            QVC+L WS TEKELLSSHGY  N LCLWKYPSM KVKEL GHT RVLH+A SPDG+TVVSGAADETLRFW VF P   A KA  SA+  SSSSL S
Sbjct:  437 QVCSLLWSATEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAADETLRFWKVFGPNRKARKAGSSAAELSSSSLSS 532
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A0N7L6D5_PLAHL (Cell division cycle protein 20 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6D5_PLAHL)

HSP 1 Score: 137 bits (344), Expect = 6.460e-36
Identity = 71/96 (73.96%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAP--AASKARKSASGGSSSSLGS 282
            QVC+L WS TEKELLSSHGY  N LCLWKYPSM KVKEL GHT RVLH+A SPDG+TVVSGAADETLRFW VF P   A KA  S +  SSSSL S
Sbjct:  434 QVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAADETLRFWKVFGPNRKARKAGSSTTELSSSSLSS 529
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A484EGT9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT9_BRELC)

HSP 1 Score: 137 bits (344), Expect = 6.660e-36
Identity = 71/96 (73.96%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAP--AASKARKSASGGSSSSLGS 282
            QVC+L WS TEKELLSSHGY  N LCLWKYPSM KVKEL GHT RVLH+A SPDG+TVVSGAADETLRFW VF P   A KA  S +  SSSSL S
Sbjct:  437 QVCSLLWSSTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAADETLRFWRVFGPNRKARKAGSSTTDLSSSSLSS 532
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A5D6XRA5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRA5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.800e-36
Identity = 70/94 (74.47%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAP--AASKARKSASGGSSSSL 276
            QVCAL WS TEKE+LSSHGY  N LCLWKYPSM KVKEL GHT RVLH+A SPDG TVVSGAADETLRFW VF P   ASKA  S +  SSS L
Sbjct:  342 QVCALLWSTTEKEILSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGSTVVSGAADETLRFWKVFGPNRKASKAGSSGAELSSSRL 435
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A6H5KU25_9PHAE (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU25_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 9.250e-36
Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAPAASKARKSASGGSSSSLG 279
            QV +L WS TEKELLSSHGY +N LCLWKYPSMVK KEL GHT RVLHMA SPDG+TVVSGA DETLRFW+VFAP +  +    +GG  S+ G
Sbjct:  434 QVLSLLWSTTEKELLSSHGYAENQLCLWKYPSMVKTKELSGHTSRVLHMAASPDGRTVVSGAGDETLRFWDVFAPPSKSSSDGGAGGRGSAAG 526
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: A0A5J4Y0D7_9CHLO (ANAPC4_WD40 domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y0D7_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 9.970e-36
Identity = 67/90 (74.44%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAPA--ASKARKSASGGS 264
            QVCALQWSR E+E+LSSHG+  N LCLWKYPSMVKV E  GHT RVLHMAQSPDG TVVS AADETLRFW VFA A  A KA+ S++G S
Sbjct:  339 QVCALQWSRHEREILSSHGFSQNQLCLWKYPSMVKVAEFTGHTSRVLHMAQSPDGTTVVSAAADETLRFWRVFAEASVAQKAKPSSTGNS 428
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BLAST of jgi.p|Trimin1|170337 vs. uniprot
Match: D0N7K8_PHYIT (Cell division cycle protein 20 n=26 Tax=Phytophthora TaxID=4783 RepID=D0N7K8_PHYIT)

HSP 1 Score: 135 bits (341), Expect = 1.000e-35
Identity = 66/85 (77.65%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMAQSPDGQTVVSGAADETLRFWNVFAPAASKARKSAS 255
            QVC+L WS TEKELLSSHGY  N LCLWKYPSM KVKEL GHT RVLH+A SPDG+TVVSGAADETLRFW VF P   KARK+ S
Sbjct:  385 QVCSLLWSATEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAADETLRFWKVFGPNR-KARKAGS 468
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170337 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM49_9STRA1.850e-65100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A225V3I2_9STRA7.630e-3773.96Cell division cycle protein 20 (Fragment) n=1 Tax=... [more]
A0A7S2KKP2_9STRA2.270e-3678.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
H3GL68_PHYRM2.490e-3675.00Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0N7L6D5_PLAHL6.460e-3673.96Cell division cycle protein 20 n=1 Tax=Plasmopara ... [more]
A0A484EGT9_BRELC6.660e-3673.96Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A5D6XRA5_9STRA7.800e-3674.47Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6H5KU25_9PHAE9.250e-3669.89ANAPC4_WD40 domain-containing protein n=2 Tax=Ecto... [more]
A0A5J4Y0D7_9CHLO9.970e-3674.44ANAPC4_WD40 domain-containing protein n=1 Tax=Treb... [more]
D0N7K8_PHYIT1.000e-3577.65Cell division cycle protein 20 n=26 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:701165..702661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170337|e_gw1.71.52.1
BRITEko00000,ko00001,ko00002,ko03036,ko04121
KEGG ModuleM00389
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko05166,ko05203,map04110,map04111,map04113,map04114,map04120,map05166,map05203
KEGG koko:K03363
DescriptionWD domain, G-beta repeat
COG categoryDO
Max annot lvl4776|Peronosporales
EggNOG OGsCOG2319@1|root,KOG0305@2759|Eukaryota,3Q812@4776|Peronosporales
Evalue4.08e-37
Seed ortholog164328.Phyra77091
Hectar predicted targeting categoryother localisation
TranscriptId170659
TrackFilteredModels1
ProteinId170337
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170337gene_12432Tribonema minus UTEX_B_3156 geneContig_71 701165..702661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170337Trimin1|170337|e_gw1.71.52.1Tribonema minus UTEX_B_3156 polypeptideContig_71 701165..702661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12432_2exon_12432_2Tribonema minus UTEX_B_3156 exonContig_71 701165..701365 -
exon_12432_1exon_12432_1Tribonema minus UTEX_B_3156 exonContig_71 702557..702661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12432CDS_12432Tribonema minus UTEX_B_3156 CDSContig_71 702557..702661 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12432 ID=mRNA_12432|Name=jgi.p|Trimin1|170337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_71:701165..702661- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTCTGCGCCCTCCAGTGGAGCCGCACTGAGAAGGAGCTGCTATCGAG
CCATGGCTACATTGACAACTCGCTGTGCCTGTGGAAGTACCCCAGCATGG
TCAAGGTGAAGGAGCTCAAGGGGCACACAAAGCGCGTACTGCACATGGCT
CAGTCGCCCGACGGCCAGACTGTCGTGTCCGGTGCTGCCGACGAGACGCT
AAGGTTCTGGAATGTGTTCGCACCAGCGGCGTCCAAGGCTCGCAAGAGCG
CGTCTGGAGGGTCTTCGAGTTCTCTTGGCAGTGGGCGCGCAATCGGCATC
CGCTAA
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protein sequence of jgi.p|Trimin1|170337

>Trimin1|170337|e_gw1.71.52.1 ID=Trimin1|170337|e_gw1.71.52.1|Name=jgi.p|Trimin1|170337|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp
QVCALQWSRTEKELLSSHGYIDNSLCLWKYPSMVKVKELKGHTKRVLHMA
QSPDGQTVVSGAADETLRFWNVFAPAASKARKSASGGSSSSLGSGRAIGI
R*
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mRNA from alignment at Contig_71:701165..702661-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12432 ID=mRNA_12432|Name=jgi.p|Trimin1|170337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1497bp|location=Sequence derived from alignment at Contig_71:701165..702661- (Tribonema minus UTEX_B_3156 )
CAGGTCTGCGCCCTCCAGTGGAGCCGCACTGAGAAGGAGCTGCTATCGAG
CCATGGCTACATTGACAACTCGCTGTGCCTGTGGAAGTACCCCAGCATGG
TCAAGGTAGGCATTGCACTTGAAGCGTCTACTGAAAGAGTACAGTGGTGC
ATATAACTTGGTGATCATTGATTGTGGTAGCGGTGTGGTTCACCGACACC
ATGATCATCTGCTAGCTCCGCTTGCTAGCTCGTGATCAGGATTGTCAGAT
GCTATACTCATGGATTTTGTCGCAAACAATGTGTCAGAACCACCATGAAA
CCTGCAGGAGTGTGGTGATGCTCAAATGCAATCAACTTATGCACCGTTGC
AACCATGAGGCGAGGCACTAGTTCAGTGCCGTAGCAACTACAGAATGCAT
CAGTCATGGCCTACCTTGTGGCAAATGACAGCTTGTACTCGTTGTACAGG
CTTCATCTCGCCATGTGTCTCCAGCCTCTTGCTGCCATCAAGCAAAGGGC
ACTTGAATCAACATATTACCGTATAATTATCTTCAAGACTTGTCCTTCAG
GTCACCCTGCCCTTTGTGACACAGTATACTCAACACACCTGAACGCCCAT
TTCGTCTGCTGGGCGCCCACTATAGCAGTATTGTGGGGAATCGATCGTAC
GGTGCAGTGGGCGTAGGTTTTGGTGTAAAGAGCCGAATGGCCTGCAACAA
TTCGTGGCGCACCTTGTCAACATCAAATCTGAATCGACATGCTGTTAGCC
TCCATACTCAGAGAAATACTCACCTCCACATGGCGCTTTTATAAATGGAG
CCATCTGCAAGCGGCTGCCTCAGCCTGCATGTACAGCAGGCCTGAGCCTC
GTTCTATCCACACAGTGAACGGCGACGCAAGCGCAATAAAGAGAGGTGTT
TTGCCTGTCCAGTTGCTGCAAGGTTCACTTGGTCAGCTGGCCTGCAGGGC
ATGCCGCATGTGGTTATCTGATCATCGCACCGTGGCAGGGACAAGGCACA
TCAATGAGCTCAAGACCTACTGTGCACATGCATGCGTACTGCACTGGCTT
ACTACTATTTCAAGTACTTCAAAGCGCATCAAAACGCACAGTGCTCCGCT
CCTGCTGCTCGCTTGAAGGCCGTCTCTCGGTGCCCCCAGATGAAGAAGCT
CAAGGGCCACCACAAGTTCAGTGCCGTTGCTACTTCAAAAATGCACCAGT
CATTCTCTACCTTCTTGCATTGGCAGCGTTCAGTACAAGCATTGAATCGC
AAGGCTTAGCTGCTGCTTCGCTTGCGGCCTACCTCGGAACCCCCAGGTGA
AGGAGCTCAAGGGGCACACAAAGCGCGTACTGCACATGGCTCAGTCGCCC
GACGGCCAGACTGTCGTGTCCGGTGCTGCCGACGAGACGCTAAGGTTCTG
GAATGTGTTCGCACCAGCGGCGTCCAAGGCTCGCAAGAGCGCGTCTGGAG
GGTCTTCGAGTTCTCTTGGCAGTGGGCGCGCAATCGGCATCCGCTAA
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Coding sequence (CDS) from alignment at Contig_71:701165..702661-

>mRNA_12432 ID=mRNA_12432|Name=jgi.p|Trimin1|170337|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_71:701165..702661- (Tribonema minus UTEX_B_3156 )
CAGGTCTGCGCCCTCCAGTGGAGCCGCACTGAGAAGGAGCTGCTATCGAG
CCATGGCTACATTGACAACTCGCTGTGCCTGTGGAAGTACCCCAGCATGG
TCAAGGTGAAGGAGCTCAAGGGGCACACAAAGCGCGTACTGCACATGGCT
CAGTCGCCCGACGGCCAGACTGTCGTGTCCGGTGCTGCCGACGAGACGCT
AAGGTTCTGGAATGTGTTCGCACCAGCGGCGTCCAAGGCTCGCAAGAGCG
CGTCTGGAGGGTCTTCGAGTTCTCTTGGCAGTGGGCGCGCAATCGGCATC
CGCTAA
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