mRNA_12423 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170326
Unique NamemRNA_12423
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170326 vs. uniprot
Match: A0A836C9K2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K2_9STRA)

HSP 1 Score: 350 bits (898), Expect = 3.670e-121
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1 
Query:    1 MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTLAVRACRGLQAISVANGLLAEAKVAXXXXXXXXXXXXXXXXXXXXDVDRALELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGIEPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYASTD 609
            MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTLAVRACRGLQAISVANGLLAEAKVAXXXXXXXXXXXXXXXXXXXXDVDRALELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGIEPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYASTD
Sbjct:    1 MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTLAVRACRGLQAISVANGLLAEAKVAXXXXXXXXXXXXXXXXXXXXDVDRALELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGIEPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYASTD 203
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170326 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9K2_9STRA3.670e-121100.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:543638..544249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170326|e_gw1.71.66.1
Hectar predicted targeting categoryother localisation
TranscriptId170648
TrackFilteredModels1
ProteinId170326
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170326gene_12423Tribonema minus UTEX_B_3156 geneContig_71 543638..544249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12423_1exon_12423_1Tribonema minus UTEX_B_3156 exonContig_71 543638..544249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12423CDS_12423Tribonema minus UTEX_B_3156 CDSContig_71 543638..544249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170326Trimin1|170326|e_gw1.71.66.1Tribonema minus UTEX_B_3156 polypeptideContig_71 543638..544249 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12423 ID=mRNA_12423|Name=jgi.p|Trimin1|170326|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_71:543638..544249+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAGGACGGACACAAGCTGGAGCTGTCAACTTGTCATCAAGCGCT
TAACATTATGGCGCGTTCCGGCGACATGGTGCGCCCACTGCTCATAATCA
TGCTCATGAAGCAGGTGGGCCTCACGCCGGACATGCAGGCATACACCTTG
GCCGTACGTGCTTGCAGGGGACTGCAGGCGATATCGGTAGCCAACGGCCT
GCTGGCAGAGGCTAAAGTCGCAGGCCTGGCGCCAGACACTGGCATGTACT
CTGCCATGATCAAAGCATGCCGGCCGTCACAGGACGTAGACCGCGCGCTC
GAGCTTTTCCATGAAATGGAGGCGACACCGAGCTGCGCGTTTATGGTGAA
AGACTGGCGCATATGGAGCAACCTCATGGCCGCTCTAAATGCAGGGGGGC
AGCCAGAGAAAGTCAGTGAGAAATTTGAGGAGATGGTGAAGCGCGGGATC
GAGCCCAGCGTGTGCATTTACTCGCACACTCTGGCGGCGCATGCTGCACG
CGGCCACCATGCCCAAGTGCACGACCTGCTTGCGCGCATGCCGGCGCTTG
GCGCTGCGGACAAGGGTGAGTGCCATGCTTCAATCATATCAGCCTACGCT
TCAACCGACTAG
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protein sequence of jgi.p|Trimin1|170326

>Trimin1|170326|e_gw1.71.66.1 ID=Trimin1|170326|e_gw1.71.66.1|Name=jgi.p|Trimin1|170326|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTL
AVRACRGLQAISVANGLLAEAKVAGLAPDTGMYSAMIKACRPSQDVDRAL
ELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGI
EPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYA
STD*
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mRNA from alignment at Contig_71:543638..544249+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12423 ID=mRNA_12423|Name=jgi.p|Trimin1|170326|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_71:543638..544249+ (Tribonema minus UTEX_B_3156 )
ATGGTGCAGGACGGACACAAGCTGGAGCTGTCAACTTGTCATCAAGCGCT
TAACATTATGGCGCGTTCCGGCGACATGGTGCGCCCACTGCTCATAATCA
TGCTCATGAAGCAGGTGGGCCTCACGCCGGACATGCAGGCATACACCTTG
GCCGTACGTGCTTGCAGGGGACTGCAGGCGATATCGGTAGCCAACGGCCT
GCTGGCAGAGGCTAAAGTCGCAGGCCTGGCGCCAGACACTGGCATGTACT
CTGCCATGATCAAAGCATGCCGGCCGTCACAGGACGTAGACCGCGCGCTC
GAGCTTTTCCATGAAATGGAGGCGACACCGAGCTGCGCGTTTATGGTGAA
AGACTGGCGCATATGGAGCAACCTCATGGCCGCTCTAAATGCAGGGGGGC
AGCCAGAGAAAGTCAGTGAGAAATTTGAGGAGATGGTGAAGCGCGGGATC
GAGCCCAGCGTGTGCATTTACTCGCACACTCTGGCGGCGCATGCTGCACG
CGGCCACCATGCCCAAGTGCACGACCTGCTTGCGCGCATGCCGGCGCTTG
GCGCTGCGGACAAGGGTGAGTGCCATGCTTCAATCATATCAGCCTACGCT
TCAACCGACTAG
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Coding sequence (CDS) from alignment at Contig_71:543638..544249+

>mRNA_12423 ID=mRNA_12423|Name=jgi.p|Trimin1|170326|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_71:543638..544249+ (Tribonema minus UTEX_B_3156 )
ATGGTGCAGGACGGACACAAGCTGGAGCTGTCAACTTGTCATCAAGCGCT
TAACATTATGGCGCGTTCCGGCGACATGGTGCGCCCACTGCTCATAATCA
TGCTCATGAAGCAGGTGGGCCTCACGCCGGACATGCAGGCATACACCTTG
GCCGTACGTGCTTGCAGGGGACTGCAGGCGATATCGGTAGCCAACGGCCT
GCTGGCAGAGGCTAAAGTCGCAGGCCTGGCGCCAGACACTGGCATGTACT
CTGCCATGATCAAAGCATGCCGGCCGTCACAGGACGTAGACCGCGCGCTC
GAGCTTTTCCATGAAATGGAGGCGACACCGAGCTGCGCGTTTATGGTGAA
AGACTGGCGCATATGGAGCAACCTCATGGCCGCTCTAAATGCAGGGGGGC
AGCCAGAGAAAGTCAGTGAGAAATTTGAGGAGATGGTGAAGCGCGGGATC
GAGCCCAGCGTGTGCATTTACTCGCACACTCTGGCGGCGCATGCTGCACG
CGGCCACCATGCCCAAGTGCACGACCTGCTTGCGCGCATGCCGGCGCTTG
GCGCTGCGGACAAGGGTGAGTGCCATGCTTCAATCATATCAGCCTACGCT
TCAACCGACTAG
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