mRNA_12414 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170320
Unique NamemRNA_12414
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|170320 vs. uniprot
Match: A0A835YUB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.470e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MLHLFLEQKRQVDSGDFNKPLGALPASLTYIKVVGCYFDQALGPLPPALVHLAVDSAFT 177
            MLHLFLEQKRQVDSGDFNKPLGALPASLTYIKVVGCYFDQALGPLPPALVHLAVDSAFT
Sbjct:    1 MLHLFLEQKRQVDSGDFNKPLGALPASLTYIKVVGCYFDQALGPLPPALVHLAVDSAFT 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170320 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUB6_9STRA1.470e-30100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:446376..447164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170320|e_gw1.71.54.1
Hectar predicted targeting categoryother localisation
TranscriptId170642
TrackFilteredModels1
ProteinId170320
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170320gene_12414Tribonema minus UTEX_B_3156 geneContig_71 446376..447164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12414_1exon_12414_1Tribonema minus UTEX_B_3156 exonContig_71 446376..447164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12414CDS_12414Tribonema minus UTEX_B_3156 CDSContig_71 446376..447164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170320Trimin1|170320|e_gw1.71.54.1Tribonema minus UTEX_B_3156 polypeptideContig_71 446376..447164 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12414 ID=mRNA_12414|Name=jgi.p|Trimin1|170320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_71:446376..447164- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCATCTGTTTCTCGAACAGAAACGTCAAGTGGACAGCGGAGACTT
CAACAAGCCCCTGGGCGCTCTGCCCGCATCGCTCACCTACATCAAGGTTG
TTGGGTGTTATTTCGACCAGGCGTTGGGTCCGCTGCCGCCGGCGCTGGTT
CACCTTGCTGTTGATAGCGCTTTCACCCGGGCGCTGGGGCCGCTGCCGCC
GATGCTGCGCACGCTGTCGCTGGGAAGATTGCTCGATCACTCCCTTGGCG
TGCTGCCGACGGCGCTGATGCACTTGAAGCTGGGCGCAGCCTTCAACCAG
CCTCTAGGCGCGCTGCCGCCCAAGCTGACCGTGCTCAGCCTGGGCAAGGA
CTTCAATCGCCCACTGCGGCCGCTGCCGCCGTCGCTGGCGGAGCTGAGGA
TCGGCGCGTGCTTCGACCAACCGCTGGCGCCGCTGCCGCCAGCGCTGGTC
GAGCTGCACGTAGGCGACGCGTTCAGCACGGCACTAGGACCGCTGCCGGC
CGGCCTAGCGCACCTGACCCTTGGTAATGCGTTCAGTCGCGCCCTGGGCC
CTCTGCCCGCAGGCCTCAGGAGCCTGAGCCTTGGTAATGCGTTCGATCGC
GCCCTGGGCCCTCTGCCCGCAGGCCTCGGGAGCCTGAGCCTCGGTGATGC
ATTCGATCGTGCCCTGGGCCCTCTGCCGGTAGGCCTCGCAAGCGTGGAGC
TCGGGCTCGCTTTCAGCCAGCCACTCGGGCATGTGCCCAGGCTGTGTTAT
GTGAGAAGGAGGCACTGCGCTTGGGCAGTGGCAACTTGA
back to top

protein sequence of jgi.p|Trimin1|170320

>Trimin1|170320|e_gw1.71.54.1 ID=Trimin1|170320|e_gw1.71.54.1|Name=jgi.p|Trimin1|170320|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp
MLHLFLEQKRQVDSGDFNKPLGALPASLTYIKVVGCYFDQALGPLPPALV
HLAVDSAFTRALGPLPPMLRTLSLGRLLDHSLGVLPTALMHLKLGAAFNQ
PLGALPPKLTVLSLGKDFNRPLRPLPPSLAELRIGACFDQPLAPLPPALV
ELHVGDAFSTALGPLPAGLAHLTLGNAFSRALGPLPAGLRSLSLGNAFDR
ALGPLPAGLGSLSLGDAFDRALGPLPVGLASVELGLAFSQPLGHVPRLCY
VRRRHCAWAVAT*
back to top

mRNA from alignment at Contig_71:446376..447164-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12414 ID=mRNA_12414|Name=jgi.p|Trimin1|170320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_71:446376..447164- (Tribonema minus UTEX_B_3156 )
ATGTTGCATCTGTTTCTCGAACAGAAACGTCAAGTGGACAGCGGAGACTT
CAACAAGCCCCTGGGCGCTCTGCCCGCATCGCTCACCTACATCAAGGTTG
TTGGGTGTTATTTCGACCAGGCGTTGGGTCCGCTGCCGCCGGCGCTGGTT
CACCTTGCTGTTGATAGCGCTTTCACCCGGGCGCTGGGGCCGCTGCCGCC
GATGCTGCGCACGCTGTCGCTGGGAAGATTGCTCGATCACTCCCTTGGCG
TGCTGCCGACGGCGCTGATGCACTTGAAGCTGGGCGCAGCCTTCAACCAG
CCTCTAGGCGCGCTGCCGCCCAAGCTGACCGTGCTCAGCCTGGGCAAGGA
CTTCAATCGCCCACTGCGGCCGCTGCCGCCGTCGCTGGCGGAGCTGAGGA
TCGGCGCGTGCTTCGACCAACCGCTGGCGCCGCTGCCGCCAGCGCTGGTC
GAGCTGCACGTAGGCGACGCGTTCAGCACGGCACTAGGACCGCTGCCGGC
CGGCCTAGCGCACCTGACCCTTGGTAATGCGTTCAGTCGCGCCCTGGGCC
CTCTGCCCGCAGGCCTCAGGAGCCTGAGCCTTGGTAATGCGTTCGATCGC
GCCCTGGGCCCTCTGCCCGCAGGCCTCGGGAGCCTGAGCCTCGGTGATGC
ATTCGATCGTGCCCTGGGCCCTCTGCCGGTAGGCCTCGCAAGCGTGGAGC
TCGGGCTCGCTTTCAGCCAGCCACTCGGGCATGTGCCCAGGCTGTGTTAT
GTGAGAAGGAGGCACTGCGCTTGGGCAGTGGCAACTTGA
back to top

Coding sequence (CDS) from alignment at Contig_71:446376..447164-

>mRNA_12414 ID=mRNA_12414|Name=jgi.p|Trimin1|170320|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_71:446376..447164- (Tribonema minus UTEX_B_3156 )
ATGTTGCATCTGTTTCTCGAACAGAAACGTCAAGTGGACAGCGGAGACTT
CAACAAGCCCCTGGGCGCTCTGCCCGCATCGCTCACCTACATCAAGGTTG
TTGGGTGTTATTTCGACCAGGCGTTGGGTCCGCTGCCGCCGGCGCTGGTT
CACCTTGCTGTTGATAGCGCTTTCACCCGGGCGCTGGGGCCGCTGCCGCC
GATGCTGCGCACGCTGTCGCTGGGAAGATTGCTCGATCACTCCCTTGGCG
TGCTGCCGACGGCGCTGATGCACTTGAAGCTGGGCGCAGCCTTCAACCAG
CCTCTAGGCGCGCTGCCGCCCAAGCTGACCGTGCTCAGCCTGGGCAAGGA
CTTCAATCGCCCACTGCGGCCGCTGCCGCCGTCGCTGGCGGAGCTGAGGA
TCGGCGCGTGCTTCGACCAACCGCTGGCGCCGCTGCCGCCAGCGCTGGTC
GAGCTGCACGTAGGCGACGCGTTCAGCACGGCACTAGGACCGCTGCCGGC
CGGCCTAGCGCACCTGACCCTTGGTAATGCGTTCAGTCGCGCCCTGGGCC
CTCTGCCCGCAGGCCTCAGGAGCCTGAGCCTTGGTAATGCGTTCGATCGC
GCCCTGGGCCCTCTGCCCGCAGGCCTCGGGAGCCTGAGCCTCGGTGATGC
ATTCGATCGTGCCCTGGGCCCTCTGCCGGTAGGCCTCGCAAGCGTGGAGC
TCGGGCTCGCTTTCAGCCAGCCACTCGGGCATGTGCCCAGGCTGTGTTAT
GTGAGAAGGAGGCACTGCGCTTGGGCAGTGGCAACTTGA
back to top