mRNA_12411 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835YKM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM9_9STRA) HSP 1 Score: 417 bits (1071), Expect = 1.440e-147 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1
Query: 1 MQKHYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIVQVR 606
MQKHYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIVQVR
Sbjct: 1 MQKHYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIVQVR 202
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835Z3M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M2_9STRA) HSP 1 Score: 264 bits (675), Expect = 2.950e-84 Identity = 123/196 (62.76%), Postives = 146/196 (74.49%), Query Frame = 1
Query: 10 HYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIV 597
HY WHT EG + KIRKQDR+R+VLE Y VDSECH+RY+GGCVPDPDKFC+R+D+HV+GITNAIVIVECDE H DY L CELSRMEQ HE +IK F+ + A GEA A+ ++PVVFVR+NPD VDG E R +EA ++ VL DI G L LPHPLNLVY+ YS +PVV DPDF+PQMR C+V
Sbjct: 221 HYDCWHTVEGQQKKIRKQDRVRQVLESAYTVDSECHVRYQGGCVPDPDKFCARIDYHVLGITNAIVIVECDEQGHKDYTLTCELSRMEQIHEAIIKANFSMVVAKAGEAYALTASMKPVVFVRFNPDPWKVDGEKELSRRCDREAVLLEVLQDISDGTLELPHPLNLVYIGYSMLDGEPVVCGDPDFAPQMRGCVV 416
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835YUI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI0_9STRA) HSP 1 Score: 247 bits (631), Expect = 9.850e-81 Identity = 115/186 (61.83%), Postives = 139/186 (74.73%), Query Frame = 1
Query: 40 MESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIV 597
M+ KIRKQDR+R++LE YAVDSECHIRY+GGCVPDPDKF +RLD HV+GI A+V+VECDE H DY++ CE SRMEQ HE ++K QF + A GEA A+A PLRPVVFVRYNPD R VDGV E+ R KEA + VL DI+ G L LPH LN+VY+ Y +P+V D D+SPQMR C+V
Sbjct: 1 MQKKIRKQDRVRQLLEAVYAVDSECHIRYEGGCVPDPDKFFARLDMHVIGIVRAVVVVECDEFGHVDYMVSCEQSRMEQVHEAILKAQFVDAVAELGEAAALAAPLRPVVFVRYNPDAREVDGVAERVRRMDKEAQLKKVLRDIDRGTLELPHTLNIVYIGYDMLDGEPMVCQDTDYSPQMRGCVV 186
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A836CH89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH89_9STRA) HSP 1 Score: 256 bits (655), Expect = 5.900e-80 Identity = 116/192 (60.42%), Postives = 146/192 (76.04%), Query Frame = 1
Query: 22 WHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIV 597
WHTKEG + KIRKQDR+R+++E YAVDSECH+RY+GGCVPDPDKFC+ +D+HV+GITNAI+IVECDE H DYVL CELSRMEQ HE ++K F+ M A +GE A+ T ++PVVFVR+NPD R VDG E R +EA ++ VL DI G++ L HPLN+VY+ Y +PVV PDF+PQMR C+V
Sbjct: 336 WHTKEGQQKKIRKQDRVRQIMEKIYAVDSECHVRYQGGCVPDPDKFCACVDYHVLGITNAIIIVECDEEGHKDYVLACELSRMEQVHEAIVKANFSMMVAREGEEYALTTLMKPVVFVRFNPDPRKVDGKKEITRRCDREAILLQVLQDISDGIVELSHPLNIVYIGYDMLEGEPVVCGGPDFAPQMRGCVV 527
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835Z3P9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P9_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.530e-76 Identity = 113/188 (60.11%), Postives = 135/188 (71.81%), Query Frame = 1
Query: 40 MESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACIVQV 603
M+ KIRKQDR+R+VLE YAVD+ECHIRY GCVPDPDKF +RLD HV+GI A+V+VECDE H DY++ CE +RMEQ HE V+K QFA+ A GE A+A PLRPVVFVRYNPD R VDGV E+ R KEA +M L DI+ G L L H LN++Y+ Y +P V D D+SPQMR IV V
Sbjct: 1 MQRKIRKQDRVRRVLEAVYAVDNECHIRYADGCVPDPDKFFARLDMHVIGIVRAVVVVECDEFGHADYMVSCEQTRMEQVHEAVLKAQFADAVADLGETAALAAPLRPVVFVRYNPDAREVDGVKERVRRMDKEAQLMKALRDIDDGSLQLSHSLNIIYIGYDMLEGEPAVCRDTDYSPQMRGSIVLV 188
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A836CBY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY6_9STRA) HSP 1 Score: 254 bits (649), Expect = 8.500e-75 Identity = 118/175 (67.43%), Postives = 141/175 (80.57%), Query Frame = 1
Query: 1 MQKHYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNY 525
MQ HYQRWHTKEGM+ K+RKQDR+R+VLE YAVDSECHIRY GGCVPDPDKF +RLDFHVVGIT A V+VECDEN H+DY L CELSRMEQ HE V+K + ++ A GE TAM L+P+VFVR+NPD RMV+GV +K R +EA ++ VL+DI+ G LALPHPLN+VY+ Y
Sbjct: 1 MQAHYQRWHTKEGMQRKVRKQDRVRRVLESVYAVDSECHIRYIGGCVPDPDKFYARLDFHVVGITTANVMVECDENGHSDYTLLCELSRMEQVHEAVLKAAYQDLVAAMGEKTAMKAALKPIVFVRFNPDARMVNGVKDKVKRREREAALLQVLADIQEGRLALPHPLNIVYIGY 175
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835ZGJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ8_9STRA) HSP 1 Score: 224 bits (572), Expect = 2.320e-68 Identity = 105/191 (54.97%), Postives = 133/191 (69.63%), Query Frame = 1
Query: 22 WHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACI 594
WHTKEGM KIRKQDRLR+VLE YAV++ECH+RY GGCVPDPDK +R+DFH++GIT +VIVECDE H DY+LRCEL+RMEQ HE ++K + GE A+ PV+FVR+NPD VDGV K ++ KE +M L+++ G A LN+VY+ YS+ PVV DPD+S QMRAC+
Sbjct: 262 WHTKEGMAKKIRKQDRLRQVLEAVYAVNTECHVRYIGGCVPDPDKHYARIDFHILGITQVVVIVECDEGGHKDYLLRCELTRMEQVHEAILKAHTQATRKALGEVQALRIAAPPVLFVRFNPDNCAVDGVRVKATQKEKEGVLMRFLAEVACGTRAFDETLNIVYIGYSSEGGVPVVCNDPDYSAQMRACV 452
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835YYJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ7_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.300e-62 Identity = 100/195 (51.28%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 10 HYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACI 594
H Q WHTKEG KI KQDR+R++LE YAVDSECHI+Y+ GCVPDPDK +R+DFH+VGIT+ IVIVECDE H DY+L CELSRMEQ HE ++K A PV+FVRYNPD R +DG + R KE+++M+ LSD+ G + LN+ Y+ Y P V DPDF QM+ C+
Sbjct: 209 HIQCWHTKEGKAKKITKQDRVRQILEEVYAVDSECHIKYRNGCVPDPDKHYARIDFHIVGITHTIVIVECDEGGHADYMLTCELSRMEQIHEAILK--------------ACPDGAPPVLFVRYNPDMRTIDGTPQATKRREKESELMTFLSDVAEGNVVFTETLNIAYLGYDMEGCVPCVCNDPDFPEQMKGCV 389
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835Z5S0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5S0_9STRA) HSP 1 Score: 197 bits (502), Expect = 4.420e-61 Identity = 95/185 (51.35%), Postives = 123/185 (66.49%), Query Frame = 1
Query: 40 MESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHKPVVSYDPDFSPQMRACI 594
M KI+KQDRLR+VLE Y VD ECHIRY+GGCVP+ DK +R+DFHVVGI + IVI+ECDE H DY++RCEL+RMEQ HEGV+K + GE A+ P PV+FVR+NPD VDG + R +EA +M L+++ G LN+VY+ Y +P V DPD+S QM+AC+
Sbjct: 1 MAKKIKKQDRLRQVLEAVYTVDRECHIRYEGGCVPNADKHHARVDFHVVGIVHLIVIIECDEGGHVDYLVRCELTRMEQVHEGVLKAHAQIAADMAGETEALQIPCPPVLFVRFNPDNCTVDGAKVQNRRKDREAALMRFLNEVALGQRVFTETLNIVYIGYDMEGGEPSVCKDPDYSEQMKACV 185
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Match: A0A835YNI2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI2_9STRA) HSP 1 Score: 187 bits (474), Expect = 7.990e-58 Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 1
Query: 151 DKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRMVDGVGEKRSRASKEADMMSVLSDI 471
DKFCSR FHVVG+TNA+VIVECDE+EHNDYVLRCELSRMEQAHEGV+KGQ+A +KAVKGEATA+ATP RPVVFVRYNPD R VDGV EKRSRA+KE DMMS+LSDI
Sbjct: 6 DKFCSRFKFHVVGMTNAVVIVECDESEHNDYVLRCELSRMEQAHEGVLKGQYAYVKAVKGEATALATPFRPVVFVRYNPDSRKVDGVLEKRSRAAKEKDMMSMLSDI 112 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350765 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12411 ID=mRNA_12411|Name=jgi.p|Trimin1|350765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_71:421062..421670+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGAAGCACTACCAGCGCTGGCACACCAAGGAGGGGATGGAAAGCAAback to top protein sequence of jgi.p|Trimin1|350765 >Trimin1|350765|estExt_Genemark1.C_Ctg_710046 ID=Trimin1|350765|estExt_Genemark1.C_Ctg_710046|Name=jgi.p|Trimin1|350765|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp MQKHYQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPback to top mRNA from alignment at Contig_71:421062..421670+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12411 ID=mRNA_12411|Name=jgi.p|Trimin1|350765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_71:421062..421670+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_71:421062..421670+ >mRNA_12411 ID=mRNA_12411|Name=jgi.p|Trimin1|350765|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_71:421062..421670+ (Tribonema minus UTEX_B_3156 )back to top |