mRNA_12381 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128875
Unique NamemRNA_12381
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128875 vs. uniprot
Match: A0A835YV90_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV90_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.840e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 RNTGLEMAIIDETLKELPEFYGIFTSAQSLIFYRCKALQ 117
            RNTGLEMAIIDETLKELPEFYGIFTSAQSLIFYRCKALQ
Sbjct:    1 RNTGLEMAIIDETLKELPEFYGIFTSAQSLIFYRCKALQ 39
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BLAST of jgi.p|Trimin1|128875 vs. uniprot
Match: A0A835Z6I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.640e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 RNTGLEMAIIDETLKELPEFYGIFTSAQSLIFYRCKALQ 117
            RN GLE+AI D TLKELPEFYGIFTSA+SL    C+ALQ
Sbjct:    4 RNRGLELAISDATLKELPEFYGIFTSARSLSVAGCEALQ 42
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128875 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YV90_9STRA1.840e-18100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6I8_9STRA2.640e-874.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:184019..184267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128875|gw1.71.1.1
Hectar predicted targeting categoryother localisation
TranscriptId129197
TrackFilteredModels1
ProteinId128875
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128875gene_12381Tribonema minus UTEX_B_3156 geneContig_71 184019..184267 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12381_1exon_12381_1Tribonema minus UTEX_B_3156 exonContig_71 184019..184267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12381CDS_12381Tribonema minus UTEX_B_3156 CDSContig_71 184019..184267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128875Trimin1|128875|gw1.71.1.1Tribonema minus UTEX_B_3156 polypeptideContig_71 184019..184267 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12381 ID=mRNA_12381|Name=jgi.p|Trimin1|128875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_71:184019..184267+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAAATACAGGACTGGAGATGGCTATCATAGATGAAACTCTTAAAGAACT
TCCTGAGTTCTATGGCATCTTCACATCTGCACAGAGCCTCATTTTCTATA
GATGCAAGGCGCTCCAGAGCGTGCCCGAATCGATCGGCAACCTCACCGGC
CTCACAAGGCTTAGTTTCAATGGGTGCAATGCGGTCCAGAGCGTACCAGA
GTCCATTGGCCAGCTCACCGGCCTCAAAAGCCTTGATTTGAGGCGATGC
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protein sequence of jgi.p|Trimin1|128875

>Trimin1|128875|gw1.71.1.1 ID=Trimin1|128875|gw1.71.1.1|Name=jgi.p|Trimin1|128875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
RNTGLEMAIIDETLKELPEFYGIFTSAQSLIFYRCKALQSVPESIGNLTG
LTRLSFNGCNAVQSVPESIGQLTGLKSLDLRRC
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mRNA from alignment at Contig_71:184019..184267+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12381 ID=mRNA_12381|Name=jgi.p|Trimin1|128875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_71:184019..184267+ (Tribonema minus UTEX_B_3156 )
AGAAATACAGGACTGGAGATGGCTATCATAGATGAAACTCTTAAAGAACT
TCCTGAGTTCTATGGCATCTTCACATCTGCACAGAGCCTCATTTTCTATA
GATGCAAGGCGCTCCAGAGCGTGCCCGAATCGATCGGCAACCTCACCGGC
CTCACAAGGCTTAGTTTCAATGGGTGCAATGCGGTCCAGAGCGTACCAGA
GTCCATTGGCCAGCTCACCGGCCTCAAAAGCCTTGATTTGAGGCGATGC
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Coding sequence (CDS) from alignment at Contig_71:184019..184267+

>mRNA_12381 ID=mRNA_12381|Name=jgi.p|Trimin1|128875|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_71:184019..184267+ (Tribonema minus UTEX_B_3156 )
AGAAATACAGGACTGGAGATGGCTATCATAGATGAAACTCTTAAAGAACT
TCCTGAGTTCTATGGCATCTTCACATCTGCACAGAGCCTCATTTTCTATA
GATGCAAGGCGCTCCAGAGCGTGCCCGAATCGATCGGCAACCTCACCGGC
CTCACAAGGCTTAGTTTCAATGGGTGCAATGCGGTCCAGAGCGTACCAGA
GTCCATTGGCCAGCTCACCGGCCTCAAAAGCCTTGATTTGAGGCGATGC
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