mRNA_12378 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170291
Unique NamemRNA_12378
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170291 vs. uniprot
Match: A0A835Z9I8_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 7.650e-43
Identity = 131/209 (62.68%), Postives = 132/209 (63.16%), Query Frame = 1 
Query:    1 TALHHAIARDDQEAAETLLANDAFARATTNYGITPLHLAAMRGCADLVTRLAFQGGFIDARDSSGDTPLHYAIRNMDAIMTVTVKLIAGSASVDVXXXXXXXXXXXXXXXGSPVMNAVVIGTSRHVDKTDHLCNNALHVAARYQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTAXXXXXXXXXXXXXSFE 627
            TALHHAIARD+QEAAETLLANDA ARATTNYGI PLHLAAMRG ADLVTRLAFQ                                         XXXXXXXXXXXXXXX                                YQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTA XXXXXXXXXXXXSFE
Sbjct:   21 TALHHAIARDNQEAAETLLANDASARATTNYGIAPLHLAAMRGSADLVTRLAFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--YQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTADXXXXXXXXXXXXSFE 227
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BLAST of jgi.p|Trimin1|170291 vs. uniprot
Match: A0A835Z4V3_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.790e-7
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 TALHHAIARDDQEAAETLLANDAFARATTNYGI 99
            TALHHAIARDDQEAAETLLAN+A ARA TNYGI
Sbjct:    7 TALHHAIARDDQEAAETLLANEASARAATNYGI 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170291 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z9I8_9STRA7.650e-4362.68Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
A0A835Z4V3_9STRA1.790e-790.91Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:175859..176488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170291|e_gw1.71.44.1
BRITEko00000
KEGG koko:K06867
Preferred nameplaS
Descriptionresponse to abiotic stimulus
COG categoryG
Max annot lvl2|Bacteria
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria
Evalue4.94e-07
Seed ortholog269482.Bcep1808_2154
Hectar predicted targeting categoryother localisation
TranscriptId170613
TrackFilteredModels1
ProteinId170291
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170291gene_12378Tribonema minus UTEX_B_3156 geneContig_71 175859..176488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12378_1exon_12378_1Tribonema minus UTEX_B_3156 exonContig_71 175859..176488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12378CDS_12378Tribonema minus UTEX_B_3156 CDSContig_71 175859..176488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170291Trimin1|170291|e_gw1.71.44.1Tribonema minus UTEX_B_3156 polypeptideContig_71 175859..176488 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12378 ID=mRNA_12378|Name=jgi.p|Trimin1|170291|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=630bp|location=Sequence derived from alignment at Contig_71:175859..176488- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCGCCCTTCATCACGCCATCGCGCGCGATGACCAAGAAGCGGCTGAGAC
GTTGCTCGCCAACGATGCGTTTGCGCGAGCGACGACCAACTACGGAATCA
CGCCGCTTCATTTAGCGGCCATGCGCGGATGCGCTGACCTGGTGACAAGA
CTCGCGTTTCAAGGGGGTTTCATCGATGCCAGAGACTCATCCGGCGACAC
ACCTCTGCACTACGCGATCCGGAACATGGACGCCATCATGACCGTCACGG
TCAAGCTCATCGCTGGATCTGCGTCCGTCGACGTCCCTAACCTGAATGGC
GAGACGCCACTACATGTGACTGCGCGCCACGGTTCGCCCGTCATGAATGC
CGTAGTCATCGGAACGTCACGTCACGTCGACAAGACCGACCACCTATGTA
ATAATGCCCTGCACGTCGCAGCGCGGTACCAGAACGTAGACTTTGCACGT
CGCATCATCGAACGGGCTACGTCCATGATACGGTTCGCAAGGAACTTGGA
GGGAAGATCGCCCTCGGATATCGCTTTCGCTTCCAGTAACGTGCTCATGC
ACAACGTGTTCTCCGCTGCACAGACAGCGGACACGATGGACGACACCGAT
GACGAGGATGATGAGGACAGCTTCGAATGA
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protein sequence of jgi.p|Trimin1|170291

>Trimin1|170291|e_gw1.71.44.1 ID=Trimin1|170291|e_gw1.71.44.1|Name=jgi.p|Trimin1|170291|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=210bp
TALHHAIARDDQEAAETLLANDAFARATTNYGITPLHLAAMRGCADLVTR
LAFQGGFIDARDSSGDTPLHYAIRNMDAIMTVTVKLIAGSASVDVPNLNG
ETPLHVTARHGSPVMNAVVIGTSRHVDKTDHLCNNALHVAARYQNVDFAR
RIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTADTMDDTD
DEDDEDSFE*
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mRNA from alignment at Contig_71:175859..176488-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12378 ID=mRNA_12378|Name=jgi.p|Trimin1|170291|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=630bp|location=Sequence derived from alignment at Contig_71:175859..176488- (Tribonema minus UTEX_B_3156 )
ACCGCCCTTCATCACGCCATCGCGCGCGATGACCAAGAAGCGGCTGAGAC
GTTGCTCGCCAACGATGCGTTTGCGCGAGCGACGACCAACTACGGAATCA
CGCCGCTTCATTTAGCGGCCATGCGCGGATGCGCTGACCTGGTGACAAGA
CTCGCGTTTCAAGGGGGTTTCATCGATGCCAGAGACTCATCCGGCGACAC
ACCTCTGCACTACGCGATCCGGAACATGGACGCCATCATGACCGTCACGG
TCAAGCTCATCGCTGGATCTGCGTCCGTCGACGTCCCTAACCTGAATGGC
GAGACGCCACTACATGTGACTGCGCGCCACGGTTCGCCCGTCATGAATGC
CGTAGTCATCGGAACGTCACGTCACGTCGACAAGACCGACCACCTATGTA
ATAATGCCCTGCACGTCGCAGCGCGGTACCAGAACGTAGACTTTGCACGT
CGCATCATCGAACGGGCTACGTCCATGATACGGTTCGCAAGGAACTTGGA
GGGAAGATCGCCCTCGGATATCGCTTTCGCTTCCAGTAACGTGCTCATGC
ACAACGTGTTCTCCGCTGCACAGACAGCGGACACGATGGACGACACCGAT
GACGAGGATGATGAGGACAGCTTCGAATGA
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Coding sequence (CDS) from alignment at Contig_71:175859..176488-

>mRNA_12378 ID=mRNA_12378|Name=jgi.p|Trimin1|170291|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=630bp|location=Sequence derived from alignment at Contig_71:175859..176488- (Tribonema minus UTEX_B_3156 )
ACCGCCCTTCATCACGCCATCGCGCGCGATGACCAAGAAGCGGCTGAGAC
GTTGCTCGCCAACGATGCGTTTGCGCGAGCGACGACCAACTACGGAATCA
CGCCGCTTCATTTAGCGGCCATGCGCGGATGCGCTGACCTGGTGACAAGA
CTCGCGTTTCAAGGGGGTTTCATCGATGCCAGAGACTCATCCGGCGACAC
ACCTCTGCACTACGCGATCCGGAACATGGACGCCATCATGACCGTCACGG
TCAAGCTCATCGCTGGATCTGCGTCCGTCGACGTCCCTAACCTGAATGGC
GAGACGCCACTACATGTGACTGCGCGCCACGGTTCGCCCGTCATGAATGC
CGTAGTCATCGGAACGTCACGTCACGTCGACAAGACCGACCACCTATGTA
ATAATGCCCTGCACGTCGCAGCGCGGTACCAGAACGTAGACTTTGCACGT
CGCATCATCGAACGGGCTACGTCCATGATACGGTTCGCAAGGAACTTGGA
GGGAAGATCGCCCTCGGATATCGCTTTCGCTTCCAGTAACGTGCTCATGC
ACAACGTGTTCTCCGCTGCACAGACAGCGGACACGATGGACGACACCGAT
GACGAGGATGATGAGGACAGCTTCGAATGA
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