mRNA_12369 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170345
Unique NamemRNA_12369
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A835YM11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM11_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 7.710e-140
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 
Query:    1 MQDWSDHVEALVKAGHVGAAISVVSTSIERGGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGTSPACWGLMPFSPTAAR 588
            MQDWSDHVEALVKAGHVGAAISVVSTSIERGGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGTSPACWGLMPFSPTAAR
Sbjct:    1 MQDWSDHVEALVKAGHVGAAISVVSTSIERGGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGTSPACWGLMPFSPTAAR 196
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A835YPB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.270e-58
Identity = 106/180 (58.89%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:    1 MQDWSDHVEALVKAGHVGAAISVVSTSIERGGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            +QDWSD V+ALVK G+V  A+S +S  +ERG HQP++  F+ +L  L  +R    +  V ALMRQ  TP DT AY++AL ACGG+HAMQHADQ+LREMK AGVAA+  TF+AA  AC  S+ WQRALD FAE+EA+YPHLVTV  WN++L VL+  G+PE AI K AEM  R LKLN+ T
Sbjct:   58 VQDWSDRVQALVKTGNVHRAVSYLSGLVERG-HQPNINAFHFVLEPLSRKRILSTSLIVVALMRQCGTPLDTKAYHYALGACGGQHAMQHADQLLREMKAAGVAADQHTFAAAAHACIVSKKWQRALDLFAEIEADYPHLVTVGMWNRLLRVLIRTGQPEQAIAKGAEMVERGLKLNSET 236
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A835Z2X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.360e-40
Identity = 75/150 (50.00%), Postives = 102/150 (68.00%), Query Frame = 1 
Query:   94 GHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGG-KHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            GH+P +++F+++L  L   +  PAA +V +L+R+S TPPD+ AY +ALRACGG   + Q  +Q+L+EM +AG+  +  TF AA     HSR WQRALD FAE EA +PHL+TV  WN++L VLV   +PE A+ K AEM  R L LNA T
Sbjct:    6 GHRPDIRVFHIVLEALSAAKAMPAALNVMSLLRRSGTPPDSRAYTYALRACGGGAQSAQKVNQLLQEMADAGLTHDEDTFGAALLTFGHSRSWQRALDLFAETEATHPHLLTVDAWNRLLAVLVYSNEPERAVAKAAEMVERGLDLNADT 155
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A836CAH1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH1_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.890e-35
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 1 
Query:   91 GGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            GGH+P + LF+L+L  L  +R+   A  V ALM+QS T PD  AYN ALRA  G   +Q AD +L+EM EAGVA + GT++A  +AC  SRD  RAL+ F +MEA+ P  V V TWN +L  ++  G P+ A+ K A+MA R L  +A T
Sbjct:    4 GGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNG---LQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFT 150
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A835YTU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.350e-29
Identity = 67/156 (42.95%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:   76 TSIERGGHQPSLQLFYLILGVLVERRNRPA-AASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            T + +  HQP L LF+L+L  L +  +  + A  V  LMRQ    PDT A N A+RACGG HA++HAD+V                           DWQRAL+ FA+ME NYP LVTV  WN+VLGVLV+  +P+ A  K A MA+R +  +A T
Sbjct:   13 TFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVT 168
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A836C956_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C956_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.950e-28
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:  262 MQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            MQ AD++ REMKE G++A+  TF+AAF+AC+ S+DWQRAL+ F EMEA +P LVTV  WN++L VL+ GGKPEL + KVAEMA   LKLN  T
Sbjct:    1 MQSADKLQREMKEVGLSADAHTFTAAFKACYASKDWQRALNIFLEMEAQHPKLVTVSMWNELLAVLLNGGKPELLVAKVAEMAKCGLKLNTLT 93
[Close]
BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A836C9W1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.940e-21
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:  181 ALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANR 516
            ALMRQS T PD  AYN ALRA   +  +Q AD +L+EM +AGVA + GT+ A  +AC  SRD  RAL+ FA+MEA     V V  WN +L  ++  G P+ A+ K  EM  R
Sbjct:  134 ALMRQSGTKPDVTAYNLALRA---QTRLQSADWLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVNVHMWNMLLRAIIASGDPQSALQKATEMTQR 242
[Close]
BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A836CEM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.670e-18
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:  292 MKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            M EAGVAA+  TF AA  AC HSRDWQRAL+ FA+MEA++P LV+V  WN++L VLV   +P+ A  K A MA R +  +A T
Sbjct:    1 MAEAGVAADKHTFGAALNACCHSRDWQRALELFADMEAHHPDLVSVHLWNRLLSVLVFTNQPQAAAAKAAAMAERGVPYDAVT 83
[Close]
BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A835YU84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU84_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.590e-18
Identity = 45/78 (57.69%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:  175 VRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEAN 408
            V  LMRQ    PDT A NFALRAC G HAMQHAD+VLR M EAG+AA+  T             WQRAL+ FA+MEAN
Sbjct:    1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
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BLAST of jgi.p|Trimin1|170345 vs. uniprot
Match: A0A835Z7A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.490e-11
Identity = 51/174 (29.31%), Postives = 70/174 (40.23%), Query Frame = 1 
Query:   19 HVEALVKAGHVGAAISVVSTSIERGGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 540
            H+ ALV  G V AA+S +   +++G HQP +++F+L+L  L   R+ P                                                                       ALD FAE+ A +P L+TV  WN++L VL+  GKPE A+ K AEMA R L LNA T
Sbjct:  131 HIRALVAEGRVQAAVSALHKIVQQG-HQPDIEVFHLVLEALSTTRSMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALDLFAEVGAAHPRLLTVHAWNRLLAVLIDSGKPECAVAKAAEMAERGLTLNADT 303
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170345 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YM11_9STRA7.710e-140100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPB5_9STRA2.270e-5858.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2X8_9STRA2.360e-4050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAH1_9STRA1.890e-3548.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835YTU6_9STRA1.350e-2942.95Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C956_9STRA1.950e-2861.29Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C9W1_9STRA7.940e-2148.21PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM6_9STRA3.670e-1855.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU84_9STRA5.590e-1857.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7A9_9STRA1.490e-1129.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:77567..78157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170345|e_gw1.71.36.1
Hectar predicted targeting categoryother localisation
TranscriptId170667
TrackFilteredModels1
ProteinId170345
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170345gene_12369Tribonema minus UTEX_B_3156 geneContig_71 77567..78157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12369_1exon_12369_1Tribonema minus UTEX_B_3156 exonContig_71 77567..78157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12369CDS_12369Tribonema minus UTEX_B_3156 CDSContig_71 77567..78157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170345Trimin1|170345|e_gw1.71.36.1Tribonema minus UTEX_B_3156 polypeptideContig_71 77567..78157 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12369 ID=mRNA_12369|Name=jgi.p|Trimin1|170345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_71:77567..78157- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGACTGGAGTGACCATGTGGAAGCCCTGGTCAAGGCCGGCCATGT
TGGTGCCGCCATATCTGTTGTCAGCACATCCATTGAGCGAGGCGGGCACC
AGCCCAGCTTGCAACTTTTCTATCTCATTCTAGGCGTTTTGGTCGAAAGA
AGAAATAGGCCAGCTGCAGCAAGTGTGCGAGCACTCATGAGGCAGAGCAG
TACGCCCCCAGACACACCTGCATACAACTTTGCGCTCCGTGCGTGCGGTG
GTAAGCATGCCATGCAGCACGCTGACCAGGTGCTGCGCGAAATGAAGGAG
GCAGGCGTGGCTGCCAATATAGGCACATTTTCAGCAGCTTTTCAAGCTTG
CTGGCACTCACGAGACTGGCAGCGCGCGCTTGACCGCTTCGCTGAGATGG
AGGCCAACTACCCCCATCTGGTCACCGTGCAAACATGGAACCAAGTGCTT
GGCGTGCTTGTTGTCGGGGGCAAGCCAGAGCTAGCAATAACAAAGGTTGC
GGAAATGGCGAACCGCAAGCTCAAGCTCAATGCAGGGACTTCTCCAGCCT
GCTGGGGGCTCATGCCGTTCTCGCCGACCGCAGCAAGATAG
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protein sequence of jgi.p|Trimin1|170345

>Trimin1|170345|e_gw1.71.36.1 ID=Trimin1|170345|e_gw1.71.36.1|Name=jgi.p|Trimin1|170345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=197bp
MQDWSDHVEALVKAGHVGAAISVVSTSIERGGHQPSLQLFYLILGVLVER
RNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKE
AGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVL
GVLVVGGKPELAITKVAEMANRKLKLNAGTSPACWGLMPFSPTAAR*
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mRNA from alignment at Contig_71:77567..78157-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12369 ID=mRNA_12369|Name=jgi.p|Trimin1|170345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_71:77567..78157- (Tribonema minus UTEX_B_3156 )
ATGCAAGACTGGAGTGACCATGTGGAAGCCCTGGTCAAGGCCGGCCATGT
TGGTGCCGCCATATCTGTTGTCAGCACATCCATTGAGCGAGGCGGGCACC
AGCCCAGCTTGCAACTTTTCTATCTCATTCTAGGCGTTTTGGTCGAAAGA
AGAAATAGGCCAGCTGCAGCAAGTGTGCGAGCACTCATGAGGCAGAGCAG
TACGCCCCCAGACACACCTGCATACAACTTTGCGCTCCGTGCGTGCGGTG
GTAAGCATGCCATGCAGCACGCTGACCAGGTGCTGCGCGAAATGAAGGAG
GCAGGCGTGGCTGCCAATATAGGCACATTTTCAGCAGCTTTTCAAGCTTG
CTGGCACTCACGAGACTGGCAGCGCGCGCTTGACCGCTTCGCTGAGATGG
AGGCCAACTACCCCCATCTGGTCACCGTGCAAACATGGAACCAAGTGCTT
GGCGTGCTTGTTGTCGGGGGCAAGCCAGAGCTAGCAATAACAAAGGTTGC
GGAAATGGCGAACCGCAAGCTCAAGCTCAATGCAGGGACTTCTCCAGCCT
GCTGGGGGCTCATGCCGTTCTCGCCGACCGCAGCAAGATAG
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Coding sequence (CDS) from alignment at Contig_71:77567..78157-

>mRNA_12369 ID=mRNA_12369|Name=jgi.p|Trimin1|170345|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=591bp|location=Sequence derived from alignment at Contig_71:77567..78157- (Tribonema minus UTEX_B_3156 )
ATGCAAGACTGGAGTGACCATGTGGAAGCCCTGGTCAAGGCCGGCCATGT
TGGTGCCGCCATATCTGTTGTCAGCACATCCATTGAGCGAGGCGGGCACC
AGCCCAGCTTGCAACTTTTCTATCTCATTCTAGGCGTTTTGGTCGAAAGA
AGAAATAGGCCAGCTGCAGCAAGTGTGCGAGCACTCATGAGGCAGAGCAG
TACGCCCCCAGACACACCTGCATACAACTTTGCGCTCCGTGCGTGCGGTG
GTAAGCATGCCATGCAGCACGCTGACCAGGTGCTGCGCGAAATGAAGGAG
GCAGGCGTGGCTGCCAATATAGGCACATTTTCAGCAGCTTTTCAAGCTTG
CTGGCACTCACGAGACTGGCAGCGCGCGCTTGACCGCTTCGCTGAGATGG
AGGCCAACTACCCCCATCTGGTCACCGTGCAAACATGGAACCAAGTGCTT
GGCGTGCTTGTTGTCGGGGGCAAGCCAGAGCTAGCAATAACAAAGGTTGC
GGAAATGGCGAACCGCAAGCTCAAGCTCAATGCAGGGACTTCTCCAGCCT
GCTGGGGGCTCATGCCGTTCTCGCCGACCGCAGCAAGATAG
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