mRNA_12357 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176230
Unique NamemRNA_12357
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A835ZBK3_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBK3_9STRA)

HSP 1 Score: 927 bits (2397), Expect = 0.000e+0
Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 1
Query:    1 MPASGGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            MPASGGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN
Sbjct:    1 MPASGGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 463          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A835Z4S3_9STRA (Large eukaryotic DNA virus major capsid protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S3_9STRA)

HSP 1 Score: 684 bits (1766), Expect = 1.010e-242
Identity = 342/463 (73.87%), Postives = 387/463 (83.59%), Query Frame = 1
Query:    1 MPASGGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            M ASGGVIQIAARG+QDA++NDSPTHTIWR+VHTRFTSCAMDDE Q+LSNSGFDTSSSATINRYGDLISRV+LEI LPPLAAP++ I G SP   +  AD AA++VN IG+ACWEDVQVEIGGSLVDQLYSDFA+I+EELAGRPG+RLEE IG+VQ+S  VD+DLIEKA +QQ LYVPLPLW SKYQPAT+GLALPIVALTFHDVRIKIKTR I++CT V ++D  + AW L E  +PLN NT T LVN+DLKIRLM+TSVYLD TER AMSSV HSFLI+TAQRQ+ ++ AN S+K E KL+ NHP S++ W VRPL+WNT AGRRRFSCGFRDRYDF+  EA T  S LPYG+A+ PI  ASL+LNGH RWP DM S YF  H PY  WRTMP T I TYSFALEA QWQPTS LNFSRLDHVSLG+ F   +++SE   F EAYNLLVIRDGLGGLRFSN
Sbjct:  135 MTASGGVIQIAARGSQDAILNDSPTHTIWRSVHTRFTSCAMDDEFQDLSNSGFDTSSSATINRYGDLISRVTLEITLPPLAAPQVPITGTSPVTYHPAADTAAHWVNCIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEEAIGRVQFSDAVDEDLIEKAKKQQILYVPLPLWFSKYQPATYGLALPIVALTFHDVRIKIKTRSISECTCVLYKD--NAAWKLAENQIPLNANTGTALVNADLKIRLMVTSVYLDTTERTAMSSVVHSFLISTAQRQVHSIAANQSTKQEEKLFFNHPASSLIWFVRPLDWNTEAGRRRFSCGFRDRYDFTAHEASTDAS-LPYGDAVDPIRTASLTLNGHARWPTDMDSRYFRMHMPYCAWRTMPTTSIYTYSFALEAHQWQPTSHLNFSRLDHVSLGWTFCPNIKSSEAFSFVEAYNLLVIRDGLGGLRFSN 594          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A835Z0V5_9STRA (Putative major capsid protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V5_9STRA)

HSP 1 Score: 590 bits (1522), Expect = 2.380e-208
Identity = 296/424 (69.81%), Postives = 351/424 (82.78%), Query Frame = 1
Query:  121 MDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGAS-PAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            MDD+ QELSNSGFDTSSSATINRYGDLISR++LEI LPPLAAP++ +  A+ P   YA  D AA++VN+IG+ACWEDVQVEIGGSLVDQLYSDFA+I+EELAGRPG+RLEE IG+V YSAEVD DLIEKA + Q LYVPLPLW SKYQP+T+GLALPIVALTFHDVR+KIKTR IADCT V +++     W L + L PLN +T T LVN+DLKIRLM++SVYLD TER AMS+VTHSFLINT QRQ+ ++ A  S++ E KLY NHP S++ W+VRPL+WNT AGRRRFSCGF+DR+DF+  EA    S + YGNA+ PI ++SLSLNGHQRWP DMPS+YF  H PY +WRT+P+T I +YSFALEA+ WQPTS LNFSRLDHVSLG++F   +++SE   F EAYNLLVIRDGLGGLRFSN
Sbjct:    1 MDDDFQELSNSGFDTSSSATINRYGDLISRITLEIRLPPLAAPQVPVVPATNPVTYYASEDTAAHWVNAIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEESIGRVPYSAEVDLDLIEKAQKAQILYVPLPLWFSKYQPSTYGLALPIVALTFHDVRLKIKTRSIADCTCVVYKE--DDVWHLTD-LAPLNASTGTTLVNADLKIRLMVSSVYLDTTERTAMSTVTHSFLINTTQRQVHSIAAGQSTRQEEKLYFNHPSSSLIWIVRPLDWNTQAGRRRFSCGFKDRFDFTAYEASDDDSLI-YGNAVDPIVSSSLSLNGHQRWPTDMPSTYFRTHVPYCNWRTLPSTSIYSYSFALEASAWQPTSHLNFSRLDHVSLGWSFAPGIKSSEAFSFVEAYNLLVIRDGLGGLRFSN 420          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A835Z566_9STRA (FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z566_9STRA)

HSP 1 Score: 571 bits (1472), Expect = 1.750e-200
Identity = 279/439 (63.55%), Postives = 346/439 (78.82%), Query Frame = 1
Query:   79 TIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTV--TSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            TIW++VHTRFTSCA+DDE QELS SGF ++S+ATI+RYGDL+SR++LEIVLPPL+AP+I    A   A    AD  A+YVN IG+A WED  +EIGGS VDQL+SDF  I+EELAGR G+RLEE IG+V +SA+VD+DLIEK++R+QTLYVPLPLW SKYQPATWGLALPIVAL+FH++++K+KTR IA+C  V ++D+    W L + L P+N  T T LVNSD+KIRL+++ VYLDVTER AMSSV HSFLIN  QRQ+  V A   SK+E KL+ NHPCS++ W +RPL+WNT  GRRRFSCG++DRYDFSH++ G+V  T  LP+G+AI  I  ASLSLNGHQRWP D  S+YF    PY  WRTMP T I TYSFAL+A  WQPT+ LNFSR +HVSLG  F A ++ASE++   E+YNLL+I +GLGGL+FSN
Sbjct:    1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGD-WRLSD-LAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 437          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A835Z3V1_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V1_9STRA)

HSP 1 Score: 540 bits (1392), Expect = 2.220e-188
Identity = 270/436 (61.93%), Postives = 343/436 (78.67%), Query Frame = 1
Query:   79 TIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEI--AIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTV--TSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGG 1374
            TI+++VHTRFTS A+DD+ QELS SGF ++S+AT++RYGDLISR++LEIVLP L AP+I    AGAS  A YA  +  AYYVN IG+A WED  +EIGGS +DQL+SDF  I+EE+AGR GLRLEE +G+V +S  VDDDLIEK+SR+QTLYVPLPLW SKY PAT+GLALPIVAL+FH++++K+KTR IA+C  V ++DA    W L + L P+N  T T LVNSDLK+RL+++ VYLDVTER AMSSV HS LIN  QRQ+ +V A   +K E KL++NHPC+ + W +RPL+WNT  GRRRFSCG++DR+DFSH+E G+V  T  LP+G+++  I  ASLSLNGHQRWP DM ++YF    P+  WRTMP+TPI +YSFAL+A  WQPTS LNFSRLDH+SLG  F + ++ASE++ F E+YNLLVI +GLGG
Sbjct:    1 TIFKSVHTRFTSFALDDDFQELSTSGFASTSTATLSRYGDLISRITLEIVLPALKAPDIPDTSAGASAGALYA--ETGAYYVNCIGWAVWEDCILEIGGSTIDQLFSDFCFIYEEMAGRAGLRLEEAVGRVAFSEAVDDDLIEKSSREQTLYVPLPLWFSKYNPATFGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDAAGD-WRLSD-LAPINKATGTALVNSDLKMRLLVSYVYLDVTERNAMSSVAHSMLINVTQRQVMSVAAGSYAKSEQKLFMNHPCTDLIWYLRPLDWNTEGGRRRFSCGYKDRFDFSHQEEGSVDPTKGLPWGDSVDAITTASLSLNGHQRWPADMKANYFRVVTPWTSWRTMPSTPIYSYSFALQAHDWQPTSHLNFSRLDHISLGLTFASGIKASELVAFVESYNLLVIANGLGG 432          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A835ZCT3_9STRA (FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT3_9STRA)

HSP 1 Score: 525 bits (1352), Expect = 1.370e-181
Identity = 264/428 (61.68%), Postives = 328/428 (76.64%), Query Frame = 1
Query:   88 RAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEI--AIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTV--TSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSL--GFNFNAELQASEMLVFAEAYNLLV 1353
            RAVHTRFTSCA+DDE QELS SGF ++S+ATI+RYGDL+SR++LEIVLPPL+AP+I    +GA   A+YA  D AAYYVNSI +A WEDV +EIGGS VDQL+SDF  I+EELAGR G+RLEE IG+V +SA+VD+DL EK++R+QTLYVPLPLW SKYQPATWGLALPIVAL+FH++++K+KTR IA+C  V ++D+    W L + L P+N  T T LVNSD+K+RL+++ VYLDVTER AMSSV HSFLIN  QRQ+  V A   SK+E KL+ NHPCS++ W +RP +WN   GRRRFSCG++DR+DFSH+E GTV  T  L +G+ + PI  AS SLNGHQRWP D  + YF    PY  WRTMP T I TYSFAL+A  WQPT+ LN SRL    L  G  F A ++ASE++   E+YNLL+
Sbjct:   40 RAVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSSGAGAGAHYA--DTAAYYVNSIDFAAWEDVILEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLAEKSAREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDSAGD-WRLSD-LAPINATTGTALVNSDMKLRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPQDWNLEGGRRRFSCGYKDRFDFSHQEQGTVDATKGLAWGDTVDPITTASRSLNGHQRWPQDQNAVYFRVLTPYTSWRTMPTTNIYTYSFALQAQDWQPTAHLNMSRLKKTGLKNGLTFAAGIKASELIAMVESYNLLI 463          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: B5LWE8_9PHYC (Putative major capsid protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE8_9PHYC)

HSP 1 Score: 364 bits (934), Expect = 5.050e-119
Identity = 191/442 (43.21%), Postives = 283/442 (64.03%), Query Frame = 1
Query:   79 TIWRAVHTRFTSCAMDDELQELSNS--GFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHR---DAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            T+++ VH R+TS A D E  + S    GF    SA ++RYGDL++ + +E+ LPP+ A   A    +     A AD AAY+VN+IGYA   ++Q+EIGG+ VD LY ++   +E +  RPG RL E IGK  YSA+V++D+IE A + +TLYVPLP W +KY   T GL++P++ALT+H++++K+  RP+++C  V +R   +   + + L EG  P+N  + + LV+SD+  +L+I+ VYLD  ER A +S  HS+LI   QRQ+  + +  S+  + KLY NHP + + W VRP +W TN  RRRFS G  D +DFS     T +    +G+ I P+ +ASL+LNGH R+P  MP  +F   QP + W       +  +SF+L+   WQPTSTLN SR+DHV L   + + +  S++ VFAE+YNLLV++DG+GG+R+SN
Sbjct:    2 TLFKTVHKRYTSFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVTDMFMEVALPPIEA--AATVTNAEGVEVADADKAAYWVNAIGYALISEIQIEIGGTEVDTLYPEWMFFWESMTQRPGARLGEQIGKFAYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMET-GLSIPLIALTYHEIKVKVTFRPLSECCCVVYRAEDETHGEYFALAEGKTPVNTTSGSTLVSSDMDAKLLISYVYLDKAERDAFASTEHSYLITRTQRQLHAITSAGSASDQIKLYFNHPSNCLAWFVRPTDWTTN--RRRFSVGHMDSFDFS---LHTDSDVSVWGDVIDPVKSASLNLNGHSRFPDGMPGLFFRQTQPIMKWPNCSDGFMYVFSFSLQGGAWQPTSTLNMSRIDHVQLELKYGSNIPTSDVFVFAESYNLLVVKDGMGGVRYSN 435          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: Q6XLY6_9PHYC (FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHYC)

HSP 1 Score: 363 bits (932), Expect = 1.010e-118
Identity = 193/443 (43.57%), Postives = 287/443 (64.79%), Query Frame = 1
Query:   79 TIWRAVHTRFTSCAMDDELQELSNS--GFDTSSSATINRYGDLISRVSLEIVLPPL-AAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRD---AVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            T+++ VH RFTS A D E  + S    GF    SATI+RYGDL++ + +EI LPP+ AA  +  A  +  A+   AD AAY+VN+IG+A   +VQ+EIGG+ VD LY ++   +EE+  RPG RL E IGK  YSA+V++D+IE A + +TLYVPLP W +KY     GL++P++ALT+H++++K+  RP+++C  V +R       + + L EG +P+N  + + LV+SD+  +L+++ VYLD  ER A ++  H++LI T QRQ+  + +  SS  + KLY NHP + +TW VRP +W TN  RRR+S G  D +D+S K    V+    +G+   P+  ASL+LNGH R+P +MP  +F   QP + W       +  +SF+L+   WQPTSTLN SR+DHV L   +   +  S + VFAE+YNLLV+++G+GG+R+SN
Sbjct:    2 TLFKTVHRRFTSFAEDLEENDFSAGTVGFGQKVSATISRYGDLVTDMFMEIHLPPIEAAVNVTDASGNTVAD---ADKAAYWVNAIGFALISEVQIEIGGTEVDILYPEWMFFWEEMTQRPGARLGEQIGKFTYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMEA-GLSIPLIALTYHEIKVKVTFRPLSECCCVVYRTEDPTHGEYYALAEGKVPVNSTSGSTLVSSDMDAKLLVSYVYLDKKERDAFATTEHTYLITTTQRQMHAITSAGSSSDQIKLYFNHPSNCLTWFVRPTDWMTN--RRRYSVGHMDLFDYSLKSTSDVSV---WGDVTDPVKTASLTLNGHSRFPDNMPGLFFRQTQPIMKWPNCSNGYMYVFSFSLQGGSWQPTSTLNMSRIDHVQLELKYGTSIPTSNVFVFAESYNLLVVKEGMGGVRYSN 435          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: Q8QNG3_ESV1K (EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K)

HSP 1 Score: 352 bits (903), Expect = 8.580e-114
Identity = 192/441 (43.54%), Postives = 280/441 (63.49%), Query Frame = 1
Query:   79 TIWRAVHTRFTSCAMDDELQELSNS--GFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATW---GLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAV---SQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFS-HKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGG 1374
            T++++ H R+T+ A D E  + S    GF    SA ++RYGDL+S V LE+ LP + A E  + GA      A AD AAY+VN+IGYA   +V++EIGG+ VD LYS++  ++EEL  RPG RL E IGK  YSA+V++D+IE AS+++ LYVPLP W +KY    W   GL++P++ALT+H+++IK+  RP+ADC  V +R++       W L    +P+N  + + +  SD+  RL+++ VYLD  ER A +SV H +LI T QRQ+ ++ +  +   + KLY NHP +A+ W VRP ++     RRRFS G +D +DFS  KE  TV+    +G+    +A+ASL+LNGH R+P  +P  +F   QP + W   PA     ++FA     W PTSTLN SR+DHV L   +   +  S+++VF EAYNLLVI++G+GG
Sbjct:    2 TLFKSQHKRYTNFAEDFEENDFSAGTVGFGQRVSANVSRYGDLVSDVLLEVTLPAIQASESVVNGAG--TEVADADKAAYWVNAIGYAIISEVEIEIGGTEVDTLYSEWMFLWEELTQRPGARLGEQIGKFAYSADVEEDMIEFASQERKLYVPLPFWFNKY----WMEHGLSIPLIALTYHEIKIKVSFRPLADCCAVVYRESDPTWGDYWALAADKIPINTASASAMAASDMDARLLVSYVYLDQEERQAFASVQHEYLITTTQRQMHSITSASAKSDQLKLYFNHPSNALIWFVRPTDFKNL--RRRFSVGHKDMFDFSLQKEDATVSM---WGDVTDSVASASLTLNGHSRFPDSLPGLFFRQVQPALKWPNTPAGYTYLFTFAALGGVWNPTSTLNMSRIDHVQLELKYGDNIPTSDVIVFNEAYNLLVIKEGMGG 431          
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Match: A0A6C0K9I3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K9I3_9ZZZZ)

HSP 1 Score: 197 bits (500), Expect = 8.700e-55
Identity = 144/460 (31.30%), Postives = 223/460 (48.48%), Query Frame = 1
Query:   13 GGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSNSG-FDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 1389
            GG++Q+ A G QD  +   P  T ++ V+ R T+ A++   Q  + S       S  ++R GDL++ + LE+VLP L          S    Y PA         +G+A  +  ++EIGG  VD+ Y ++  I++EL        E+  G   Y   V  D     +  +TLY+PL  W ++      GLALP++AL +H+V++ I+ RP AD  V      ++      +G            V S+ + +L +  VYLD  ER   + ++H +LI+  Q   A    + +S L  +L  NHP   + WV +           +      DR++F  K           G  +  + +A+L LNGH+R+    P+SYF   QPY H   +PA PI  YSFAL   + QP+ T NFSR+D+ SL  N  +    + +LV+A  YN+L I  G+GGL +SN
Sbjct:    3 GGLMQLVAYGAQDIYLTGEPQITFFKVVYRRHTNFAIESIEQTFTGSDDLGKKVSCVVSRNGDLVNGIHLEVVLPVL----------SGTTAYTPA---------VGHALIQSAEIEIGGQKVDKHYGEWLEIWDELTASE----EKSSG---YMDMVAKDATVMHTGGETLYIPLQFWFNRNP----GLALPLIALQYHEVKVLIEFRPFADLLVENTGGTITGKGLTSDG------------VASEFQAKLYVDYVYLDTEERRRFAQMSHEYLIDQLQHTGAETVDSGNSSL--RLNFNHPVKELVWVFQS----------QADIDKNDRFNFGTK-----------GKGVEVLKDATLLLNGHERFS-SRPASYFRLMQPYQHHTRVPAKPIYVYSFALRPEEHQPSGTCNFSRIDNASLKINTESAFSGN-VLVYAVNYNVLRIVSGMGGLAYSN 395          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176230 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBK3_9STRA0.000e+0100.00Putative major capsid protein n=1 Tax=Tribonema mi... [more]
A0A835Z4S3_9STRA1.010e-24273.87Large eukaryotic DNA virus major capsid protein-do... [more]
A0A835Z0V5_9STRA2.380e-20869.81Putative major capsid protein n=3 Tax=Tribonema mi... [more]
A0A835Z566_9STRA1.750e-20063.55FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835Z3V1_9STRA2.220e-18861.93Putative major capsid protein n=1 Tax=Tribonema mi... [more]
A0A835ZCT3_9STRA1.370e-18161.68FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B5LWE8_9PHYC5.050e-11943.21Putative major capsid protein n=1 Tax=Feldmannia s... [more]
Q6XLY6_9PHYC1.010e-11843.57FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHY... [more]
Q8QNG3_ESV1K8.580e-11443.54EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K[more]
A0A6C0K9I3_9ZZZZ8.700e-5531.30Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:413458..414849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176230|e_gw1.134.58.1
GOsGO:0005575,GO:0019012
DescriptionLarge eukaryotic DNA virus major capsid protein
COG categoryS
Max annot lvl10239|Viruses
EggNOG OGs4QAX7@10239|Viruses,4QXNA@35237|dsDNA viruses no RNA stage
Evalue1.41e-114
Seed ortholog654926.Q8QNG3_ESV1K
Hectar predicted targeting categoryother localisation
TranscriptId176552
TrackFilteredModels1
ProteinId176230
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176230gene_12357Tribonema minus UTEX_B_3156 geneContig_134 413458..414849 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12357_1exon_12357_1Tribonema minus UTEX_B_3156 exonContig_134 413458..414849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12357CDS_12357Tribonema minus UTEX_B_3156 CDSContig_134 413458..414849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176230Trimin1|176230|e_gw1.134.58.1Tribonema minus UTEX_B_3156 polypeptideContig_134 413458..414849 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12357 ID=mRNA_12357|Name=jgi.p|Trimin1|176230|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1392bp|location=Sequence derived from alignment at Contig_134:413458..414849+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCGTCAGGTGGAGTCATCCAGATCGCCGCCCGCGGCACCCAGGA
CGCCGTCATCAACGACAGCCCCACCCACACCATCTGGCGCGCCGTCCACA
CGCGCTTCACCAGCTGCGCCATGGACGACGAGCTGCAGGAGCTCAGCAAC
TCGGGCTTCGACACCTCCTCCAGCGCCACCATCAACCGCTACGGCGACCT
CATCTCCCGCGTCTCCCTGGAGATCGTCCTCCCCCCCCTGGCCGCCCCTG
AGATCGCCATCGCCGGCGCCAGCCCCGCCGCCAACTACGCCCCCGCCGAC
TGCGCCGCCTACTACGTCAACTCCATCGGCTACGCCTGCTGGGAGGACGT
ACAGGTGGAGATCGGGGGCTCCCTCGTCGACCAGCTCTACAGCGACTTCG
CCGTCATCTTCGAGGAGCTCGCGGGCCGCCCGGGCCTGCGCCTCGAGGAG
TGCATCGGCAAGGTCCAGTACTCCGCGGAGGTGGACGACGACCTCATCGA
GAAGGCCTCCCGCCAGCAGACCCTGTACGTCCCGCTCCCCCTCTGGATGA
GCAAGTACCAGCCCGCCACCTGGGGCCTCGCCCTCCCGATCGTCGCCCTC
ACCTTCCACGACGTCCGCATCAAGATCAAGACGCGCCCCATCGCAGACTG
CACTGTGGTCTGTCACCGCGACGCCGTATCGCAAGCGTGGACGCTAGACG
AGGGCCTGCTGCCCCTCAACGGCAACACCCTCACCCCCCTCGTCAACTCG
GACCTGAAGATCCGCCTCATGATCACCTCCGTCTACCTGGACGTCACCGA
GCGCGCGGCCATGAGCTCCGTCACCCACTCCTTCCTCATCAACACGGCCC
AGCGCCAGATCGCCACCGTCCCCGCCAACGTCTCCTCCAAGCTCGAGACC
AAGCTGTACCTGAACCACCCCTGCAGCGCCATGACCTGGGTGGTGCGCCC
CCTGAACTGGAACACCAACGCGGGCCGCCGCCGCTTCTCATGCGGCTTCC
GCGACCGCTACGACTTCTCCCACAAGGAGGCGGGCACCGTGACCTCGGCC
CTCCCCTACGGCAACGCCATCTCCCCCATCGCCAACGCCTCCCTCTCCCT
CAACGGACACCAGAGGTGGCCCGTCGACATGCCCTCCTCCTACTTCACCA
ACCACCAGCCCTACGTCCACTGGCGCACCATGCCTGCTACGCCCATTATG
ACGTACAGCTTCGCATTAGAAGCGGCGCAGTGGCAGCCGACCTCGACGCT
CAACTTCAGCCGTCTCGACCACGTGTCGCTGGGCTTCAACTTCAACGCCG
AGCTGCAGGCGAGCGAGATGCTGGTGTTCGCGGAGGCCTACAACCTGCTG
GTCATCCGCGATGGCCTCGGCGGGCTGAGGTTCAGCAACTAG
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protein sequence of jgi.p|Trimin1|176230

>Trimin1|176230|e_gw1.134.58.1 ID=Trimin1|176230|e_gw1.134.58.1|Name=jgi.p|Trimin1|176230|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=464bp
MPASGGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSN
SGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPAD
CAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEE
CIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVAL
TFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNS
DLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLET
KLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSA
LPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIM
TYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLL
VIRDGLGGLRFSN*
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mRNA from alignment at Contig_134:413458..414849+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12357 ID=mRNA_12357|Name=jgi.p|Trimin1|176230|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1392bp|location=Sequence derived from alignment at Contig_134:413458..414849+ (Tribonema minus UTEX_B_3156 )
ATGCCCGCGTCAGGTGGAGTCATCCAGATCGCCGCCCGCGGCACCCAGGA CGCCGTCATCAACGACAGCCCCACCCACACCATCTGGCGCGCCGTCCACA CGCGCTTCACCAGCTGCGCCATGGACGACGAGCTGCAGGAGCTCAGCAAC TCGGGCTTCGACACCTCCTCCAGCGCCACCATCAACCGCTACGGCGACCT CATCTCCCGCGTCTCCCTGGAGATCGTCCTCCCCCCCCTGGCCGCCCCTG AGATCGCCATCGCCGGCGCCAGCCCCGCCGCCAACTACGCCCCCGCCGAC TGCGCCGCCTACTACGTCAACTCCATCGGCTACGCCTGCTGGGAGGACGT ACAGGTGGAGATCGGGGGCTCCCTCGTCGACCAGCTCTACAGCGACTTCG CCGTCATCTTCGAGGAGCTCGCGGGCCGCCCGGGCCTGCGCCTCGAGGAG TGCATCGGCAAGGTCCAGTACTCCGCGGAGGTGGACGACGACCTCATCGA GAAGGCCTCCCGCCAGCAGACCCTGTACGTCCCGCTCCCCCTCTGGATGA GCAAGTACCAGCCCGCCACCTGGGGCCTCGCCCTCCCGATCGTCGCCCTC ACCTTCCACGACGTCCGCATCAAGATCAAGACGCGCCCCATCGCAGACTG CACTGTGGTCTGTCACCGCGACGCCGTATCGCAAGCGTGGACGCTAGACG AGGGCCTGCTGCCCCTCAACGGCAACACCCTCACCCCCCTCGTCAACTCG GACCTGAAGATCCGCCTCATGATCACCTCCGTCTACCTGGACGTCACCGA GCGCGCGGCCATGAGCTCCGTCACCCACTCCTTCCTCATCAACACGGCCC AGCGCCAGATCGCCACCGTCCCCGCCAACGTCTCCTCCAAGCTCGAGACC AAGCTGTACCTGAACCACCCCTGCAGCGCCATGACCTGGGTGGTGCGCCC CCTGAACTGGAACACCAACGCGGGCCGCCGCCGCTTCTCATGCGGCTTCC GCGACCGCTACGACTTCTCCCACAAGGAGGCGGGCACCGTGACCTCGGCC CTCCCCTACGGCAACGCCATCTCCCCCATCGCCAACGCCTCCCTCTCCCT CAACGGACACCAGAGGTGGCCCGTCGACATGCCCTCCTCCTACTTCACCA ACCACCAGCCCTACGTCCACTGGCGCACCATGCCTGCTACGCCCATTATG ACGTACAGCTTCGCATTAGAAGCGGCGCAGTGGCAGCCGACCTCGACGCT CAACTTCAGCCGTCTCGACCACGTGTCGCTGGGCTTCAACTTCAACGCCG AGCTGCAGGCGAGCGAGATGCTGGTGTTCGCGGAGGCCTACAACCTGCTG GTCATCCGCGATGGCCTCGGCGGGCTGAGGTTCAGCAACTAG
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Coding sequence (CDS) from alignment at Contig_134:413458..414849+

>mRNA_12357 ID=mRNA_12357|Name=jgi.p|Trimin1|176230|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1392bp|location=Sequence derived from alignment at Contig_134:413458..414849+ (Tribonema minus UTEX_B_3156 )
ATGCCCGCGTCAGGTGGAGTCATCCAGATCGCCGCCCGCGGCACCCAGGA
CGCCGTCATCAACGACAGCCCCACCCACACCATCTGGCGCGCCGTCCACA
CGCGCTTCACCAGCTGCGCCATGGACGACGAGCTGCAGGAGCTCAGCAAC
TCGGGCTTCGACACCTCCTCCAGCGCCACCATCAACCGCTACGGCGACCT
CATCTCCCGCGTCTCCCTGGAGATCGTCCTCCCCCCCCTGGCCGCCCCTG
AGATCGCCATCGCCGGCGCCAGCCCCGCCGCCAACTACGCCCCCGCCGAC
TGCGCCGCCTACTACGTCAACTCCATCGGCTACGCCTGCTGGGAGGACGT
ACAGGTGGAGATCGGGGGCTCCCTCGTCGACCAGCTCTACAGCGACTTCG
CCGTCATCTTCGAGGAGCTCGCGGGCCGCCCGGGCCTGCGCCTCGAGGAG
TGCATCGGCAAGGTCCAGTACTCCGCGGAGGTGGACGACGACCTCATCGA
GAAGGCCTCCCGCCAGCAGACCCTGTACGTCCCGCTCCCCCTCTGGATGA
GCAAGTACCAGCCCGCCACCTGGGGCCTCGCCCTCCCGATCGTCGCCCTC
ACCTTCCACGACGTCCGCATCAAGATCAAGACGCGCCCCATCGCAGACTG
CACTGTGGTCTGTCACCGCGACGCCGTATCGCAAGCGTGGACGCTAGACG
AGGGCCTGCTGCCCCTCAACGGCAACACCCTCACCCCCCTCGTCAACTCG
GACCTGAAGATCCGCCTCATGATCACCTCCGTCTACCTGGACGTCACCGA
GCGCGCGGCCATGAGCTCCGTCACCCACTCCTTCCTCATCAACACGGCCC
AGCGCCAGATCGCCACCGTCCCCGCCAACGTCTCCTCCAAGCTCGAGACC
AAGCTGTACCTGAACCACCCCTGCAGCGCCATGACCTGGGTGGTGCGCCC
CCTGAACTGGAACACCAACGCGGGCCGCCGCCGCTTCTCATGCGGCTTCC
GCGACCGCTACGACTTCTCCCACAAGGAGGCGGGCACCGTGACCTCGGCC
CTCCCCTACGGCAACGCCATCTCCCCCATCGCCAACGCCTCCCTCTCCCT
CAACGGACACCAGAGGTGGCCCGTCGACATGCCCTCCTCCTACTTCACCA
ACCACCAGCCCTACGTCCACTGGCGCACCATGCCTGCTACGCCCATTATG
ACGTACAGCTTCGCATTAGAAGCGGCGCAGTGGCAGCCGACCTCGACGCT
CAACTTCAGCCGTCTCGACCACGTGTCGCTGGGCTTCAACTTCAACGCCG
AGCTGCAGGCGAGCGAGATGCTGGTGTTCGCGGAGGCCTACAACCTGCTG
GTCATCCGCGATGGCCTCGGCGGGCTGAGGTTCAGCAACTAG
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