mRNA_12355 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176197
Unique NamemRNA_12355
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A835ZCW8_9STRA (Putative serine/threonine kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW8_9STRA)

HSP 1 Score: 544 bits (1402), Expect = 1.120e-195
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
Query:    1 MLVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSDARLSRARTG 819
            MLVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSDARLSRARTG
Sbjct:    1 MLVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSDARLSRARTG 273          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A835Z256_9STRA (Putative serine/threonine protein kinase n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z256_9STRA)

HSP 1 Score: 340 bits (871), Expect = 6.950e-114
Identity = 164/263 (62.36%), Postives = 207/263 (78.71%), Query Frame = 1
Query:    1 MLVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSS 789
            M++G ++LT+++GEGAFGQVRLGT++ T  RVAVK+M+L R++  GMSV+VRREIS LKKL HP VV+L+EVLKSS +++LV  LAEGGDLFDK+A QE FDE   R +F Q+L GVSYCHS GICHRDLKPEN+LL A+G V+I+DFGFSR  +++ AV+Q+YTR GTPN+IAPEV+SGRGY    ADVWS G +L+ ++AG LPFDEE L  LY KIR GEF +PR+   LAR L+S ML V    R T+EGV   PWM++
Sbjct:    1 MIIGDFELTNLLGEGAFGQVRLGTNMRTEARVAVKIMELQRIKDLGMSVNVRREISSLKKLRHPNVVKLIEVLKSSSHIYLVCELAEGGDLFDKIAEQELFDEETTRNYFRQILAGVSYCHSMGICHRDLKPENILLAADGTVRISDFGFSRACIDQHAVIQVYTRVGTPNFIAPEVLSGRGYDAFSADVWSAGAVLFVMLAGYLPFDEEDLESLYTKIRRGEFKYPRYVHPLARNLISSMLVVDPLKRNTIEGVLKDPWMTN 263          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A835Z603_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z603_9STRA)

HSP 1 Score: 335 bits (858), Expect = 4.370e-111
Identity = 159/273 (58.24%), Postives = 209/273 (76.56%), Query Frame = 1
Query:    1 MLVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSDARLSRARTG 819
            M VGKY+L +++G+GAFGQVRLG H DTG RVA+KVMD+DR++++ M   VRREIS++K+L HP V+ L+EVLKS  ++FLV  LAEGGDLFDK+  Q+ FDE   R +F+Q+L+ + YCHS GICHRDLKPEN+LL A+G++++ DFGFSR FL+ G VL++YTRCGTPN+ APEV+SGR Y    ADVWSLGV+L+ ++AG LPFD+ S+ DL AKIR  +F+FP H  +LARGLVS MLT     R+ +  +  HPWM+  + LSR   G
Sbjct:    1 MFVGKYELLNLLGDGAFGQVRLGVHSDTGQRVAIKVMDVDRIKEQRMCRSVRREISVMKRLKHPNVLSLIEVLKSESHVFLVCELAEGGDLFDKIVDQDMFDEETTRTYFTQILDAMEYCHSVGICHRDLKPENILLAADGSIRVADFGFSRAFLDHGTVLEVYTRCGTPNFCAPEVLSGRRYDPVKADVWSLGVVLFVMLAGYLPFDDVSMDDLCAKIRVADFSFPHHVRALARGLVSLMLTADPSQRIGVADIRRHPWMARRS-LSRRTCG 272          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A835ZM85_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM85_9STRA)

HSP 1 Score: 300 bits (769), Expect = 3.790e-99
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 1
Query:    4 LVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSS 789
            +VGKY+LT+ +G+GAFG+V LGTH+DTG RV+VK+MDL +VR  G S +V R+IS+L KLDH  +V L+EVLKS  ++FLV A  EGGDLFDK+  QE F+E  AR +F+++ + V YCH +G+CHRDLKPEN+ L A+G + I+DFGFSR F++   ++ +YTRCGTPNY APEV + R Y    ADVWS+GV+LY ++AG LPFDE SL  LY KI   ++  PRH P  AR L+  ++ V    R+TL  + AHPWM+S
Sbjct:    3 VVGKYELTNKLGDGAFGEV-LGTHIDTGARVSVKMMDLHQVRDMGRSRNVLRKISMLMKLDHAGIVHLIEVLKSDHHIFLVCA--EGGDLFDKLVQQEVFNEQTARTYFAKIADAVDYCHQQGVCHRDLKPENLFLSADGRLLISDFGFSRAFIDHDTLMDVYTRCGTPNYCAPEVFTCRSYDARAADVWSMGVVLYVMVAGYLPFDERSLSTLYHKICTADYKCPRHMPRAARQLIERIIVVDPAARITLAEIKAHPWMAS 261          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A7S3XYE1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYE1_HETAK)

HSP 1 Score: 273 bits (698), Expect = 2.950e-88
Identity = 128/269 (47.58%), Postives = 188/269 (69.89%), Query Frame = 1
Query:    7 VGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTF---LEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSDARLS 804
            VGKY++   IGEG FG+V+   + +TG +VA+KV+D   ++K+ M   +++EIS++K + HP VVRL+EVL S   +F+V  +  GG+LFDK+ ++  F E  AR +F Q+L GV YCH+RG+CHRDLKPEN+LLD  GN++I+DFG S  +    +EG  L ++T CGTPNY+APEV++ +GY G  AD+WS GVILY + AG LPFDE S+  L+ KI+  +F++PR F    RGL+  ++TV V+ RLT+  +   PW++ +  L+
Sbjct:    6 VGKYEIGKTIGEGTFGKVKSAINTETGEQVALKVLDKSAIQKQNMGPQIKKEISIMKMVSHPHVVRLIEVLASRTKIFIVLEMVTGGELFDKIVAEGRFSEDKARFYFRQLLAGVEYCHARGVCHRDLKPENLLLDENGNLKISDFGLSALYSGGTDEGMKL-LHTTCGTPNYVAPEVLADQGYDGRKADLWSCGVILYVLQAGFLPFDENSMSALFKKIQAADFSYPRWFSQEVRGLLDRIMTVDVNKRLTIPQMKEDPWITLNGTLA 273          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A836CC03_9STRA (CBL-interacting-like PK n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC03_9STRA)

HSP 1 Score: 275 bits (704), Expect = 3.230e-87
Identity = 129/260 (49.62%), Postives = 183/260 (70.38%), Query Frame = 1
Query:    7 VGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFL--EEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPW 780
            VGKY++   IGEG FG+V+L  + +T  +VA+KV+D   ++K+ M   V+REIS++K + H  VV+L EVL SS  +FLV  L  GG+LFDK+  ++ F E  AR +F Q++EGV YCHS+G+CHRDLKPEN+LLD+ GNV+I+DFG S  +   ++ A+  ++T CGTPNY+APEV++ RGY G  ADVWSLGVILY ++AG LPFDE S+ +L+ KI+  +F++PR F    R L+  +L      RL++  +  HPW
Sbjct:    5 VGKYEIGKTIGEGTFGKVKLAVNTETNEKVAIKVLDKSIIQKQNMGAQVKREISIMKLVRHSYVVQLKEVLASSTRIFLVCELITGGELFDKIVEKQRFSEDEARFYFKQLVEGVDYCHSQGVCHRDLKPENILLDSNGNVKISDFGLSNLYSGGDDEALKLLHTTCGTPNYVAPEVLADRGYDGRMADVWSLGVILYVLLAGFLPFDEPSMSNLFRKIQAADFSYPRWFSEDVRSLIDAILVPDPRQRLSIAQIRGHPW 264          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: D7FMK2_ECTSI (Possible CBL-interacting-like PK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMK2_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 1.260e-85
Identity = 128/260 (49.23%), Postives = 185/260 (71.15%), Query Frame = 1
Query:    7 VGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFL--EEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPW 780
            VGKY++   IGEG FG+V+L  + + G ++A+KV+D   ++++ M   V+REIS++K + HP VV+L EVL SS  +FLV  L  GG+LFDK+  ++ F E  AR +F Q+LEG+ YCHS+G+CHRDLKPEN+LLD  GNV+I+DFG S  +   ++ A+  ++T CGTPNY+APEV++ +GY G  ADVWS+GVILY ++AG LPFDE S+  L++KI+  +F++PR F   AR ++  +L      RLTL  + AHP+
Sbjct:    5 VGKYQVGRTIGEGTFGKVKLAINTENGEKMAIKVLDKSIIQRQNMGAQVKREISIMKLVRHPYVVQLKEVLASSSKIFLVCELITGGELFDKIVEKQRFTEDEARFYFRQLLEGMEYCHSQGVCHRDLKPENILLDGAGNVKISDFGLSNLYSGGDDEALKLLHTTCGTPNYVAPEVLADKGYDGRMADVWSMGVILYVLLAGFLPFDEPSMSTLFSKIQAADFSYPRWFSPEARSVIDRILVPDPKQRLTLAQMKAHPF 264          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A1X0NQ63_9TRYP (Putative serine/threonine protein kinase, putative,protein kinase n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NQ63_9TRYP)

HSP 1 Score: 265 bits (676), Expect = 6.750e-85
Identity = 129/275 (46.91%), Postives = 188/275 (68.36%), Query Frame = 1
Query:    7 VGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLE----EGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSDARLSRARTG 819
            VG+Y+L   IG G F +V++G  V+TG+  AVK++D D++ +E M   +RRE++++K L  P V++L EV++++ +++LV  L  GG+LFD++A+ + FDE  ARR+F Q++ GV+YCH +GI HRDLKPEN+LLD    ++I+DFG S         +G +LQ  T CGTPNY+APEV+  RGY G  ADVWS GVIL+ ++AG LPFD+E++  L+AKI  GE+  PRHF   AR L++ MLTV    R+T++ +  HPW   D   +   TG
Sbjct:    7 VGRYELGPTIGSGNFSKVKIGRDVETGVEWAVKIVDKDQLVRENMQEQLRREVAVMKMLRQPNVIQLREVMQTTYHIYLVLELVRGGELFDRIAAAKRFDEPTARRYFHQLIAGVNYCHMQGIAHRDLKPENLLLDESDTLKISDFGLSNLHRGNVGGQGTMLQ--TVCGTPNYVAPEVLKERGYDGVLADVWSCGVILFVMLAGYLPFDDENINGLFAKIERGEYRVPRHFSPEARDLIAKMLTVDPSKRITVKDIIQHPWFVVDWDPNMLNTG 279          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: U3LNS6_9TRYP (Protein kinase domain-containing protein (Fragment) n=1 Tax=Paratrypanosoma confusum TaxID=1470209 RepID=U3LNS6_9TRYP)

HSP 1 Score: 267 bits (682), Expect = 7.790e-84
Identity = 126/262 (48.09%), Postives = 179/262 (68.32%), Query Frame = 1
Query:    7 VGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSSD 792
            VGKY L   +G G F +V+LGTHVDTG + A+K++D + + KE M   ++REI ++K L HP +VRL EVL + ++++LV  L  GG+LFDK+   + FDE  AR++F Q++ G+ YCH +GI HRDLKPEN+LLD  G+++I+DFG S   +  GA+LQ  T CGTPNY+APEV+  +GY G  ADVWS GVIL+ ++AG +PFD++S   L+ KI  G++   RHF    + +++ MLTV  + R TL  +  HPW   D
Sbjct:    5 VGKYALGRTLGSGNFSKVKLGTHVDTGKQWAIKIIDKEELIKEHMEEQLKREIMVMKMLQHPYIVRLHEVLMTGKHIYLVLELVTGGELFDKIVEAKRFDEPTARKYFHQLIGGIYYCHKQGIAHRDLKPENLLLDGSGDLKISDFGLSNLHVN-GALLQ--TMCGTPNYVAPEVLKEKGYNGMMADVWSCGVILFVMLAGYMPFDDDSTNALFNKIERGDYRMARHFTDPVKDIIASMLTVDPEKRATLHDIMNHPWFKID 263          
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Match: A0A812R5X7_9DINO (CIPK23 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R5X7_9DINO)

HSP 1 Score: 265 bits (678), Expect = 5.420e-83
Identity = 121/264 (45.83%), Postives = 185/264 (70.08%), Query Frame = 1
Query:    7 VGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVHVRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEAFDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGFSRTFLEEGA---VLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAIMAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRLTLEGVAAHPWMSS 789
            VGKY++   +GEG FG+V+   + +TG RVA+K++D ++++++ M   +++EIS++K + H  VV L EVL S   +F+V  L  GG+LFDK+ S+  F+E  AR +F Q+++GVSYCHS+G+CHRDLKPEN+LLD + +++I+DFG S  +  E +   +  ++T CGTPNY+APEV+S +GY G  AD+WS GVILY ++AG LPFDE  +  L+ KI++ +F +P  F +  RGL+  +L      RLTL+GV +H W ++
Sbjct:    5 VGKYEIGRTLGEGTFGKVKYAVNTETGERVAIKILDKEKIQRQNMGAQIKKEISIMKMVKHDNVVSLYEVLASRTKIFIVLELITGGELFDKIVSEGRFNEEMARYYFRQLIKGVSYCHSQGVCHRDLKPENLLLDEKSSLKISDFGLSALYGGEASDDRMTLLHTTCGTPNYVAPEVLSDKGYDGRAADIWSCGVILYVLLAGFLPFDEPHMSALFRKIQKADFTYPSWFTAEVRGLLDQILVPDPAKRLTLDGVMSHSWFAA 268          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176197 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCW8_9STRA1.120e-195100.00Putative serine/threonine kinase (Fragment) n=1 Ta... [more]
A0A835Z256_9STRA6.950e-11462.36Putative serine/threonine protein kinase n=3 Tax=T... [more]
A0A835Z603_9STRA4.370e-11158.24Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZM85_9STRA3.790e-9954.96Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XYE1_HETAK2.950e-8847.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CC03_9STRA3.230e-8749.62CBL-interacting-like PK n=1 Tax=Tribonema minus Ta... [more]
D7FMK2_ECTSI1.260e-8549.23Possible CBL-interacting-like PK n=1 Tax=Ectocarpu... [more]
A0A1X0NQ63_9TRYP6.750e-8546.91Putative serine/threonine protein kinase, putative... [more]
U3LNS6_9TRYP7.790e-8448.09Protein kinase domain-containing protein (Fragment... [more]
A0A812R5X7_9DINO5.420e-8345.83CIPK23 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:408960..409778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176197|e_gw1.134.85.1
DescriptionOSK1. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota,1MFX1@121069|Pythiales
Evalue7.66e-81
Seed ortholog65071.PYU1_T000510
Hectar predicted targeting categoryother localisation
TranscriptId176519
TrackFilteredModels1
ProteinId176197
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176197gene_12355Tribonema minus UTEX_B_3156 geneContig_134 408960..409778 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12355_1exon_12355_1Tribonema minus UTEX_B_3156 exonContig_134 408960..409778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12355CDS_12355Tribonema minus UTEX_B_3156 CDSContig_134 408960..409778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176197Trimin1|176197|e_gw1.134.85.1Tribonema minus UTEX_B_3156 polypeptideContig_134 408960..409778 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12355 ID=mRNA_12355|Name=jgi.p|Trimin1|176197|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_134:408960..409778+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTCGGCAAGTACAAGCTCACCTCCGTCATCGGCGAGGGGGCCTT
CGGCCAGGTCCGCCTCGGCACCCACGTCGACACCGGCCTCCGCGTCGCCG
TCAAGGTGATGGACCTCGACAGGGTGCGCAAGGAGGGCATGTCCGTGCAC
GTCCGCAGGGAGATCTCCCTCCTCAAGAAGCTCGACCACCCCCGCGTCGT
GCGCCTCGTCGAGGTCCTCAAGTCCTCCCGCAACCTCTTCCTGGTCTCCG
CCCTCGCCGAGGGGGGGGACCTCTTCGACAAGATGGCCTCCCAGGAGGCC
TTCGACGAGACCGCCGCGAGGCGCCACTTCTCCCAGATGCTCGAGGGGGT
CTCCTACTGCCACTCCCGGGGCATCTGCCACAGGGACCTCAAGCCCGAGA
ACGTCCTGCTGGACGCCGAGGGGAACGTCCAGATCACCGACTTCGGCTTC
TCCAGGACCTTCCTCGAGGAGGGGGCGGTGCTGCAGATGTACACCCGCTG
CGGGACCCCCAACTACATCGCCCCCGAGGTCATCAGCGGACGGGGCTACA
GGGGCCCCCCCGCGGACGTCTGGAGCCTCGGCGTCATCCTGTACGCCATA
ATGGCGGGCTCCCTGCCCTTCGACGAGGAGTCCCTGCCGGACCTGTACGC
CAAGATCAGGGAGGGAGAGTTCGCCTTCCCCCGGCACTTCCCCTCCCTCG
CCCGGGGCCTGGTGTCCGGCATGCTGACGGTCGCCGTCGACGACCGCCTG
ACCCTCGAGGGAGTCGCCGCCCACCCCTGGATGTCCTCCGACGCCCGCCT
CAGCCGCGCCAGGACGGGC
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protein sequence of jgi.p|Trimin1|176197

>Trimin1|176197|e_gw1.134.85.1 ID=Trimin1|176197|e_gw1.134.85.1|Name=jgi.p|Trimin1|176197|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
MLVGKYKLTSVIGEGAFGQVRLGTHVDTGLRVAVKVMDLDRVRKEGMSVH
VRREISLLKKLDHPRVVRLVEVLKSSRNLFLVSALAEGGDLFDKMASQEA
FDETAARRHFSQMLEGVSYCHSRGICHRDLKPENVLLDAEGNVQITDFGF
SRTFLEEGAVLQMYTRCGTPNYIAPEVISGRGYRGPPADVWSLGVILYAI
MAGSLPFDEESLPDLYAKIREGEFAFPRHFPSLARGLVSGMLTVAVDDRL
TLEGVAAHPWMSSDARLSRARTG
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mRNA from alignment at Contig_134:408960..409778+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12355 ID=mRNA_12355|Name=jgi.p|Trimin1|176197|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_134:408960..409778+ (Tribonema minus UTEX_B_3156 )
ATGCTCGTCGGCAAGTACAAGCTCACCTCCGTCATCGGCGAGGGGGCCTT CGGCCAGGTCCGCCTCGGCACCCACGTCGACACCGGCCTCCGCGTCGCCG TCAAGGTGATGGACCTCGACAGGGTGCGCAAGGAGGGCATGTCCGTGCAC GTCCGCAGGGAGATCTCCCTCCTCAAGAAGCTCGACCACCCCCGCGTCGT GCGCCTCGTCGAGGTCCTCAAGTCCTCCCGCAACCTCTTCCTGGTCTCCG CCCTCGCCGAGGGGGGGGACCTCTTCGACAAGATGGCCTCCCAGGAGGCC TTCGACGAGACCGCCGCGAGGCGCCACTTCTCCCAGATGCTCGAGGGGGT CTCCTACTGCCACTCCCGGGGCATCTGCCACAGGGACCTCAAGCCCGAGA ACGTCCTGCTGGACGCCGAGGGGAACGTCCAGATCACCGACTTCGGCTTC TCCAGGACCTTCCTCGAGGAGGGGGCGGTGCTGCAGATGTACACCCGCTG CGGGACCCCCAACTACATCGCCCCCGAGGTCATCAGCGGACGGGGCTACA GGGGCCCCCCCGCGGACGTCTGGAGCCTCGGCGTCATCCTGTACGCCATA ATGGCGGGCTCCCTGCCCTTCGACGAGGAGTCCCTGCCGGACCTGTACGC CAAGATCAGGGAGGGAGAGTTCGCCTTCCCCCGGCACTTCCCCTCCCTCG CCCGGGGCCTGGTGTCCGGCATGCTGACGGTCGCCGTCGACGACCGCCTG ACCCTCGAGGGAGTCGCCGCCCACCCCTGGATGTCCTCCGACGCCCGCCT CAGCCGCGCCAGGACGGGC
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Coding sequence (CDS) from alignment at Contig_134:408960..409778+

>mRNA_12355 ID=mRNA_12355|Name=jgi.p|Trimin1|176197|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_134:408960..409778+ (Tribonema minus UTEX_B_3156 )
ATGCTCGTCGGCAAGTACAAGCTCACCTCCGTCATCGGCGAGGGGGCCTT
CGGCCAGGTCCGCCTCGGCACCCACGTCGACACCGGCCTCCGCGTCGCCG
TCAAGGTGATGGACCTCGACAGGGTGCGCAAGGAGGGCATGTCCGTGCAC
GTCCGCAGGGAGATCTCCCTCCTCAAGAAGCTCGACCACCCCCGCGTCGT
GCGCCTCGTCGAGGTCCTCAAGTCCTCCCGCAACCTCTTCCTGGTCTCCG
CCCTCGCCGAGGGGGGGGACCTCTTCGACAAGATGGCCTCCCAGGAGGCC
TTCGACGAGACCGCCGCGAGGCGCCACTTCTCCCAGATGCTCGAGGGGGT
CTCCTACTGCCACTCCCGGGGCATCTGCCACAGGGACCTCAAGCCCGAGA
ACGTCCTGCTGGACGCCGAGGGGAACGTCCAGATCACCGACTTCGGCTTC
TCCAGGACCTTCCTCGAGGAGGGGGCGGTGCTGCAGATGTACACCCGCTG
CGGGACCCCCAACTACATCGCCCCCGAGGTCATCAGCGGACGGGGCTACA
GGGGCCCCCCCGCGGACGTCTGGAGCCTCGGCGTCATCCTGTACGCCATA
ATGGCGGGCTCCCTGCCCTTCGACGAGGAGTCCCTGCCGGACCTGTACGC
CAAGATCAGGGAGGGAGAGTTCGCCTTCCCCCGGCACTTCCCCTCCCTCG
CCCGGGGCCTGGTGTCCGGCATGCTGACGGTCGCCGTCGACGACCGCCTG
ACCCTCGAGGGAGTCGCCGCCCACCCCTGGATGTCCTCCGACGCCCGCCT
CAGCCGCGCCAGGACGGGC
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