mRNA_12315 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141763
Unique NamemRNA_12315
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: A0A836CLU2_9STRA (ADP-ribosylation factor-like protein 2-binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.660e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 LLIAPSCANQEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMIGGFL 210
            LLIAPSCANQEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMIGGFL
Sbjct:    1 LLIAPSCANQEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMIGGFL 70
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: A0A6V2TH31_HETAK (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TH31_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-17
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 LLIAPSCANQEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMIGGFL 210
            L I  S    E+EFD VVGAL+EILLD+  +  Q  F  +HC +FED+ ENKLEYT IFN YTEMI  FL
Sbjct:   36 LEIGQSTNQTELEFDMVVGALEEILLDEEFTDLQTPFFKQHCDEFEDTDENKLEYTDIFNSYTEMIEEFL 105
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BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: A0A0S7HXF7_9TELE (ADP-ribosylation factor-like protein 2-binding protein n=5 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7HXF7_9TELE)

HSP 1 Score: 71.2 bits (173), Expect = 5.590e-14
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    4 LIAPSCAN-QEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMI 198
            L APSC++ +E  FD V+G + EI+++++    QR FLDRH  +FE+S ENKL YT IFN+Y E++
Sbjct:    5 LFAPSCSSPEEAAFDVVIGCILEIIMEEDFQLVQRSFLDRHYLEFEESDENKLSYTLIFNEYVELL 70
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: UPI0004A353E7 (ADP-ribosylation factor-like protein 2-binding protein isoform X1 n=2 Tax=Poecilia reticulata TaxID=8081 RepID=UPI0004A353E7)

HSP 1 Score: 70.9 bits (172), Expect = 9.950e-14
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 LIAPSCANQ-EVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMI 198
            LIA SC++  E  FD ++G + EI++++N    QR FLDRH  +FEDS ENKL YT IFN+Y E++
Sbjct:    5 LIAASCSSAAEAAFDTLIGCILEIVMEENFQLVQRTFLDRHYLEFEDSDENKLSYTLIFNEYVELL 70
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: UPI001CDCDAED (ADP-ribosylation factor-like protein 2-binding protein isoform X1 n=1 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDCDAED)

HSP 1 Score: 70.1 bits (170), Expect = 2.280e-13
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 LIAPSCANQ-EVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMI 198
            L APSC++  E  FD V+G + EI+++++    QR FLDRH  +FE+S ENKL YT IFN+Y E++
Sbjct:    5 LFAPSCSSAAEAAFDVVIGCILEIIMEEDFQLVQRSFLDRHYLEFEESDENKLSYTLIFNEYVELL 70
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: UPI0006B0745C (ADP-ribosylation factor-like protein 2-binding protein isoform X1 n=3 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0745C)

HSP 1 Score: 69.7 bits (169), Expect = 3.090e-13
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    7 IAPSCANQEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMIGGFL 210
            I  S +  E  FD++VG +++I+++      Q++F D++C  FED  ENKLEYT IFN YTE+I  ++
Sbjct:   21 IVGSSSGDEAMFDQIVGHIEDIIMEPEFQELQKDFFDKYCTVFEDKEENKLEYTTIFNHYTELIESYI 88
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BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: A0A8C5TZC2_9PASS (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Malurus cyaneus samueli TaxID=2593467 RepID=A0A8C5TZC2_9PASS)

HSP 1 Score: 68.9 bits (167), Expect = 4.530e-13
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   37 EFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMIGGFL 210
            EFD VVG L++I++DD+    QR FL++H H+F+DS ENKL YT IFN+Y  +I  ++
Sbjct:   20 EFDLVVGYLEDIIMDDDFQLIQRNFLEKHYHEFDDSEENKLIYTDIFNEYISLIEKYI 77
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: UPI000C6D9868 (ADP-ribosylation factor-like protein 2-binding protein isoform X2 n=3 Tax=Xiphophorus TaxID=8082 RepID=UPI000C6D9868)

HSP 1 Score: 70.1 bits (170), Expect = 6.190e-13
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 LIAPSCANQ-EVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMI 198
            L APSC++  E  FD V+G + EI+++++    QR FLDRH  +FE+S ENKL YT IFN+Y E++
Sbjct:   83 LFAPSCSSAAEAAFDVVIGCILEIIMEEDFQLVQRSFLDRHYLEFEESDENKLSYTLIFNEYVELL 148
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: A0A7S0IAQ7_MICPS (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IAQ7_MICPS)

HSP 1 Score: 70.5 bits (171), Expect = 6.260e-13
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   37 EFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMI 198
            +FD ++GAL+++L+ D  SR+Q EF    CH FED+ ENKLEYT IF++YTE +
Sbjct:   80 KFDTIIGALEDLLMSDGFSRRQAEFCRAKCHVFEDTEENKLEYTSIFDEYTETL 133
[Close]
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Match: UPI000C6EFECE (ADP-ribosylation factor-like protein 2-binding protein isoform X1 n=2 Tax=Xiphophorus TaxID=8082 RepID=UPI000C6EFECE)

HSP 1 Score: 70.1 bits (170), Expect = 7.330e-13
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 LIAPSCANQ-EVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAENKLEYTGIFNQYTEMI 198
            L APSC++  E  FD V+G + EI+++++    QR FLDRH  +FE+S ENKL YT IFN+Y E++
Sbjct:   83 LFAPSCSSAAEAAFDVVIGCILEIIMEEDFQLVQRSFLDRHYLEFEESDENKLSYTLIFNEYVELL 148
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141763 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLU2_9STRA3.660e-44100.00ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A6V2TH31_HETAK1.610e-1758.57ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A0S7HXF7_9TELE5.590e-1450.00ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI0004A353E79.950e-1451.52ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI001CDCDAED2.280e-1350.00ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI0006B0745C3.090e-1342.65ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A8C5TZC2_9PASS4.530e-1351.72ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI000C6D98686.190e-1350.00ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A7S0IAQ7_MICPS6.260e-1353.70ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI000C6EFECE7.330e-1350.00ADP-ribosylation factor-like protein 2-binding pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:166580..166789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141763|gw1.134.24.1
BRITEko00000,ko03036
KEGG koko:K16742
GOsGO:0001932,GO:0001934,GO:0002791,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010817,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0030496,GO:0030695,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042325,GO:0042327,GO:0042509,GO:0042531,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0045935,GO:0045937,GO:0046425,GO:0046427,GO:0046883,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050708,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051049,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051223,GO:0051235,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051457,GO:0051641,GO:0051651,GO:0051716,GO:0060255,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070727,GO:0072595,GO:0080090,GO:0090087,GO:0090276,GO:0098772,GO:0140110,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:1904892,GO:1904894,GO:2001141
Preferred nameARL2BP
DescriptionADP-ribosylation factor-like
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs2A9TM@1|root,2RYJD@2759|Eukaryota,39Y9Q@33154|Opisthokonta,3BMY5@33208|Metazoa,3D36I@33213|Bilateria,481TW@7711|Chordata,498SM@7742|Vertebrata,4A3AK@7898|Actinopterygii
Evalue1.63e-14
Seed ortholog8081.XP_008410915.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-15_003850.1
TranscriptId142085
TrackFilteredModels1
ProteinId141763
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141763gene_12315Tribonema minus UTEX_B_3156 geneContig_134 166580..166789 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12315_1exon_12315_1Tribonema minus UTEX_B_3156 exonContig_134 166580..166789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12315CDS_12315Tribonema minus UTEX_B_3156 CDSContig_134 166580..166789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141763Trimin1|141763|gw1.134.24.1Tribonema minus UTEX_B_3156 polypeptideContig_134 166580..166789 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12315 ID=mRNA_12315|Name=jgi.p|Trimin1|141763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_134:166580..166789- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGCTGATTGCCCCGTCTTGTGCCAATCAGGAAGTGGAGTTTGACCGCGT
GGTAGGCGCACTGCAGGAGATACTGCTGGATGACAACCTCAGTCGCAAGC
AGAGGGAGTTTCTCGATCGGCACTGCCATCAGTTTGAGGACAGCGCGGAG
AACAAGCTGGAGTACACGGGCATTTTCAACCAGTACACGGAAATGATAGG
TGGGTTTCTA
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protein sequence of jgi.p|Trimin1|141763

>Trimin1|141763|gw1.134.24.1 ID=Trimin1|141763|gw1.134.24.1|Name=jgi.p|Trimin1|141763|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
LLIAPSCANQEVEFDRVVGALQEILLDDNLSRKQREFLDRHCHQFEDSAE
NKLEYTGIFNQYTEMIGGFL
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mRNA from alignment at Contig_134:166580..166789-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12315 ID=mRNA_12315|Name=jgi.p|Trimin1|141763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_134:166580..166789- (Tribonema minus UTEX_B_3156 )
TTGCTGATTGCCCCGTCTTGTGCCAATCAGGAAGTGGAGTTTGACCGCGT
GGTAGGCGCACTGCAGGAGATACTGCTGGATGACAACCTCAGTCGCAAGC
AGAGGGAGTTTCTCGATCGGCACTGCCATCAGTTTGAGGACAGCGCGGAG
AACAAGCTGGAGTACACGGGCATTTTCAACCAGTACACGGAAATGATAGG
TGGGTTTCTA
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Coding sequence (CDS) from alignment at Contig_134:166580..166789-

>mRNA_12315 ID=mRNA_12315|Name=jgi.p|Trimin1|141763|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_134:166580..166789- (Tribonema minus UTEX_B_3156 )
TTGCTGATTGCCCCGTCTTGTGCCAATCAGGAAGTGGAGTTTGACCGCGT
GGTAGGCGCACTGCAGGAGATACTGCTGGATGACAACCTCAGTCGCAAGC
AGAGGGAGTTTCTCGATCGGCACTGCCATCAGTTTGAGGACAGCGCGGAG
AACAAGCTGGAGTACACGGGCATTTTCAACCAGTACACGGAAATGATAGG
TGGGTTTCTA
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