mRNA_12311 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352861
Unique NamemRNA_12311
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A835ZGD5_9STRA (Inhibitor of apoptosis-promoting Bax1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGD5_9STRA)

HSP 1 Score: 456 bits (1173), Expect = 1.240e-158
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 2
Query:   80 MASPATPEFSFPNWTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEKXXXXXXXXXXXXXXXXXXXSRKSEMSAFATTTRR 898
            MASPATPEFSFPNWTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEKXXXXXXXXXXXXXXXXXX SRKSEMSAFATTTRR
Sbjct:    1 MASPATPEFSFPNWTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEKXXXXXXXXXXXXXXXXXXSSRKSEMSAFATTTRR 273          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: D8LM79_ECTSI (Putative BAX inhibitor n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM79_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 3.220e-57
Identity = 107/218 (49.08%), Postives = 155/218 (71.10%), Query Frame = 2
Query:  143 SAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEK 796
            SA  K + +T +V++H+A+VY ALA T++A A G    L  + GGLL+ +   GA++ L++    +N+  R+G+LL  GLL+G+++G L+ + L ++P+I++ +   T  VF CFA  AL AKRR+YLYLGG+L SV S++ + SLLN+FMR   L  +QL+GGL  FCG+V+FDTQL++EKA  G RD A HA ELF+DFV IFVRI II++RN +K
Sbjct:   17 SALLKANDITLDVQRHLANVYAALAATVLACAFGAAADLWLHVGGLLTVVAGLGAMMWLAADQDKNNYPKRVGILLLFGLLKGLSLGPLIDMVLHVDPSILVTSLLATTTVFVCFAGTALFAKRRSYLYLGGLLSSVLSVLMVASLLNLFMRLEFLMSIQLYGGLAVFCGYVIFDTQLVVEKATLGDRDFAWHAAELFIDFVGIFVRICIILMRNKDK 234          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A1Y1HWI9_KLENI (BAX inhibitor 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWI9_KLENI)

HSP 1 Score: 178 bits (451), Expect = 6.440e-50
Identity = 107/235 (45.53%), Postives = 163/235 (69.36%), Query Frame = 2
Query:  107 SFPNWTQSRNDSSA--ATKN-SPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALS-SGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLN-MFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEK 796
            SF ++ + RN + +  A KN + L+  V+KH+  VYI L   ++ AA+GV  H + N GG L+ LG  G  I L+ + A  +    RM LL+G   LQG ++G LV V L+I+P+IVL+A  GT  VFACF+ AAL+A+RR+YLYLGGVL S  S+M ++ L + +F RS  +++L+L+ GL+ FC +V++DTQ+++E+AV G +D   HA++LFVDFV+IFVR+++I+ +N +K
Sbjct:    3 SFTSYFEGRNANVSFDALKNFNALSSGVQKHLQRVYITLTAAVLVAAVGVYAHTLLNLGGTLTHLGFIGLTIWLTMTPATPAQEGKRMSLLMGAAFLQGCSLGTLVQVILAIDPSIVLMAFLGTTAVFACFSGAALLAQRRSYLYLGGVLSSAVSVMMMLHLGSWLFGRSAAMFQLELYAGLLVFCAYVIYDTQVIVERAVRGEKDHIKHALDLFVDFVAIFVRLMVILAQNEQK 237          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A1V9ZSC7_9STRA (Bax inhibitor-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSC7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.720e-48
Identity = 103/220 (46.82%), Postives = 145/220 (65.91%), Query Frame = 2
Query:  137 DSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEK 796
            D  A  K + ++  V++H+  VY ALA T++ A +GV L  M +  GL S  GS G +I L           RMG+LL I    G+ IG LV+VAL ++ +IV+ A   TAV+F CF  +AL+ KRRTY+YL  V+ S T +M ++SL+N+F RS  LY   L+ GL+ FCG+V+FDTQ++IEKA  G  D   HA+ELF+DF++IFVR+L+I++RNAEK
Sbjct:   11 DLGALLKANDISIPVQQHLVRVYAALAATILVAGVGVALDAMLDLAGLTSTFGSLGLIIYLFF-VDKQLVAKRMGVLLTIAACMGINIGPLVSVALDVDASIVITAFLATAVIFLCFTGSALIEKRRTYMYLISVISSATLVMSMISLVNLFTRSIALYNAHLYMGLLVFCGYVLFDTQMIIEKASLGDLDFIGHALELFLDFINIFVRLLVILLRNAEK 229          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A5D6XIH1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIH1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 9.500e-47
Identity = 109/246 (44.31%), Postives = 149/246 (60.57%), Query Frame = 2
Query:   83 ASPATPEFSFPNWTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGG--------LLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEK 796
            AS ++P  S   W     D       S +  +V++H+A VY  L C ++ AA+     L    G         LL  LGS G  + L       N T R+G+LL +    G+++  LV +AL+++P IV+ A   T +VF CF  +A++A RR+YLYLG +L S  S M L++ LN+F RS MLY   L+GGLV FCG+VVFDTQ++IEKA  G RDV  HA+ELF+DFVSIFVRI+II+I+NA K
Sbjct:    8 ASSSSPSASAVTW-----DLKTMFNASGIPADVQQHLARVYSTLTCCVLTAALAAGACLALGGGASDGSSWLPLLCFLGSTGGSVWLQLEP-TYNHTKRVGILLAVAATTGVSLAALVDLALAVDPTIVITAFLMTTLVFVCFTGSAMLATRRSYLYLGAILSSALSTMALLNFLNIFFRSTMLYSANLYGGLVIFCGYVVFDTQMIIEKATMGDRDVLRHALELFLDFVSIFVRIMIILIKNAAK 247          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A6G0WLI3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLI3_9STRA)

HSP 1 Score: 167 bits (422), Expect = 8.130e-46
Identity = 94/226 (41.59%), Postives = 150/226 (66.37%), Query Frame = 2
Query:  116 NWTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAE 793
            ++T    D +A  K + ++  V+KH+A VY  LA T++ AA GV   +M +  G++S + SF  VIAL+      + T R+ +L+GI    G+ +G L+++AL ++P IV+ A  GTAVVFACF  +A++ KRR+Y YL   + S    + L+ L+N+F++S  +Y ++L+ GL+ FCG+V+ DTQ++IEKA  G RD   H +ELF+DFVS+FVR+L+I++  A+
Sbjct:    7 HFTTKSFDFAALLKTNDISASVQKHLAKVYTTLAITVLVAAAGVLADMMFDLVGIISSIASFALVIALAV-MDTRDVTKRLNVLMGIAFTTGVNLGPLISLALDVHPMIVVSAFLGTAVVFACFTGSAMLEKRRSYFYLYAAISSGVLCLTLLQLINIFVKSHAMYTMELYMGLLIFCGYVLVDTQMIIEKASLGDRDFVSHTLELFLDFVSLFVRVLLILLEKAK 231          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A024U0X3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0X3_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.400e-45
Identity = 92/219 (42.01%), Postives = 144/219 (65.75%), Query Frame = 2
Query:  137 DSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAE 793
            D +A  K + ++  V+KH+ +VY  LA TL+ AA+GV   +     G LSGLG  G +  L    + ++   R+ +L  I    G+  G LV++AL +NP +V  A  GT+V+FACF  +A++ KRR+Y +L   + S    + L+ L+N+F+RS  +Y ++L+ GL+ FCG+V+ DTQ++IEKA  G RD  LH+++LF+DFVSIFVRIL+++++NAE
Sbjct:   17 DFAALLKTNDISAAVQKHLVNVYTTLATTLLVAAIGVVADIKFTLAGALSGLGVIGLLFYLHF-IHINDTPKRLSVLYAIAFATGVNTGPLVSIALDVNPMLVATALFGTSVIFACFTGSAMLEKRRSYFFLYSAISSAILCLSLIQLVNIFVRSSAVYTVELYAGLLIFCGYVLLDTQMIIEKASLGDRDFVLHSLDLFLDFVSIFVRILVVLLKNAE 234          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A9NKD2_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NKD2_PICSI)

HSP 1 Score: 166 bits (421), Expect = 1.810e-45
Identity = 92/211 (43.60%), Postives = 147/211 (69.67%), Query Frame = 2
Query:  167 LTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVI-ALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLN-MFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAE 793
            ++  V+ H+  VY++L+C L+AAA+GV LHL+ N GGLL+GL   G+VI  LS   Y++N   R  LLL     +G T+G L+   + I+P+I++ A  GT++ FACF+AAA+ A+RR YL+LGG+L S  SI+  + L + +F  S  +Y  +++ GL+ F G+++FDTQ++IEKA  G  D   H+++LF+DFV++FVR+++IM +N++
Sbjct:   33 ISPAVQSHLKKVYLSLSCALVAAAIGVYLHLLLNIGGLLTGLACIGSVIWLLSVPTYSNNEGKRATLLLAAAAFKGATLGPLIDAVIDIDPSILVSAFVGTSLAFACFSAAAITARRREYLFLGGLLASGVSILMWLQLASAIFGGSSAIYTFEIYFGLLVFLGYIIFDTQMIIEKADHGDYDYLKHSLDLFIDFVAVFVRLVVIMAKNSD 243          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A485KSM5_9STRA (Aste57867_10871 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSM5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.920e-45
Identity = 95/220 (43.18%), Postives = 145/220 (65.91%), Query Frame = 2
Query:  137 DSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTA-RMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAE 793
            D +A  K + ++  V+KH+ +VY  LA T++ AA+GV   +  N  G LSG+G  G +  L       N T  R+ +LLGI    G+  G LV++AL +NP +V  A  GT+V+FACF  +AL+ KRR+Y +L   + S    + L+ L N+F+RS  LY ++L+ GL+ FCG+V+ DTQ++IEKA  G RD  LH+++LF+DFVSIFVR+L+++++NA+
Sbjct:   18 DFAALLKTNDISAPVQKHLVNVYSTLAATVLVAAVGVAADVAFNLAGALSGIGVIGLIFYLMF--IDRNATPKRLAVLLGIAFTMGVNTGPLVSLALDVNPWLVATAFFGTSVIFACFTGSALLEKRRSYFFLYSAMSSAVLCLSLVQLANIFVRSASLYSVELYMGLLLFCGYVLVDTQMIIEKASLGDRDFVLHSLDLFLDFVSIFVRLLVVLLKNAD 235          
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Match: A0A067CKP9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKP9_SAPPC)

HSP 1 Score: 164 bits (415), Expect = 9.030e-45
Identity = 96/226 (42.48%), Postives = 146/226 (64.60%), Query Frame = 2
Query:  119 WTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLIAAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIGLLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLYLGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLMIEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEK 796
            +T+S  +  A  K + ++  V++H+  VY ALA TL+AAA GV L +  +  G+ +   S G +  L           R+G+L+ I    G+ IG LVA AL+++PAIV+ A   T V+F CF  +AL+ KRR+Y+Y+   + S T +M L+SL+N+F RS  LY   L+ GL+ FC +V+FDTQ++IEKA  G  D  LHA++LF+DFV+IFVR+++I++RN E+
Sbjct:    7 FTRSAWNMEALFKANDISVPVQQHLVRVYTALAATLLAAAAGVGLDMAYDLAGITTVCASVGFIFGLFF-VEKHLVMKRLGMLMAIATCTGINIGPLVATALNVDPAIVVTACLATTVIFLCFTGSALIEKRRSYMYMMSFISSATMVMSLISLVNIFSRSIALYNAHLYMGLLVFCAYVLFDTQMIIEKATMGDMDFVLHALDLFLDFVNIFVRLVVILLRNKEQ 231          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352861 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGD5_9STRA1.240e-15899.63Inhibitor of apoptosis-promoting Bax1-domain-conta... [more]
D8LM79_ECTSI3.220e-5749.08Putative BAX inhibitor n=2 Tax=Ectocarpus TaxID=28... [more]
A0A1Y1HWI9_KLENI6.440e-5045.53BAX inhibitor 1 n=1 Tax=Klebsormidium nitens TaxID... [more]
A0A1V9ZSC7_9STRA1.720e-4846.82Bax inhibitor-like protein n=1 Tax=Achlya hypogyna... [more]
A0A5D6XIH1_9STRA9.500e-4744.31Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0WLI3_9STRA8.130e-4641.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024U0X3_9STRA1.400e-4542.01Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A9NKD2_PICSI1.810e-4543.60Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A485KSM5_9STRA2.920e-4543.18Aste57867_10871 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CKP9_SAPPC9.030e-4542.48Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:143549..145376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352861|estExt_Genemark1.C_Ctg_1340023
KEGG TC1.A.14.1.1,1.A.14.1.2,1.A.14.1.3,1.A.14.1.4
BRITEko00000,ko02000
KEGG koko:K21889
GOsGO:0000038,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0006082,GO:0006629,GO:0006631,GO:0006950,GO:0006983,GO:0006984,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009607,GO:0009628,GO:0009987,GO:0010035,GO:0010941,GO:0012505,GO:0019752,GO:0023052,GO:0031967,GO:0031975,GO:0032787,GO:0033554,GO:0034976,GO:0042221,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060548,GO:0065007,GO:0071216,GO:0071704,GO:1901700
Preferred nameBI-1
Descriptionendoribonuclease inhibitor activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1629@1|root,KOG1629@2759|Eukaryota
Evalue1.12e-59
Seed ortholog2880.D8LM79
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBax inhibitor 1-related
Ec32 orthologEc-01_005760.1
TranscriptId353183
TrackFilteredModels1
ProteinId352861
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352861gene_12311Tribonema minus UTEX_B_3156 geneContig_134 143549..145376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12311_2exon_12311_2Tribonema minus UTEX_B_3156 exonContig_134 143549..144467 -
exon_12311_1exon_12311_1Tribonema minus UTEX_B_3156 exonContig_134 145090..145376 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12311UTR3_12311Tribonema minus UTEX_B_3156 three_prime_UTRContig_134 143549..143853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12311CDS_12311Tribonema minus UTEX_B_3156 CDSContig_134 145090..145297 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12311UTR5_12311Tribonema minus UTEX_B_3156 five_prime_UTRContig_134 145298..145376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352861Trimin1|352861|estExt_Genemark1.C_Ctg_1340023Tribonema minus UTEX_B_3156 polypeptideContig_134 143854..145297 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12311 ID=mRNA_12311|Name=jgi.p|Trimin1|352861|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1206bp|location=Sequence derived from alignment at Contig_134:143549..145376- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCATACCTGCGAAGAGAAGACAGCTTTTCAGCAGTTATACGCAAGCAGC
CGGAGAGTTACAAGAGGCCAGTGAGATTCATGGCGTCCCCAGCTACGCCG
GAGTTTTCGTTTCCCAACTGGACCCAGTCCAGAAATGACTCTAGCGCAGC
AACCAAAAATTCCCCCTTGACAGAGGAGGTGCGGAAGCACGTGGCGGATG
TGTACATCGCCTTGGCGTGCACCCTCATTGCGGCAGCAATGGGCGTCACC
CTGCACCTGATGACAAATTGCGGTGGGCTCCTGTCAGGCCTGGGATCTTT
TGGCGCGGTGATCGCCCTTTCCAGCGGCGCGTACGCCAGCAACTTCACCG
CACGCATGGGGTTGCTCCTGGGCATCGGCCTGCTGCAGGGCATGACCATA
GGGGAGCTGGTGGCGGTGGCGCTCAGCATCAACCCGGCCATCGTCCTGCT
CGCCGCGGCGGGCACGGCGGTGGTGTTTGCGTGCTTTGCCGCAGCGGCGC
TCGTTGCGAAGCGCAGGACGTACCTGTACCTGGGCGGCGTGCTGGGGAGC
GTCACCTCCATCATGTGCCTCATGAGCCTGCTCAACATGTTCATGCGCTC
GCCGATGCTGTACGAGCTGCAGCTGTTTGGCGGCCTCGTCGCGTTCTGCG
GCTTTGTCGTCTTTGACACGCAGCTCATGATAGAGAAGGCGGTCGGCGGC
AGCCGCGACGTCGCGCTCCACGCCATGGAGCTCTTTGTGGACTTTGTGTC
GATATTCGTGCGCATCCTCATCATCATGATCAGGAACGCAGAGAAGAACC
AGAGGCGCGACAGCCGCAGGAACAGCGGCAGCGCCCACGGCAGCAGCAGC
AGCAGCAGGAAGTCTGAGATGTCGGCGTTTGCCACTACCACCCGGCGGTA
GTTGCTTTGACTGCAAGTGCTGGCGGCTTGCATCTGCATTCTACACACTC
CAGCGTTGCGGGAGTTGCAGGAGGGGGCTGCGGCGTGCAGCAGCACCCAA
TGTGTAAGTCAAAACGACAGCCGCAGCCCTACACAGAAGCAGCATGAGAA
GATGTTTTCGCGGTCGTGTCAGTAGCGCCATGCATCACATGCCAACTGTG
AACTCACAGCCTGACAAGGCACAGTCTCGCAGACTTAGCGCAGACTTTGC
AGGACACCTGACTGGTGCGTGGCGCACCTTTTTAAATAGAGGATATGTAC
ACGCTA
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protein sequence of jgi.p|Trimin1|352861

>Trimin1|352861|estExt_Genemark1.C_Ctg_1340023 ID=Trimin1|352861|estExt_Genemark1.C_Ctg_1340023|Name=jgi.p|Trimin1|352861|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MASPATPEFSFPNWTQSRNDSSAATKNSPLTEEVRKHVADVYIALACTLI
AAAMGVTLHLMTNCGGLLSGLGSFGAVIALSSGAYASNFTARMGLLLGIG
LLQGMTIGELVAVALSINPAIVLLAAAGTAVVFACFAAAALVAKRRTYLY
LGGVLGSVTSIMCLMSLLNMFMRSPMLYELQLFGGLVAFCGFVVFDTQLM
IEKAVGGSRDVALHAMELFVDFVSIFVRILIIMIRNAEKNQRRDSRRNSG
SAHGSSSSSRKSEMSAFATTTRR*
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mRNA from alignment at Contig_134:143549..145376-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12311 ID=mRNA_12311|Name=jgi.p|Trimin1|352861|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1828bp|location=Sequence derived from alignment at Contig_134:143549..145376- (Tribonema minus UTEX_B_3156 )
ACCATACCTGCGAAGAGAAGACAGCTTTTCAGCAGTTATACGCAAGCAGC CGGAGAGTTACAAGAGGCCAGTGAGATTCATGGCGTCCCCAGCTACGCCG GAGTTTTCGTTTCCCAACTGGACCCAGTCCAGAAATGACTCTAGCGCAGC AACCAAAAATTCCCCCTTGACAGAGGAGGTGCGGAAGCACGTGGCGGATG TGTACATCGCCTTGGCGTGCACCCTCATTGCGGCAGCAATGGGCGTCACC CTGCACCTGATGACAAATTGCGGTGGGCTCCTGTCAGGTTTGTGCAAATC ATGTTCCGATTTGCTCGAGCAGGTTACGGTGCACGTTAACTTGCTGTCGC AGCGCTTGTTGCTACCTAGTCGTTTGTCCAGCTGGACTTTCTCAGCGAGC AATCCCGAGGTAGGAGGGTCTGCGCCGCAGCCTGAGGAATTGATGACCGC GTGGCAGTAGACCGATGCGCTGCACTGCGTTGTAATCGCCAAGACCAGAT GCTTACATGCTTGTTCTCCCGTTTACACTTAACACGATTGCATGGGCTGG TAGAATCTTGAGGCCACCAGCATGTTGGGTCATCTTTTCAATTGTCCCTT TTCAGTACATGTGCTGGAGCCAGCTGTAGTGCGCGCGTGTAGCTTCATGT GCGGGTTTCACTGAACCTTATTGTCAGCGCAGTGTTCAAAGTTTGCAGGC TGTTTAATTGCACCCTGCAACAAAAACAGCTCGGAGGTTGCTGCCAGTCA ATGAAGGCTGGATGGCGCCTGCCTCGCTACATGCACGACACATCCTAGCC ACACGCCCATGAGCATTAGGTGCGGCATGTTTTCAATGAAGTGGTTCACA GCGCACAATGCGGAGCCTCACCGACCCCTTTCACATACTGCATTCGCTCT CATTTCCAGGCCTGGGATCTTTTGGCGCGGTGATCGCCCTTTCCAGCGGC GCGTACGCCAGCAACTTCACCGCACGCATGGGGTTGCTCCTGGGCATCGG CCTGCTGCAGGGCATGACCATAGGGGAGCTGGTGGCGGTGGCGCTCAGCA TCAACCCGGCCATCGTCCTGCTCGCCGCGGCGGGCACGGCGGTGGTGTTT GCGTGCTTTGCCGCAGCGGCGCTCGTTGCGAAGCGCAGGACGTACCTGTA CCTGGGCGGCGTGCTGGGGAGCGTCACCTCCATCATGTGCCTCATGAGCC TGCTCAACATGTTCATGCGCTCGCCGATGCTGTACGAGCTGCAGCTGTTT GGCGGCCTCGTCGCGTTCTGCGGCTTTGTCGTCTTTGACACGCAGCTCAT GATAGAGAAGGCGGTCGGCGGCAGCCGCGACGTCGCGCTCCACGCCATGG AGCTCTTTGTGGACTTTGTGTCGATATTCGTGCGCATCCTCATCATCATG ATCAGGAACGCAGAGAAGAACCAGAGGCGCGACAGCCGCAGGAACAGCGG CAGCGCCCACGGCAGCAGCAGCAGCAGCAGGAAGTCTGAGATGTCGGCGT TTGCCACTACCACCCGGCGGTAGTTGCTTTGACTGCAAGTGCTGGCGGCT TGCATCTGCATTCTACACACTCCAGCGTTGCGGGAGTTGCAGGAGGGGGC TGCGGCGTGCAGCAGCACCCAATGTGTAAGTCAAAACGACAGCCGCAGCC CTACACAGAAGCAGCATGAGAAGATGTTTTCGCGGTCGTGTCAGTAGCGC CATGCATCACATGCCAACTGTGAACTCACAGCCTGACAAGGCACAGTCTC GCAGACTTAGCGCAGACTTTGCAGGACACCTGACTGGTGCGTGGCGCACC TTTTTAAATAGAGGATATGTACACGCTA
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Coding sequence (CDS) from alignment at Contig_134:143549..145376-

>mRNA_12311 ID=mRNA_12311|Name=jgi.p|Trimin1|352861|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_134:143549..145376- (Tribonema minus UTEX_B_3156 )
ATGGCGTCCCCAGCTACGCCGGAGTTTTCGTTTCCCAACTGGACCCAGTC
CAGAAATGACTCTAGCGCAGCAACCAAAAATTCCCCCTTGACAGAGGAGG
TGCGGAAGCACGTGGCGGATGTGTACATCGCCTTGGCGTGCACCCTCATT
GCGGCAGCAATGGGCGTCACCCTGCACCTGATGACAAATTGCGGTGGGCT
CCTGTCAGGCCTGGGATCTTTTGGCGCGGTGATCGCCCTTTCCAGCGGCG
CGTACGCCAGCAACTTCACCGCACGCATGGGGTTGCTCCTGGGCATCGGC
CTGCTGCAGGGCATGACCATAGGGGAGCTGGTGGCGGTGGCGCTCAGCAT
CAACCCGGCCATCGTCCTGCTCGCCGCGGCGGGCACGGCGGTGGTGTTTG
CGTGCTTTGCCGCAGCGGCGCTCGTTGCGAAGCGCAGGACGTACCTGTAC
CTGGGCGGCGTGCTGGGGAGCGTCACCTCCATCATGTGCCTCATGAGCCT
GCTCAACATGTTCATGCGCTCGCCGATGCTGTACGAGCTGCAGCTGTTTG
GCGGCCTCGTCGCGTTCTGCGGCTTTGTCGTCTTTGACACGCAGCTCATG
ATAGAGAAGGCGGTCGGCGGCAGCCGCGACGTCGCGCTCCACGCCATGGA
GCTCTTTGTGGACTTTGTGTCGATATTCGTGCGCATCCTCATCATCATGA
TCAGGAACGCAGAGAAGAACCAGAGGCGCGACAGCCGCAGGAACAGCGGC
AGCGCCCACGGCAGCAGCAGCAGCAGCAGGAAGTCTGAGATGTCGGCGTT
TGCCACTACCACCCGGCGGTAG
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