mRNA_12267 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A836C6I6_9STRA (Heat shock protein Hsp33 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6I6_9STRA) HSP 1 Score: 527 bits (1358), Expect = 3.500e-188 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 1 Query: 1 MDAQQEVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSSVAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLEPGGGGGGSGAR 888 MDAQQEVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSSVAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLEPGGGGGGSGAR Sbjct: 1 MDAQQEVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSSVAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLEPGGGGGGSGAR 296
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A3A0FZH5_9PROT (33 kDa chaperonin n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0FZH5_9PROT) HSP 1 Score: 138 bits (347), Expect = 2.960e-35 Identity = 111/287 (38.68%), Postives = 147/287 (51.22%), Query Frame = 1 Query: 1 MDAQQEVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPS----SVAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAM 849 + A V VR V +R V A R + +P AT A+G AL+ +LL +D GE++Q+ VRGDGPLG+I A G RG V+ P V +G GLL V RN+PS +PYN VPL G IA L HY++ SEQ+P+ A A V + A + A GYLV+ LPGA DA L A L Q ++ A A A + R P FRC+CS ER A+ LG +E+R +A+ LEVRCEFC +Y + P + A+ Sbjct: 17 ISADGSVSVRVVVATRLVREAARRHQTAPTATVALGRALMGTLLLATEAQD-GERVQVQVRGDGPLGTITVTASSAGDVRGYVARPDTDLPLRRERFDVPGAVGLGLLSVERNHPSWK-QPYNGIVPL-VSGEIATDLAHYLLESEQKPS--AVALGVYVGAGGE---VQGAGGYLVQSLPGADDAALRVLEQRVAALV-QPSALVREGAGATALLDRLVGGLGAQPVQRVRPRFRCSCSMERVRRALVFLGDDEIRDILAKNETLEVRCEFCAEMYYVPPDRVAAL 294
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A6T6L864_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6L864_9RHOD) HSP 1 Score: 121 bits (303), Expect = 6.870e-29 Identity = 94/287 (32.75%), Postives = 148/287 (51.57%), Query Frame = 1 Query: 16 EVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSS-----VAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGAS-DATRAALAAAHA--MLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRE-LEAM 849 EV R V+ + V+ A+ Q+ SP+A+ A+G A++C +LL G K EGE +QL +RGDGPL + +AI++ +G RG V + PP+S V K +G+G+L VVRN+P PY + G +A + Y+ SEQ P+ A V ++ A G+LV LPGA+ D+ R + M +L + +SA D ++ + P + C+C ER V +LG +++ +AE ++E CEFC Y ++P E +EA+ Sbjct: 9 EVSCRVVTGTGLVNAAANVQRTSPVASAALGRAMICGLLLSAG-KKEGETVQLELRGDGPLKTTVAISNGRGEVRGYVGDPSVVLPPNSEGHLDVGKAVGKGILAVVRNHPMWK-NPYTGLTTI-VSGEVAEDVASYLADSEQTPSALGAGVLVDKKGE-----VVAAGGFLVSMLPGATEDSIRTVEQNVKSLKMTPTELIRSGMSATDIVGKLMKDLDPLE---VAESYPKYYCSCGRERVRRTVVLLGRKDIEDLIAEQGHVEATCEFCKRCYRLSPEEAMEAL 284
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: UPI001F17DDE8 (Hsp33 family molecular chaperone HslO n=1 Tax=Oscillibacter valericigenes TaxID=351091 RepID=UPI001F17DDE8) HSP 1 Score: 119 bits (298), Expect = 4.240e-28 Identity = 95/284 (33.45%), Postives = 139/284 (48.94%), Query Frame = 1 Query: 25 VRTVSLSRAVSTVADRQ--KLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPP-----PSSVAKGIG-EGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAML 852 V+ V++S T RQ +P+AT A+G L A +LG LK +G + L ++GDGPLG+I+A++D G RG+V P V +G EG+L V+R+ + PY SV L GG IA L Y V SEQ P V D + +L A GYL++ LPGA + + + M A +T+ + +D +L ++ +RC CS ER A+ LG EE+RS + E + E+ C FC +V T +LE +L Sbjct: 15 VKAVAVSTRDLTERARQIHHTTPVATAALGRTLAAASMLGNALKGDGASVTLQIKGDGPLGTILAVSDNAGNVRGKVDDPTVDLPLRPDGKLDVGAAVGHEGMLTVIRDLNMKD--PYVGSVSL-LGGEIAEDLAAYFVESEQIPTACGLGVLVDRDRS-----VLTAGGYLIQLLPGAGEEIVSRVEGG-IMAAGSVTALLKADSDPESLLRRVMPDFELEILEKSPIEYRCYCSRERMEKALISLGPEEMRSLIDEQGSAEMTCRFCDSVQKFTREDLEGLL 289
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A2E9GU54_9DELT (33 kDa chaperonin n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9GU54_9DELT) HSP 1 Score: 115 bits (289), Expect = 7.530e-27 Identity = 99/278 (35.61%), Postives = 134/278 (48.20%), Query Frame = 1 Query: 19 VVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSSVAKG----IGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPREL 840 V VR ++ + V A+R SP A+G AL+ A+LL +D GE++QL +RGDGPLG+++ AD G RG + + P G IG G L V RN+PS RPY VPL G IA L Y++ SEQ+P+ A A V L+ + A GYLV+ LPGA DA A A + + +D + +P F C C+ +R A +LG EE+R + LEVRCEFC VY + EL Sbjct: 15 VSVRVLAATELVREAAERHGASPTGAVALGRALMGALLLATEGQD-GERVQLHIRGDGPLGALLVTADAAGSARGYARNPGTNAPLHGAELGLREAIGLGELTVERNHPSWK-RPYAGIVPL-VSGEIAQDLARYLLESEQKPS--AVALGVYLEPGGQ---VAAAGGYLVQKLPGA-DAGVIADFEARVEQTLHPSELLHAGSDVDEILEQLLGDVPRHRVDHITPRFHCPCTMDRVLRAALLLGREEIREIIERDEELEVRCEFCSEVYRLPANEL 283
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A7V1IK52_9DELT (33 kDa chaperonin n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V1IK52_9DELT) HSP 1 Score: 116 bits (290), Expect = 9.020e-27 Identity = 101/299 (33.78%), Postives = 142/299 (47.49%), Query Frame = 1 Query: 19 VVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLG-GGLKDEG-----EQLQLMVRGDGPLGSIIAIADRQGICRGRVSH---------GAPSPPPSSVAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLR---AQGYLVEFLPGASDATRAALAAAHAMLAA--QLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLE 855 + V+T+ S V+ + +P A A+G A++ AVL+ G DE E +QL RGDGPLG++ AIAD + R V H G P +A+ IG+G L+VVR+ P R PY +VPL G IA L Y+ SEQ P+ + S P +R A G+LV+ LP ASDA + + A A L + +L PV DA + +P F C CSH+R+ + +L EL V + E+ C+FCG Y I P E+ +LE Sbjct: 29 IAVKTLIASELVAEALSLRDHAPTAAHALGRAMMGAVLIAVGSAADEADEANVESVQLQFRGDGPLGTLTAIADSRARVRATVQHPDVELRLADGTPD-----IARAIGQGPLNVVRHRP-RWRTPYTGTVPL-VSGEIAGDLTLYLTESEQTPSS--------MGLGVSLGPAMRDVAACGFLVQALPDASDADLSRVEANIAALPSLSRLLEDPV---DANALVDRLLEGLGSRERHAMTPRFDCPCSHDRALRTLSLLEEGELAELVENEEDQEIVCDFCGRAYQIQPPEMRKLLE 309
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A5J4YHG0_PORPP (33 kDa chaperonin n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHG0_PORPP) HSP 1 Score: 116 bits (291), Expect = 3.130e-26 Identity = 98/280 (35.00%), Postives = 138/280 (49.29%), Query Frame = 1 Query: 31 TVSLSRAVSTVADRQKL---SPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSS-----VAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEA 846 TV RA VA L SP+A+ A+G ALVCA+LL G K E L L R GP+ SI+A+++ QG RG V + PP+ V K +GEG+L VRN+P PY VP+ +G +A + Y++ SEQ P++ A V + S A G+LVE LP A + T A L A L T S L+ ++P ++C+CS +R V ++ +EL+S + E +E CEFCG Y +T E+EA Sbjct: 136 TVKAVRATGLVAGSCSLFQTSPVASAALGRALVCALLLSCGKKSN-ETLNLEFRCTGPIRSIVAVSNGQGEVRGYVGNPHVVLPPNKDGKLDVGKAVGEGILACVRNHPFWK-NPYTGLVPIESG-EVAEDVAKYLLDSEQTPSVLGAGVYVNKEGVVS-----AAGGFLVELLPEADEQTIALLERNVAELGMSPTELIRSGKSPADIVEMLMRDLNPLQLAESTPRYKCSCSTDRVKRTVALIHEDELKSILEEQGKVEATCEFCGRRYNLT--EVEA 405
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A1X6PDD4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDD4_PORUM) HSP 1 Score: 114 bits (284), Expect = 4.390e-26 Identity = 98/296 (33.11%), Postives = 135/296 (45.61%), Query Frame = 1 Query: 1 MDAQQEVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSS-----VAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLEPGGGGG 873 M A EV VR VS + V+ + SP+A+ A G +L+ +LL G K E QL R DGPL I+ +A+ G RG V PP + V +G G+L VVRN P +P+ + G + + Y+ +SEQ P+ V D + A G+LV+ LPGAS+A+ +A + A V A TL+ A P F C CS ER VR+LG ++ VAE ++ CEFCG Y +T E+ AM GGG G Sbjct: 1 MSANGEVTVRAVSATGLVAASCHLHRTSPVASAAFGRSLLSGLLLAAGKKGA-ETTQLEFRCDGPLRGIMIVANGVGEVRGYVGEPRVVLPPKADGSLNVGAAVGRGILAVVRNAPHYK-KPFTGLTSI-VTGEVGDEIAEYLASSEQTPSALGVGVGVGADGRVT-----SASGFLVQILPGASEAS---VATVERNVKALGERGVVGRAADEMVGVLMGGLDPLTLVETA-PRFTCHCSVERVKRTVRLLGRKDCEELVAERGGVDATCEFCGRSYGLTGDEVLAMFAGGGGDG 284
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A7C2E620_9FIRM (33 kDa chaperonin n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2E620_9FIRM) HSP 1 Score: 113 bits (283), Expect = 5.660e-26 Identity = 90/270 (33.33%), Postives = 128/270 (47.41%), Query Frame = 1 Query: 70 RQKLSPIATQAVGEALVCAVLLGGGLKDEGEQLQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPS-----SVAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALA--AAHAMLAAQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLEP 858 R + +P AT A+G L V+LG GLKD G++L + V GDGPLG I++ + +G RG V + P + +V +G G LHV ++ R PY+ S PL G I + HY+V SEQ PA+ A V D + A G++++ LPGA +L +H L SAA+ + LL AFRC CS +R G + +G EE+ V E EV C FCG Y + ++E + P Sbjct: 32 RHRTAPTATAALGRTLAATVMLGAGLKD-GQRLTVRVLGDGPLGGIVSEGNGRGEVRGYVQNPQVDLPLTPRRKLNVGAAVGRGTLHVTKDVGLR--YPYHGSAPL-VSGEIGEDVAHYLVVSEQVPAVVALGVLVAPDQSVE-----AAGGFILQVLPGAPARIPRSLEERVSHLPGVTHLVRRGGSAAE---LLSEALGDLDSRLLEEVPVAFRCGCSRQRVEGVLVAMGREEVSRLVEEEGQAEVICRFCGDRYVLDAADVERLFTP 289
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Match: A0A7S0M650_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M650_9CRYP) HSP 1 Score: 115 bits (288), Expect = 7.090e-26 Identity = 99/305 (32.46%), Postives = 143/305 (46.89%), Query Frame = 1 Query: 16 EVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKDEGEQ--------LQLMVRGDGPLGSIIAIADRQGICRGRVSHGAPSPPPSS-----VAKGIGEGLLHVVRNNPSRGGRPYNASVPLPAGGSIAAALEHYMVASEQRPALFAAACTVPLDAAASPPPLLRAQGYLVEFLPGASDATRAALAAAHAMLA---AQLTSTPVSAADAXXXXXXXXXXXXATLLSRASPAFRCTCSHERSAGAVRMLGTEELRSAVAEARNLEVRCEFCGAVYAITPRELEAMLEPGGGGGGSG 882 EV R V+ + V A Q SP+A+ A+G A+VCA+LL G K EGE +Q+ +RGDGPL + A+AD + RG V+ PP++ VA+ +G+G L VVRNN +PY + G I + HY+ SEQ P+ A V A ++ A G+LV+ LPGA++ T + + A L +L + +A D + P F C CS E+ V ++ E+ S + E LEV+CEFC Y++ REL E G G Sbjct: 103 EVSFRAVTATGLVKGAAAMQGTSPVASAALGRAMVCALLLSQG-KKEGEMYGEAGRETVQIDIRGDGPLKQVFALADGRAEVRGYVAEPLVYLPPNARGKLDVARAVGKGFLTVVRNN-VLWKQPYTGITQI-VSGEIPEDIAHYLTESEQTPSAIGAGVLV----ATETEQVVAAGGWLVQMLPGATEETVSMVERNIASLQKTPTELVRSGKTALDICSLLSDGLREQELIPTYQVRPRFTCKCSMEKVYRTVALMPRGEMDSILQEKGKLEVKCEFCKRCYSLGGRELTEAYESASASSGPG 400 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173014 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12267 ID=mRNA_12267|Name=jgi.p|Trimin1|173014|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_99:366012..366902+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGATGCGCAGCAGGAGGTCGTTGTCCGCACAGTGAGCCTGTCTCGAGCback to top protein sequence of jgi.p|Trimin1|173014 >Trimin1|173014|e_gw1.99.93.1 ID=Trimin1|173014|e_gw1.99.93.1|Name=jgi.p|Trimin1|173014|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp MDAQQEVVVRTVSLSRAVSTVADRQKLSPIATQAVGEALVCAVLLGGGLKback to top mRNA from alignment at Contig_99:366012..366902+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12267 ID=mRNA_12267|Name=jgi.p|Trimin1|173014|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_99:366012..366902+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_99:366012..366902+ >mRNA_12267 ID=mRNA_12267|Name=jgi.p|Trimin1|173014|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=891bp|location=Sequence derived from alignment at Contig_99:366012..366902+ (Tribonema minus UTEX_B_3156 )back to top |