mRNA_12257 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A835YGT5_9STRA (Cell wall surface anchor family protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGT5_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.300e-69 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
Query: 1 QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDXXXXXXXXXXXXXXVCRAA 339
QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDXXXXXXXXXXXXXXVCRAA
Sbjct: 1 QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDXXXXXXXXXXXXXXVCRAA 113
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: D8LAX7_ECTSI (Cell wall surface anchor family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX7_ECTSI) HSP 1 Score: 120 bits (302), Expect = 4.110e-33 Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGT-------SSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSN 279
W + +G+AG WCGRRKHQVVSHRG L+LLGG+ G + NL+DVW+S DGA W ++ APWSGRDGH AL H G+I++MGGTQD R+N
Sbjct: 6 WAVVSRNGEAG-WCGRRKHQVVSHRGSLFLLGGFTSGGVLGTAGAGRNANLHDVWKSTDGAAWVRLLEHAPWSGRDGHAALTHNGAIFLMGGTQDPRNN 103
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE) HSP 1 Score: 119 bits (298), Expect = 6.060e-29 Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGT-------SSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSN 279
W + +G+AG WCGRRKHQVVSHRG L+LLGG+ G + NL+DVW+S +GA W ++ APWSGRDGH AL H G+I++MGGTQD R+N
Sbjct: 6 WAVVSRNGEAG-WCGRRKHQVVSHRGSLFLLGGFTSGGVLGTGGAGRNANLHDVWKSTEGAAWVRLLEHAPWSGRDGHAALTHNGAIFLMGGTQDPRNN 103
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A7V2MEW9_9BACT (Galactose oxidase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2MEW9_9BACT) HSP 1 Score: 65.9 bits (159), Expect = 2.750e-10 Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGG--YAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
W Q+ A +AG W R HQ V H+G +++ GG Y E + NDVW S+DGA+W+++T APW+ R A + G I+++GG
Sbjct: 180 WTQITA--RAG-WAPRAYHQAVVHQGKIWVFGGGNYVPEYAA---FNDVWCSEDGANWTEVTRSAPWAPRIWFSAAVYRGHIWVLGG 260
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A142WWW9_9PLAN (Kelch motif protein n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WWW9_9PLAN) HSP 1 Score: 65.1 bits (157), Expect = 4.900e-10 Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 40 WCGRRKHQVVSHRGHLYLLGG--YAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
W R HQVVS G LYLLGG Y E + NDVW S+DG W+Q+T +APWS R A+ + ++++GG
Sbjct: 201 WTPRAYHQVVSLNGKLYLLGGGNYLPEYQAR---NDVWSSEDGVTWTQLTDKAPWSPRLWFSAVAYRDRLWVLGG 272
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A1V9ZBI5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBI5_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.210e-9 Identity = 36/102 (35.29%), Postives = 44/102 (43.14%), Query Frame = 1
Query: 40 WCGRRKHQVVSHRGHLYLLGGY---------------------AMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSND 282
W R H VV + G LYL GGY A G +NDVW S+DG W Q+TP A WS R H + G ++I+GG S D
Sbjct: 290 WSPREYHTVVEYMGSLYLAGGYTSIQSNLCGPEIDKRPPGNEYACGGGYRKYMNDVWTSNDGQKWVQLTPNAAWSARGEHAMVSWNGLLWIIGGRTRNMSTD 391
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A1Q9EZT7_SYMMI (Ras guanine nucleotide exchange factor F n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EZT7_SYMMI) HSP 1 Score: 63.5 bits (153), Expect = 2.190e-9 Identity = 32/85 (37.65%), Postives = 41/85 (48.24%), Query Frame = 1
Query: 4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
W QL AH +W R H ++ +G L L+ G S+ NDVW S DGA W Q+T APW R +YI+GG
Sbjct: 71 WKQLTAHA---AWEARSGHAAIALKGRLLLMAGENSPIGKSVYFNDVWASQDGAAWVQVTEHAPWCERTSPAFAASDSKVYILGG 152
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A812VXS0_9DINO (Ivns1abp protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VXS0_9DINO) HSP 1 Score: 62.4 bits (150), Expect = 5.240e-9 Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 1
Query: 4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
W QL AH +W R H ++ +G L ++ G S+ NDVW S DGA W Q+T APW R +YI+GG
Sbjct: 255 WRQLTAHA---AWEARSGHVAIALKGRLLVMAGENSPIGESVFFNDVWASQDGAAWVQVTEHAPWCERTSPAVAASDSKVYILGG 336
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A1V5ZS09_9BACT (Kelch motif protein n=1 Tax=Candidatus Latescibacteria bacterium ADurb.Bin168 TaxID=1852850 RepID=A0A1V5ZS09_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 7.810e-9 Identity = 30/79 (37.97%), Postives = 39/79 (49.37%), Query Frame = 1
Query: 31 AGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQD 267
A W R H SH G L+++GG A NLND+W S DG HW+ P A W+ R H ++I+GG D
Sbjct: 62 AAPWQPRWNHVTFSHGGKLWVIGGLASVDPLQ-NLNDIWSSPDGIHWTLEVPEASWTARHVWAWTSHQRRMFIIGGATD 139
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A7Y2BEV6_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BEV6_9DELT) HSP 1 Score: 61.2 bits (147), Expect = 1.150e-8 Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 1
Query: 4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQ 264
W ++ G W R Q V+ +Y++GG G S NDVW S+DG W+Q+T A W+ R G A+ IYI GG+Q
Sbjct: 95 WTRILESDAPGHWPPRAYFQAVTKGSSMYVIGGQDF-GIMSNFYNDVWTSEDGVQWTQLTADAGWTPRAGLRAVVFNDEIYIFGGSQ 180 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12257 ID=mRNA_12257|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_99:277399..277737+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAATGGATCCAGCTGCGCGCTCACGGCCAGGCAGGCAGCTGGTGCGGCCGback to top protein sequence of jgi.p|Trimin1|152997 >Trimin1|152997|gw1.99.118.1 ID=Trimin1|152997|gw1.99.118.1|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRback to top mRNA from alignment at Contig_99:277399..277737+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12257 ID=mRNA_12257|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_99:277399..277737+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_99:277399..277737+ >mRNA_12257 ID=mRNA_12257|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_99:277399..277737+ (Tribonema minus UTEX_B_3156 )back to top |