mRNA_12257 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152997
Unique NamemRNA_12257
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A835YGT5_9STRA (Cell wall surface anchor family protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGT5_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.300e-69
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
Query:    1 QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDXXXXXXXXXXXXXXVCRAA 339
            QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDXXXXXXXXXXXXXXVCRAA
Sbjct:    1 QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDXXXXXXXXXXXXXXVCRAA 113          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: D8LAX7_ECTSI (Cell wall surface anchor family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.110e-33
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGT-------SSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSN 279
            W  +  +G+AG WCGRRKHQVVSHRG L+LLGG+   G         + NL+DVW+S DGA W ++   APWSGRDGH AL H G+I++MGGTQD R+N
Sbjct:    6 WAVVSRNGEAG-WCGRRKHQVVSHRGSLFLLGGFTSGGVLGTAGAGRNANLHDVWKSTDGAAWVRLLEHAPWSGRDGHAALTHNGAIFLMGGTQDPRNN 103          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 6.060e-29
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGT-------SSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSN 279
            W  +  +G+AG WCGRRKHQVVSHRG L+LLGG+   G         + NL+DVW+S +GA W ++   APWSGRDGH AL H G+I++MGGTQD R+N
Sbjct:    6 WAVVSRNGEAG-WCGRRKHQVVSHRGSLFLLGGFTSGGVLGTGGAGRNANLHDVWKSTEGAAWVRLLEHAPWSGRDGHAALTHNGAIFLMGGTQDPRNN 103          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A7V2MEW9_9BACT (Galactose oxidase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2MEW9_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 2.750e-10
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGG--YAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
            W Q+ A  +AG W  R  HQ V H+G +++ GG  Y  E  +    NDVW S+DGA+W+++T  APW+ R    A  + G I+++GG
Sbjct:  180 WTQITA--RAG-WAPRAYHQAVVHQGKIWVFGGGNYVPEYAA---FNDVWCSEDGANWTEVTRSAPWAPRIWFSAAVYRGHIWVLGG 260          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A142WWW9_9PLAN (Kelch motif protein n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WWW9_9PLAN)

HSP 1 Score: 65.1 bits (157), Expect = 4.900e-10
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   40 WCGRRKHQVVSHRGHLYLLGG--YAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
            W  R  HQVVS  G LYLLGG  Y  E  +    NDVW S+DG  W+Q+T +APWS R    A+ +   ++++GG
Sbjct:  201 WTPRAYHQVVSLNGKLYLLGGGNYLPEYQAR---NDVWSSEDGVTWTQLTDKAPWSPRLWFSAVAYRDRLWVLGG 272          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A1V9ZBI5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBI5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.210e-9
Identity = 36/102 (35.29%), Postives = 44/102 (43.14%), Query Frame = 1
Query:   40 WCGRRKHQVVSHRGHLYLLGGY---------------------AMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSND 282
            W  R  H VV + G LYL GGY                     A  G     +NDVW S+DG  W Q+TP A WS R  H  +   G ++I+GG     S D
Sbjct:  290 WSPREYHTVVEYMGSLYLAGGYTSIQSNLCGPEIDKRPPGNEYACGGGYRKYMNDVWTSNDGQKWVQLTPNAAWSARGEHAMVSWNGLLWIIGGRTRNMSTD 391          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A1Q9EZT7_SYMMI (Ras guanine nucleotide exchange factor F n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EZT7_SYMMI)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-9
Identity = 32/85 (37.65%), Postives = 41/85 (48.24%), Query Frame = 1
Query:    4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
            W QL AH    +W  R  H  ++ +G L L+ G       S+  NDVW S DGA W Q+T  APW  R           +YI+GG
Sbjct:   71 WKQLTAHA---AWEARSGHAAIALKGRLLLMAGENSPIGKSVYFNDVWASQDGAAWVQVTEHAPWCERTSPAFAASDSKVYILGG 152          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A812VXS0_9DINO (Ivns1abp protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VXS0_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 5.240e-9
Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 1
Query:    4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGG 258
            W QL AH    +W  R  H  ++ +G L ++ G       S+  NDVW S DGA W Q+T  APW  R           +YI+GG
Sbjct:  255 WRQLTAHA---AWEARSGHVAIALKGRLLVMAGENSPIGESVFFNDVWASQDGAAWVQVTEHAPWCERTSPAVAASDSKVYILGG 336          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A1V5ZS09_9BACT (Kelch motif protein n=1 Tax=Candidatus Latescibacteria bacterium ADurb.Bin168 TaxID=1852850 RepID=A0A1V5ZS09_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-9
Identity = 30/79 (37.97%), Postives = 39/79 (49.37%), Query Frame = 1
Query:   31 AGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQD 267
            A  W  R  H   SH G L+++GG A       NLND+W S DG HW+   P A W+ R       H   ++I+GG  D
Sbjct:   62 AAPWQPRWNHVTFSHGGKLWVIGGLASVDPLQ-NLNDIWSSPDGIHWTLEVPEASWTARHVWAWTSHQRRMFIIGGATD 139          
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Match: A0A7Y2BEV6_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BEV6_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 1.150e-8
Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 1
Query:    4 WIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWRSDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQ 264
            W ++      G W  R   Q V+    +Y++GG    G  S   NDVW S+DG  W+Q+T  A W+ R G  A+     IYI GG+Q
Sbjct:   95 WTRILESDAPGHWPPRAYFQAVTKGSSMYVIGGQDF-GIMSNFYNDVWTSEDGVQWTQLTADAGWTPRAGLRAVVFNDEIYIFGGSQ 180          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152997 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGT5_9STRA2.300e-69100.00Cell wall surface anchor family protein (Fragment)... [more]
D8LAX7_ECTSI4.110e-3356.57Cell wall surface anchor family protein n=1 Tax=Ec... [more]
A0A6H5JNX3_9PHAE6.060e-2955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V2MEW9_9BACT2.750e-1040.23Galactose oxidase n=1 Tax=Bryobacteraceae bacteriu... [more]
A0A142WWW9_9PLAN4.900e-1045.33Kelch motif protein n=1 Tax=Planctomyces sp. SH-PL... [more]
A0A1V9ZBI5_9STRA1.210e-935.29Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1Q9EZT7_SYMMI2.190e-937.65Ras guanine nucleotide exchange factor F n=2 Tax=S... [more]
A0A812VXS0_9DINO5.240e-936.47Ivns1abp protein n=1 Tax=Symbiodinium sp. CCMP2592... [more]
A0A1V5ZS09_9BACT7.810e-937.97Kelch motif protein n=1 Tax=Candidatus Latescibact... [more]
A0A7Y2BEV6_9DELT1.150e-836.78Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_99contigContig_99:277399..277737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152997|gw1.99.118.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CVJC@1|root,2RS54@2759|Eukaryota
Evalue5.54e-11
Seed ortholog112098.XP_008607012.1
Hectar predicted targeting categoryother localisation
TranscriptId153319
TrackFilteredModels1
ProteinId152997
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152997gene_12257Tribonema minus UTEX_B_3156 geneContig_99 277399..277737 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12257_1exon_12257_1Tribonema minus UTEX_B_3156 exonContig_99 277399..277737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12257CDS_12257Tribonema minus UTEX_B_3156 CDSContig_99 277399..277737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152997Trimin1|152997|gw1.99.118.1Tribonema minus UTEX_B_3156 polypeptideContig_99 277399..277737 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12257 ID=mRNA_12257|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_99:277399..277737+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAATGGATCCAGCTGCGCGCTCACGGCCAGGCAGGCAGCTGGTGCGGCCG
CCGCAAGCACCAGGTCGTCAGCCACAGGGGCCACCTGTACCTCCTGGGGG
GCTACGCCATGGAGGGCACCAGCTCCCTCAACCTGAACGACGTGTGGCGC
AGCGACGACGGCGCGCACTGGTCCCAGATCACGCCCAGGGCGCCATGGAG
CGGGCGCGACGGTCACGTCGCGCTGGAGCACCTGGGCTCCATCTACATCA
TGGGCGGCACGCAGGACCTGCGCAGCAACGACAACGACGTCTGGCGCAGC
GCCAATGGCGTGAACTGGGTGCAGGTGTGCCGCGCGGCG
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protein sequence of jgi.p|Trimin1|152997

>Trimin1|152997|gw1.99.118.1 ID=Trimin1|152997|gw1.99.118.1|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
QWIQLRAHGQAGSWCGRRKHQVVSHRGHLYLLGGYAMEGTSSLNLNDVWR
SDDGAHWSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSNDNDVWRS
ANGVNWVQVCRAA
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mRNA from alignment at Contig_99:277399..277737+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12257 ID=mRNA_12257|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_99:277399..277737+ (Tribonema minus UTEX_B_3156 )
CAATGGATCCAGCTGCGCGCTCACGGCCAGGCAGGCAGCTGGTGCGGCCG CCGCAAGCACCAGGTCGTCAGCCACAGGGGCCACCTGTACCTCCTGGGGG GCTACGCCATGGAGGGCACCAGCTCCCTCAACCTGAACGACGTGTGGCGC AGCGACGACGGCGCGCACTGGTCCCAGATCACGCCCAGGGCGCCATGGAG CGGGCGCGACGGTCACGTCGCGCTGGAGCACCTGGGCTCCATCTACATCA TGGGCGGCACGCAGGACCTGCGCAGCAACGACAACGACGTCTGGCGCAGC GCCAATGGCGTGAACTGGGTGCAGGTGTGCCGCGCGGCG
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Coding sequence (CDS) from alignment at Contig_99:277399..277737+

>mRNA_12257 ID=mRNA_12257|Name=jgi.p|Trimin1|152997|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_99:277399..277737+ (Tribonema minus UTEX_B_3156 )
CAATGGATCCAGCTGCGCGCTCACGGCCAGGCAGGCAGCTGGTGCGGCCG
CCGCAAGCACCAGGTCGTCAGCCACAGGGGCCACCTGTACCTCCTGGGGG
GCTACGCCATGGAGGGCACCAGCTCCCTCAACCTGAACGACGTGTGGCGC
AGCGACGACGGCGCGCACTGGTCCCAGATCACGCCCAGGGCGCCATGGAG
CGGGCGCGACGGTCACGTCGCGCTGGAGCACCTGGGCTCCATCTACATCA
TGGGCGGCACGCAGGACCTGCGCAGCAACGACAACGACGTCTGGCGCAGC
GCCAATGGCGTGAACTGGGTGCAGGTGTGCCGCGCGGCG
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