mRNA_12218 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A835YK12_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK12_9STRA) HSP 1 Score: 320 bits (820), Expect = 1.150e-110 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 Query: 1 GTSGCATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 GTSGCATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL Sbjct: 1 GTSGCATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 161
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: D8LT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT63_ECTSI) HSP 1 Score: 170 bits (430), Expect = 6.810e-50 Identity = 83/155 (53.55%), Postives = 111/155 (71.61%), Query Frame = 1 Query: 10 GCATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGW 474 GC T +NPS + V+C R GL R+GRL C SSENC+S+S+V+ P K +PW YA T DA AF L+ + + +A + V+ + YILAEFP+KVPPGSVD VEFL++P D + +RS +RD++F+YPLQQPVSD+G ++RLE IRN LGW Sbjct: 106 GCTTSTNPSYSLVSCDRTGLDRNGRLLGCSSSENCLSTSAVKVPGKLGSPWEYAMRTDDADTAFASLVHAVE-RTSEATMKIVDREGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGW 259
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A7S2N0F5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0F5_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.500e-40 Identity = 85/168 (50.60%), Postives = 105/168 (62.50%), Query Frame = 1 Query: 1 GTSGCATISNPSATTVTCTRVGLAR--DGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPG-----SVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 G GC T +NPS TTVTCT A DGRL ++EN VS+SSVR+P++FS PW Y TETSDA+VA+ L+ + L V + Y+ A P PPG +D +EFLLRP DN+ +RSA+R SVFVYPL QPVSDR SN RL+ IR+ LGW L Sbjct: 125 GRRGCTTTTNPSTTTVTCTGELRANNADGRLSKISATENGVSTSSVRNPSRFSPPWTYLTETSDARVAWKSLVSAVNRVEPGGTLQIVELTDSYLHATVPTVSPPGLLGEAGLDDIEFLLRPEDNLVLYRSASRTSVFVYPLTQPVSDRNSNLKRLQKIRSILGWDEL 292
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A7S0AZ98_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZ98_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.930e-39 Identity = 80/168 (47.62%), Postives = 105/168 (62.50%), Query Frame = 1 Query: 1 GTSGCATISNPSATTVTC--TRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPG-----SVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 G GC T +NPS T VTC DGRL ++ N VS+SSVR+P++FS PWNY TETSDA A+ L++V+ +V++ D Y+ A P + PPG VD +EF+L+P DN+ +RSA+R SVFVYPL QPVSD+ +N RL IRN+LGW L Sbjct: 45 GRRGCKTDTNPSRTVVTCYGELKKYNEDGRLSKISATANGVSTSSVRNPSRFSPPWNYVTETSDASAAWKSLINVVNTAEPGIEIVELTDT--YLHATAPTQSPPGLTGPAGVDDLEFILKPEDNLVLYRSASRTSVFVYPLTQPVSDQNTNLKRLNKIRNKLGWGLL 210
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A7S2XTE5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTE5_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.950e-37 Identity = 81/172 (47.09%), Postives = 110/172 (63.95%), Query Frame = 1 Query: 1 GTSGCATISNPSATTVTCTRVGLAR----DGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPG-------SVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 G GC T +NPS T VTC VG R DGRL ++EN VS+SSVR+P++FS PW+YAT+TS+ ++A+ LL + LQ +++ V + YI A P PPG +D +EF+L+P DN+ +RSA+R S+FVYPL QPVSDR +N RL+ IR LGWA + Sbjct: 147 GRRGCVTDTNPSRTVVTC--VGDIRSSNADGRLSRVSANENGVSTSSVRNPSRFSPPWSYATQTSNPQIAWRSLLQTLQLQ---TDILIVESTDTYIHATCPTLSPPGLFSNNEAGLDDLEFVLKPEDNLVLYRSASRTSLFVYPLTQPVSDRNTNLKRLDKIRTTLGWAMM 313
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A7S1IFF5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IFF5_9EUGL) HSP 1 Score: 139 bits (349), Expect = 2.570e-37 Identity = 71/146 (48.63%), Postives = 102/146 (69.86%), Query Frame = 1 Query: 46 VTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 V C R G + GRL PC SSENC +S++V SP++F PW+Y+ +T+D AF KL++ + + + A L++V++ YI A P+ VPP S+D +EFL+RP D++ + R ATR SVFVYPL Q V D+G+ +DRL +IR +LGWA L Sbjct: 159 VECVRFGTPQ-GRLLPCSSSENCSASTAVNSPSQFVPPWDYSIDTNDPHQAFKKLVESVSEE-QGAMLIEVDESRYYIHATAPSAVPPTSLDDIEFLMRPDDSLVTHRVATRKSVFVYPLTQIVGDQGATKDRLNSIRERLGWAEL 302
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A6U3QUW3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QUW3_9STRA) HSP 1 Score: 138 bits (347), Expect = 3.430e-37 Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 1 Query: 1 GTSGCATISNPSATTVTCTRVGLAR----DGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPG-----SVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 G GC T +NPS TTVTC +G R DGRL ++EN VS+S+VR+P++FS PW + TETSDA+VA+ L++ + +V++ D Y+ A P PPG +D +EF+LR DNV +RSA+R SVFVYPL QPVSDR SN RL+ IR+ LGW L Sbjct: 113 GRRGCNTNTNPSTTTVTC--LGDLRKNNPDGRLTKISATENGVSTSAVRNPSRFSPPWTFLTETSDARVAWKSLINAVNTVEPGMQIVELTDT--YLHATAPTVSPPGLLGEAGLDDLEFILRVEDNVVLYRSASRTSVFVYPLTQPVSDRNSNLKRLQKIRSILGWEEL 278
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A6V1S530_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S530_HETAK) HSP 1 Score: 137 bits (345), Expect = 5.350e-37 Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 1 Query: 40 TTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDD--NLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 TT++C R G RDGRL C +ENC+S+S+V++P+K++APW Y T+T+ A+ L+++ + L V D Y+ PAKVPPGS D +EFLLRPAD + +RSATRD+V VYP QQ + + G RLE IR+ LGW L Sbjct: 110 TTISCRRYGTDRDGRLLGCLPNENCLSTSAVKNPSKYAAPWTYYTQTASGDSAWRALVELAETDSLNLGLKVVEKDPSRYYLHLTAPAKVPPGSTDDLEFLLRPADKIVLYRSATRDTVLVYPFQQYLPEHGQTAGRLETIRDSLGWDIL 259
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A7S2RG67_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG67_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.670e-36 Identity = 73/159 (45.91%), Postives = 102/159 (64.15%), Query Frame = 1 Query: 13 CATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLV--DVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 C T SNP TT TC RVGL +GRL C + ENC+S+SSV+S +K+S PW+Y ET + A+ L + I+ A + DV+ + LY+ P+ VPP D +EF+L P + + FRSA+R SVF++PLQQPVSD G + RL+ +R+ LGW +L Sbjct: 74 CRTTSNPFFTTKTCYRVGLV-EGRLGKCLADENCMSTSSVQSASKYSPPWDYTPETLNPDRAWKSLKLALLQTIQGARVEAEDVSTERLYLHVTAPSAVPPAGTDDLEFVLDPKEKLVFFRSASRSSVFLFPLQQPVSDNGRHLSRLQNVRSTLGWGSL 231
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Match: A0A1E7FHJ7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHJ7_9STRA) HSP 1 Score: 136 bits (343), Expect = 3.070e-36 Identity = 79/165 (47.88%), Postives = 103/165 (62.42%), Query Frame = 1 Query: 1 GTSGCATISNPSATTVTCTRVGLAR--DGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPG--SVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGWAAL 483 G GC T +NPS T VTC + DGRL ++EN VS+SSV++P++FS PW+Y TET DAK A+ L + + ++++ D+ Y+ A P PPG VD +EFL+RP DNV +RSA+R SVFVYPL QPVSD SN RL+ IR LGW L Sbjct: 152 GRRGCITNTNPSRTIVTCRGDMQSNNPDGRLSKVSATENGVSTSSVKNPSRFSPPWSYLTETQDAKRAWKSLQSAVLNVDQSCQIIELTDN--YLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGWEEL 314 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155378 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12218 ID=mRNA_12218|Name=jgi.p|Trimin1|155378|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_85:601720..602956+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCACAAGTGGATGTGCCACCATATCAAACCCCTCTGCAACCACTGTTACback to top protein sequence of jgi.p|Trimin1|155378 >Trimin1|155378|gw1.85.89.1 ID=Trimin1|155378|gw1.85.89.1|Name=jgi.p|Trimin1|155378|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp GTSGCATISNPSATTVTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFback to top mRNA from alignment at Contig_85:601720..602956+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12218 ID=mRNA_12218|Name=jgi.p|Trimin1|155378|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1237bp|location=Sequence derived from alignment at Contig_85:601720..602956+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_85:601720..602956+ >mRNA_12218 ID=mRNA_12218|Name=jgi.p|Trimin1|155378|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_85:601720..602956+ (Tribonema minus UTEX_B_3156 )back to top |