mRNA_12200 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A835YRV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV3_9STRA) HSP 1 Score: 162 bits (410), Expect = 9.370e-51 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1
Query: 1 RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA 237
RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA
Sbjct: 1 RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA 79
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI000CD8F68A (uncharacterized protein LOC111884893 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8F68A) HSP 1 Score: 65.1 bits (157), Expect = 1.750e-10 Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
P+TG+++YLR LL+H G ++ +RT+ + TY+T+ DA A G+ D+KE L T EE S T ++RSLF L L
Sbjct: 232 PSTGELFYLRILLFHQKGCKSLYDIRTVRENTYSTFCDACEALGVTGDDKEWLTTFEEASSWATSFEIRSLFFHLLL 308
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI0010A30B79 (uncharacterized protein LOC114745432 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A30B79) HSP 1 Score: 63.5 bits (153), Expect = 6.090e-10 Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAGRN-FEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
P++G+++YLR LL G FE ++T++ TY+T++DA FA G++ D+ E + ++E TG QLR LFA + L
Sbjct: 747 PSSGELYYLRVLLTKVRGPTCFEDIKTVNGVTYDTFRDACFACGLLDDDSEYISAIKEASVWATGSQLRKLFANMLL 823
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI0010A34E83 (uncharacterized protein LOC114724484 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A34E83) HSP 1 Score: 63.2 bits (152), Expect = 8.420e-10 Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
P++G+++YLR LL G R++E++RT++D Y T+++A FA G++ D+KE + ++E TG LR +F ++ L
Sbjct: 825 PSSGELYYLRILLTKVRGPRSYEEIRTVNDVLYPTFREACFALGLLDDDKEFICAIKEAAIWATGTSLRKMFVSMLL 901
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI001929AA4B (uncharacterized protein LOC120276027 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AA4B) HSP 1 Score: 63.2 bits (152), Expect = 8.430e-10 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
PA G+++YLR LL G R++E +RTI++ Y TY++A FA GI+ D+ E L + TG QLR LF T+ L
Sbjct: 888 PAAGELYYLRLLLNEIKGARSYEDLRTINNVVYATYREACFALGILGDDSEWSDALIQAAHWATGAQLRQLFVTIIL 964
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI001967B690 (uncharacterized protein LOC120580657 n=2 Tax=Medicago truncatula TaxID=3880 RepID=UPI001967B690) HSP 1 Score: 63.2 bits (152), Expect = 8.470e-10 Identity = 31/79 (39.24%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA 237
P+TG+V+YLRR+L G ++E ++T+++ Y+T+++A +A G + D+KE + ++E TG LR LF TL L A
Sbjct: 1096 PSTGEVYYLRRMLTCVKGPTSYEDIKTVNNILYDTFREACYAMGFLEDDKEYIAAIKEASVWATGVFLRILFVTLLLSA 1174
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A6A5M7H6_LUPAL (ATP-dependent DNA helicase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7H6_LUPAL) HSP 1 Score: 62.0 bits (149), Expect = 2.130e-9 Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAGRN-FEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
P TG+++YLR +L G +E +RT+SD Y+T++DA FA G++ D++E + L+E +G LR LF T+ L
Sbjct: 599 PCTGELYYLRMMLTMVKGATCYEDIRTVSDIQYSTFRDACFAMGLLQDDREYMEALKEAYDWGSGFYLRKLFVTMLL 675
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A2U1Q717_ARTAN (ATP-dependent DNA helicase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q717_ARTAN) HSP 1 Score: 62.0 bits (149), Expect = 2.160e-9 Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFA 219
PA G+++Y R LL H G +FE +RT+++ T++TY++A A G++ D+KE I L+E T +LR LFA
Sbjct: 986 PAAGELFYFRILLAHQKGCTSFEDVRTVNNHTFSTYREACQAMGLLDDDKEWDIALQEAAMSATASELRMLFA 1058
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A6A5LVF8_LUPAL (ATP-dependent DNA helicase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LVF8_LUPAL) HSP 1 Score: 61.6 bits (148), Expect = 2.920e-9 Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
P TG+++YLR +L G R++E +RTIS+ Y T++DA FA G++ D++E + + E + +G LR LF T+ L
Sbjct: 840 PCTGELYYLRMMLTVVKGPRSYEDIRTISENQYPTFRDACFAMGLLKDDREYIDAIREAKDWGSGFYLRKLFVTMLL 916
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A6A5LSH7_LUPAL (ATP-dependent DNA helicase n=4 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LSH7_LUPAL) HSP 1 Score: 61.6 bits (148), Expect = 2.940e-9 Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
P TG+++YLR +L G R++E +RTIS+ Y T++DA FA G++ D++E + + E + +G LR LF T+ L
Sbjct: 832 PCTGELYYLRMMLTVVKGPRSYEDIRTISENQYPTFRDACFAMGLLKDDREYIDAIREAKDWGSGFYLRKLFVTMLL 908 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12200 ID=mRNA_12200|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_85:373685..373921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGACCTGCAACAGGCGATGTTTGGTACTTGAGGCGCTTACTTTACCACCAback to top protein sequence of jgi.p|Trimin1|153107 >Trimin1|153107|gw1.85.76.1 ID=Trimin1|153107|gw1.85.76.1|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKback to top mRNA from alignment at Contig_85:373685..373921- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12200 ID=mRNA_12200|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_85:373685..373921- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_85:373685..373921- >mRNA_12200 ID=mRNA_12200|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_85:373685..373921- (Tribonema minus UTEX_B_3156 )back to top |