mRNA_12174 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A836C958_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C958_9STRA) HSP 1 Score: 600 bits (1548), Expect = 7.010e-216 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query: 1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPAPLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 1002
LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPAPLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN
Sbjct: 1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPAPLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 334
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A8J2S9Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Y5_9STRA) HSP 1 Score: 263 bits (672), Expect = 1.170e-75 Identity = 149/336 (44.35%), Postives = 201/336 (59.82%), Query Frame = 1
Query: 1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPA-PLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPL-HRLLLHPVAVGTPLSEAPYQTSDMFN 1002
+L ++P G+IA+R V VTF PD+AG + F ++ VD G I DP A LL LG++ R + PA PL C + ASFPT++V D RVEG L + T+A+W SL+ +N L PLT +E+ FN S+PD+ LPR+P FVP P G QV+L+Q+ NPG LP FS+H PNERDIELE WADEGEPS + + IID+L+ F+++PR+ +L PG TLR+ Y +S +DG+H LP+LL+I +GKQ+WL L+G TL P+L +P DP+ H+L LHPVAVGT AP Q + N
Sbjct: 1013 ILIDEPEGLIAARQRKRVKVTFHPDAAGDFEFACACKVHAVDE-DGNEIALDPEQASLLTLGEEARDVELVRGRDPFSATVAELSKK--------SPALPLTCVVKGSASFPTIIVRDIRVEGAKLGCS-TSAMWAHFSLSALNKTLLTPLTSKEVKFNQESSPDLQLLPRYPCKFVPEPLGNPPQVVLIQIENPGLLPASFSVHLPNERDIELEPWADEGEPSPEVVMVNKIIDELKCFDISPRQASLEPGGSCTLRIAYVPSSREFDGKHTLPILLKIGQGKQMWLDLEGRTLAPREPYLVVPKDPMTHKLPLHPVAVGTRPEHAPLQILECVN 1338
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A7S1U5R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5R9_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.230e-51 Identity = 127/346 (36.71%), Postives = 171/346 (49.42%), Query Frame = 1
Query: 1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQ--------RAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPA--------------PLQCSITARASFPTVMVSDARVEGGALAAA-------------ATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTL------------PSPAP 897
L + P G + +RS + TF+P G Y LLAR V A G R + LL +KQ RA AA + A PL C +T RA+FP V+V DAR L + A LW L +N L PLT E+ FN S+PD+ + RF + F+P+ G + QVLLL + N G LP++F +HFPNE+++E++ WADEGEP+ AQ+RQ+ II +LR F VTPR G L PG+ TLRL Y+Y S Y G HD+P+L+++ GKQ +LHL+G TL P+PAP
Sbjct: 1037 LTVDHPSGRLEARSRTMLKCTFRPPMDGLYEMALLAR---VSKAGGGRRAPEEERPQLLAQDEKQLLEQAHAARARAALYPQLSPSAYPHAALPEWVGRELVEPQAADGLKNGLVDDSALPLTCGLTGRAAFPRVIVRDARCPTPPLPSVNLMSTPSFGNLDFTAAQLWDRLDLPTMNTFLKQPLTPAEVRFNLESSPDLSRVRRFDLRFLPNVIGAQPQVLLLDIANTGFLPSEFDVHFPNEKEVEVDDWADEGEPTTAQVRQTRIIQELRCFSVTPRSGRLQPGESTTLRLRYAYNSNDYGGLHDIPILVKVKYGKQFYLHLKGQTLMPTDTIALADARPAPAP 1379
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A7S2CV11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CV11_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.020e-49 Identity = 83/181 (45.86%), Postives = 119/181 (65.75%), Query Frame = 1
Query: 463 IAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDP-LHRLLLHPVAVGTPLSEAPYQTSDMFN 1002
+ N S+PD+ L +P+ F+P+ G +L+Q NPG L + FS+H PNER++E+ WADEGEP+ AQ++++ IID+LR F V PR G L P + V L L Y+Y++L YDG+HDL +L +I GKQ WL L+GTTLP P+L+ P P +L PVA+GT S+ P Q +++ N
Sbjct: 1 VRLNLDSSPDLSRLKVYPLRFLPAALGSPDNEILVQFSNPGSLTSSFSIHMPNEREVEVPHWADEGEPTVAQIKENHIIDELRCFHVQPRSGVLKPHESVALHLTYNYSNLEYDGKHDLRILCKIINGKQFWLRLEGTTLPPYVPYLYRPQHPDCSAQMLFPVALGTTKSQTPLQMTELIN 181
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A485KCM2_9STRA (Aste57867_2382 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCM2_9STRA) HSP 1 Score: 181 bits (459), Expect = 3.130e-47 Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 1
Query: 298 LQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLP 912
++ S+ A ASFPT++V D R L +TA W + +N L APLT EE+ FN S+PD+ L F + F P+ G + +QLRNPG L F +++PNE D+ELE WAD GEP+A +LRQ+ IID ++F +TPR G L P Q + L + Y+Y+S+ Y+G HDLP++L +A+GK+L L L G TLP PHL +P
Sbjct: 1010 VKMSVEASASFPTLVVEDIR-----LLQTSTATGWSQFQVEPINKFLMAPLTKEELRFNAESSPDLSTLTSFHLQFTPAVHGSSTEEAWVQLRNPGSLVVTFRIYYPNESDVELEPWADRGEPTAEELRQNIIIDS-KLFTITPRTGVLQPHQSLVLSISYAYSSMQYEGIHDLPIMLNVAQGKKLTLVLNGRTLPPSTPHLFIP 1208
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A425CU65_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CU65_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.420e-46 Identity = 102/237 (43.04%), Postives = 143/237 (60.34%), Query Frame = 1
Query: 310 ITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGT------PLSEAPYQTSDMFN 1002
+ A ASFP++++ D RV T+ W + +NA L+APLT E+ FN S+PDM L F + F P+ G +QV +QLRNPG L + +++P+E D+ELE WAD GEP+A +LRQ+ I+D ++F ++PR G L P + + L L YSY SL YDG HDL V+L +++GK+L L L G TLP +P L LP D +LHPV VG PL++ Q +FN
Sbjct: 791 VDASASFPSLVIEDLRV-----LRTPTSTAWTQFQVPALNAFLAAPLTQHEVDFNAESSPDMTTLSSFHMQFTPATEGTPSQVAYVQLRNPGSLVVAYRIYYPSETDVELERWADRGEPTANELRQNIIVDS-KLFTISPRSGVLQPHETLVLSLSYSYESLQYDGIHDLSVVLNVSQGKKLTLILHGRTLPVSSPLLFLPSDVC---VLHPVQVGQSMRSTYPLAKPCTQQIPVFN 1018
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: W4FGI1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGI1_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.650e-46 Identity = 102/237 (43.04%), Postives = 143/237 (60.34%), Query Frame = 1
Query: 310 ITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGT------PLSEAPYQTSDMFN 1002
+ A ASFP++++ D RV T+ W + +NA L+APLT E+ FN S+PDM L F + F P+ G +QV +QLRNPG L + +++P+E D+ELE WAD GEP+A +LRQ+ I+D ++F ++PR G L P + + L L YSY SL YDG HDL V+L +++GK+L L L G TLP +P L LP D +LHPV VG PL++ Q +FN
Sbjct: 1043 VDASASFPSLVIEDLRV-----LRTPTSTAWTQFQVPALNAFLAAPLTQHEVDFNAESSPDMTTLSSFHMQFTPATEGTPSQVAYVQLRNPGSLVVAYRIYYPSETDVELERWADRGEPTANELRQNIIVDS-KLFTISPRSGVLQPHETLVLSLSYSYESLQYDGIHDLSVVLNVSQGKKLTLILHGRTLPVSSPLLFLPSDVC---VLHPVQVGQSMRSTYPLAKPCTQQIPVFN 1270
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A7R9YEH2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEH2_9STRA) HSP 1 Score: 177 bits (449), Expect = 6.700e-46 Identity = 96/210 (45.71%), Postives = 127/210 (60.48%), Query Frame = 1
Query: 295 PLQCSITARASFPTVMVSDARV--------------EGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTL 882
PL C + RA+FP V D R +T+ LW+ +A++NA L PLT EE+ N AS+PD+ L F V F P+ G +VLLL + N G LP +F +HFPNE+D+E+E WADEG+P+ Q+R + II +R F V+P+ G L PG+ VTLRL YSY S YDG HDLPVL++I GKQ +LHL+G TL
Sbjct: 725 PLVCRMRGRAAFPRFEVRDLRCPTYPEPTPELFTESSDTVPLERSTSQLWRRLDVAKLNAFLFQPLTPEEVRLNMASSPDLTRLNSFDVRFTPAALGSAEEVLLLDVVNTGFLPANFRVHFPNEKDVEVEDWADEGDPTETQVRVTRIIQDIRCFGVSPKAGVLEPGEAVTLRLSYSYESRDYDGVHDLPVLVKIRHGKQFYLHLKGCTL 934
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A6G0WV66_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WV66_9STRA) HSP 1 Score: 172 bits (436), Expect = 3.570e-44 Identity = 93/220 (42.27%), Postives = 135/220 (61.36%), Query Frame = 1
Query: 298 LQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVG 957
++ ++ A ASFPT++V D R++ +T+ W + +N L PLT EE+ N S+PD+ L +F + F P+ G ++ + +QL NPG L F ++FPNE D+ELE WAD GEP+A +LRQ+ IID ++F +T R G L P Q + L + YSY S+ Y+G HDLP++L +A+GK+L L L G TL PHL LP H + L PV +G
Sbjct: 1003 VKMAVKASASFPTLVVQDIRLQN-----TSTSTAWSQFQVEPINTFLMTPLTKEELKLNAESSPDLSTLTKFNLQFTPAVVGSPSEDVWIQLFNPGSLVVSFRIYFPNESDVELEPWADRGEPTAEELRQNIIIDT-KLFTITSRSGVLEPKQSLLLCMSYSYASMQYNGIHDLPIILSVAQGKKLALVLNGKTLSVSTPHLFLPN---HTVSLSPVMLG 1213
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: D7FIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG0_ECTSI) HSP 1 Score: 171 bits (434), Expect = 6.860e-44 Identity = 85/177 (48.02%), Postives = 120/177 (67.80%), Query Frame = 1
Query: 481 STPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLP---GQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 1002
S+PD LPRF V F+PS G+ + LQ+ NPG LPT ++ PN + +E+E WA+EGEP+A +LRQ++IID+L+ F +TP GT++ G+G L + YS SL Y G HDLPVL+ I +G+ WL L+GTT+P +P L++P +L PVA+GTPLSEAP QT+++ N
Sbjct: 1175 SSPDTSQLPRFDVPFIPSVIGKGPVTITLQVSNPGFLPTSVTVKLPNAKPVEMETWANEGEPTAEELRQNEIIDRLKAFSLTPDPGTVVEVSAGEGRPLVISYSADSLSYGGVHDLPVLVSIKEGRHFWLDLKGTTVPPQSPTLYVPTGLPRSYVLEPVAIGTPLSEAPLQTTELLN 1351 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12174 ID=mRNA_12174|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1002bp|location=Sequence derived from alignment at Contig_85:201752..205011- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTATTGGCCAACAAGCCGCGCGGCATCATCGCCTCGCGCAGCACCGTGTCback to top protein sequence of jgi.p|Trimin1|141925 >Trimin1|141925|gw1.85.41.1 ID=Trimin1|141925|gw1.85.41.1|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMback to top mRNA from alignment at Contig_85:201752..205011- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12174 ID=mRNA_12174|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3260bp|location=Sequence derived from alignment at Contig_85:201752..205011- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_85:201752..205011- >mRNA_12174 ID=mRNA_12174|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1002bp|location=Sequence derived from alignment at Contig_85:201752..205011- (Tribonema minus UTEX_B_3156 )back to top |