|
|
Homology
BLAST of jgi.p|Trimin1|351251 vs. uniprot
Match: A0A836C7P4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P4_9STRA) HSP 1 Score: 298 bits (764), Expect = 2.780e-92 Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 3
Query: 21 MASAPLDELEKLLASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMPRRATPQRSTAYHARSYSPAGTASDSIGGXXXXXXXAQSPGRYHRHSHRAGSRPRTKVLELLRLVETRNAELEAAIGAADDRADAAEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDAQAPAIGLTSRTGPPIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSDACTHTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAHAALDEREGAVRGAEAAAXXEGAALQRRLRQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLAWRLPAAHADRRRLQSLVPAMVAXXXXXXXXXXGSWVLLAAGLPLAALCXXXXXXXXXXXXXXXXXPRLRSGSE 1496
MASAPLDELEKLLASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMPRRATPQRSTAYHARSYSPAGTASDSIGGXXXXXXXAQSPGRYHRHSHRAGSRPRTKVLELLRLVETRNAELEAAIGAADDRADAAEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDAQAPAIGLTSRTGPPIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSDACTHTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAHAALDEREGAVRGAEAAAXXEGAALQRRLRQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLAWRLPAAHADRRRLQSLVPAMVAXXXXXXXXXXGSWVLLAAGLPLAALCXXXXXXXXXXXXXXXXXPRLRSGSE
Sbjct: 1 MASAPLDELEKLLASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMPRRATPQRSTAYHARSYSPAGTASDSIGGXXXXXXXAQSPGRYHRHSHRAGSRPRTKVLELLRLVETRNAELEAAIGAADDRADAAEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDAQAPAIGLTSRTGPPIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSDACTHTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAHAALDEREGAVRGAEAAAXXEGAALQRRLRQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLAWRLPAAHADRRRLQSLVPAMVAXXXXXXXXXXGSWVLLAAGLPLAALCXXXXXXXXXXXXXXXXXPRLRSGSE 492
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|351251|estExt_Genemark1.C_Ctg_840062 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 351573 |
| Track | FilteredModels1 |
| ProteinId | 351251 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12142 ID=mRNA_12142|Name=jgi.p|Trimin1|351251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1499bp|location=Sequence derived from alignment at Contig_84:541507..545510- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CGGAGAGTGGCGCAAGAAGCATGGCTAGTGCGCCGCTGGACGAGCTGGAA
AAGCTGCTGGCTAGTGCAAGGAAGAGACGGCGACAGCATGGCACCACACC
GCCCTCGCCGCCGCCGCCGCGCGGCCGGCGACGCGACTGGAGCGAGCACC
CGTACCACGACTCGCCGCAGCAGTTGCCGCCGCCGCAGCAACAGCAGCAG
CACTCAATGCCGCGCCGCGCTACGCCTCAGCGCTCCACGGCGTACCACGC
GCGCTCCTACAGCCCTGCCGGCACTGCATCTGACTCCATTGGCGGCGGCG
GCGGCGGCAGCGGCGGCGCACAGTCGCCGGGCCGGTACCACCGGCACTCG
CACCGCGCCGGCTCGAGGCCGCGCACAAAGGTTCTGGAGCTGCTGCGGCT
GGTCGAGACGCGGAACGCGGAGCTCGAGGCGGCGATCGGCGCCGCCGACG
ACCGCGCCGACGCCGCGGAGCAGTCCGTGGAACGCGCGGAGGACCGCGTC
GTCGCCGCGGAACTCGCCGCGGAGCGCGCCGAGGAGCGTGCCGCCGCCGC
GGAACAGGCCGCGGAACGCGCGGAGCGGCGCGCGGCGGTGGCGGAGGCGG
CGGCGGAGCGCGCGCGTGCACACGCGGCGGCACACATGCAGCGCGGCGAC
GCGGCAGCCGCGGCAGCGCAGGAGGAGCTGCGGCAACCCGCGGCGGCGGC
AAAGGCACGCGAGGAGCGCGCACTGCAGGACGCGCAGGCGCCCGCCATCG
GTCTCACCTCACGCACCGGCCCGCCCATTGTCGCTGCCGCAGCCGCGGCG
GCGCAGGAGGAGCTGCGGCGGCGCACGGCGGCGGCGGCGGCGCGCGAGGA
GCGCGCGCTGCAGGACGCGCAGGCGCTGAGCGATGCGTGCACTCACACTT
CCGCGGCGGCGCAGGAGGAGCTGCGGCGGCGCGCGGCGGCGGCAGCGGCG
CGCGAGGAGCGCGCGCTGCAGGACGCGCAGGCGCTGAGCGTTGCGCACGC
GGCACTGGACGAGCGGGAGGGCGCCGTGCGGGGCGCGGAGGCGGCGGCGG
CGGCGGAGGGCGCGGCGCTGCAGCGGCGGCTGCGGCAGCTCGAGCGGCGC
GAGAGACGGCTCGCAGCCGCGGCGGCGCACGCGGCGGCGACCACGCCCAC
CACCGCCGTGACGCGCGACGCCGCGCTGCTGGCGTGCCTCGCGTGCGCCG
CCGCCGGCGCCGCCGCGCTGCCGCCACGCTGGGCCGCCGCCGCCACCGCC
GCCGTCGCCGCCGCCACCGTTCTCGCCTGGAGGCTGCCAGCAGCACACGC
GGACAGAAGACGGCTGCAGAGTTTGGTGCCGGCGATGGTGGCGGCAGGCG
CTGCGGCGGCGGCAGCTGCGGCGGGCTCTTGGGTGCTGCTGGCAGCGGGG
CTGCCGCTGGCGGCGCTGTGCGCTGCGGCGTGCGACGCGCCGCCGCCCGC
GCCGCCGCCGCTGCCGCCGCCGCCGCGGCTGCGCAGCGGCAGCGAGTGA back to topprotein sequence of jgi.p|Trimin1|351251 >Trimin1|351251|estExt_Genemark1.C_Ctg_840062 ID=Trimin1|351251|estExt_Genemark1.C_Ctg_840062|Name=jgi.p|Trimin1|351251|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=493bp
MASAPLDELEKLLASARKRRRQHGTTPPSPPPPRGRRRDWSEHPYHDSPQ
QLPPPQQQQQHSMPRRATPQRSTAYHARSYSPAGTASDSIGGGGGGSGGA
QSPGRYHRHSHRAGSRPRTKVLELLRLVETRNAELEAAIGAADDRADAAE
QSVERAEDRVVAAELAAERAEERAAAAEQAAERAERRAAVAEAAAERARA
HAAAHMQRGDAAAAAAQEELRQPAAAAKAREERALQDAQAPAIGLTSRTG
PPIVAAAAAAAQEELRRRTAAAAAREERALQDAQALSDACTHTSAAAQEE
LRRRAAAAAAREERALQDAQALSVAHAALDEREGAVRGAEAAAAAEGAAL
QRRLRQLERRERRLAAAAAHAAATTPTTAVTRDAALLACLACAAAGAAAL
PPRWAAAATAAVAAATVLAWRLPAAHADRRRLQSLVPAMVAAGAAAAAAA
AGSWVLLAAGLPLAALCAAACDAPPPAPPPLPPPPRLRSGSE* back to topmRNA from alignment at Contig_84:541507..545510- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12142 ID=mRNA_12142|Name=jgi.p|Trimin1|351251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4004bp|location=Sequence derived from alignment at Contig_84:541507..545510- (Tribonema minus UTEX_B_3156 )
CGGAGAGTGGCGCAAGAAGCATGGCTAGTGCGCCGCTGGACGAGCTGGAA
AAGCTGCTGGCTAGTGCAAGGAAGAGACGGCGACAGCATGGCACCACACC
GGTGAGGCAGTAATTCGCAACTATGTACACTCGTGAGACTGCGTAATGTA
CTCAGCAGGGTTAGGCAAGTTCCCTGTCACATCAGTCGGTACACCAGAGA
ACAACGGCTTTCACCAGTACCTAGATGAGCTACCCTAAGACATGTGCCAC
TGCCGGCAAGGACATTGGCTTCATTCAACTAGCAGTAAGTTCAGATGTAC
GCATTCAGGCGTGTGGTACACAATTGCATGCACTTGCACCCAGTCGTTGA
AGAATATAGGCAAGGCTTCCCCTGCGTCCTCTTGCAGCAGGAAGCTTTGG
ACAATGGGCTGCCGCCGCCGATCACTTGCCACCACTGCCGTGCGGCAGGG
CACAAGATTGAAGCACGCACCCGCACCACGACTCGCTGCGGCAGCTCCTG
CACAGGCGTCACAATGCAGTAGCGTTCAATGCGAGCCCGTGCCATGCCTT
CTTCAACACGACACACACACACACACACGCCGTACACACCAATGCCTGAG
CGCTGCCACCGCTGCACGCGCGTCGCGCTCGCGCGCAGCCCTCGCCGCCG
CCGCCGCGCGGCCGGCGACGCGACTGGAGCGAGCACCCGTACCACGACTC
GCCGCAGCAGTTGCCGCCGCCGCAGCAACAGCAGCAGCACTCAATGCCGC
GCCGCGCTACGCCTCAGCGCTCCACGGCGTACCACGCGCGCTCCTACAGC
CCTGCCGGCACTGCATCTGACTCCATTGGCGGCGGCGGCGGCGGCAGCGG
CGGCGCACAGTCGCCGGGCCGGTACCACCGGCACTCGCACCGCGCCGGCT
CGAGGCCGCGCACAAAGGTATGTATGTAGGGCAGCTGCTGCGGCAACGGT
CCGCAGCCCCGGTTTAGCAAGAAGGGTTCCTGAAGTTTGCGGTGGACGCT
GAGGGAGGGGGGATGGTGAGGCGGTGCTGAGCGCAGTAGTCTCTCGCTCA
CGGACCGCAACTGTCACAGAGGGCGGGGCGCGCGTTCGCGGCCCGTGAGC
CACTGCGCGCTTCCGCTGGCCGCCGAGCGATGCAGGGTGCGCGCGCACTC
CTTCCGTGAGGTACAATGCACATGGCTCAACGACACGCCACCCAACACCC
ACTGCCGTCCGCGCGCAGGTTCTGGAGCTGCTGCGGCTGGTCGAGACGCG
GAACGCGGAGCTCGAGGCGGCGATCGGCGCCGCCGACGACCGCGCCGACG
CCGCGGAGCAGTCCGTGGAACGCGCGGAGGACCGCGTCGTCGCCGCGGAA
CTCGCCGCGGAGCGCGCCGAGGAGCGTGCCGCCGCCGCGGAACAGGCCGC
GGAACGCGCGGAGCGGCGCGCGGCGGTGGCGGAGGCGGCGGCGGAGCGCG
CGCGTGCACACGCGGCGGCACACATGCAGCGCGGCGACGCGGCAGGTGCG
CGCCTGTGCGCTGAGCGCTGCTATCAGCGTGCGGCGGAGGAGCGTCGCAT
GTTGAGATGGACGGGAGAGGGGGGGGGGGGGGGGGAAGCTGGGAAAGACG
TTCAGCGGGACTGTGTTCGCTGCGACGTCAAGCTGCGACGGCGGCAGCCG
CTGCGACAACACATCTCAATCACAGCAGCACCTGCTGCAAGGCATCGTAA
TTGTGAGGAGGGGCATGCCGGACTGCTGCCGAAGCCGCAGTGGCACGCAA
AGCGCTTTAACAGCGCGCGGCGGAGGCAGTGGTGCAAGCGGGACACGTGC
TGCAGAGCGCACAGAGGCAAGCACTGCAACCTCTGCATTCGGATCACCAC
TACTAAGCCGGTGCGCACGTACGCACTCCACTCGCGCTCGGCTGTCGTTG
CGCGACGTCATCATCGTCGGCACCTCGCACCCTCACCGCGCGCCGTGCCG
GTGCCGCCGCTGCTGCTGCCGCTGCAGCTGGGGCGGCGCAGGAGCAGCTG
CTCCTGCCACGATCCTGACCCTAACAGGATGCACATGCGCTGCAAAATGC
AGCCCCCTGCAGTCCGTTTCACCACCACGCTGTCTCGGCGCTCGGCTGCT
TGCGCGCACTCACATCAGCAGCCTATTGCCACCGCGCGGAAGCGCCATCA
GTCTAAGATCGCGCATCCGCCGCGCACGCTGCCGCCGCAGCCGCGGCAGC
GCAGGAGGAGCTGCGGCAACCCGCGGCGGCGGCAAAGGCACGCGAGGAGC
GCGCACTGCAGGACGCGCAGGCGCCGTAGCTTGCATGCACTCACGTGTGT
CAGTCATCCGCCGCCGCGCGACAGCGCCATCGGTCTCACCTCACGCACCG
GCCCGCCCATTGTCGCTGCCGCAGCCGCGGCGGCGCAGGAGGAGCTGCGG
CGGCGCACGGCGGCGGCGGCGGCGCGCGAGGAGCGCGCGCTGCAGGACGC
GCAGGCGCTGAGCGATGCGTGCACTCACACTTGTTAGTCATCCGCCACGC
GACAGCGCCATCGGTCTCACCTCACGCACCGGCCCGCCCCTTGTCACTGC
CGCAGCCGCGGCGGCGCAGGAGGAGCTGCGGCGGCGCGCGGCGGCGGCAG
CGGCGCGCGAGGAGCGCGCGCTGCAGGACGCGCAGGCGCTGAGCGTTGCG
CACGCGGCACTGGACGAGCGGGAGGGCGCCGTGCGGGGCGCGGAGGCGGC
GGCGGCGGCGGAGGGCGCGGCGCTGCAGCGGCGGCTGCGGCAGCTCGAGC
GGCGCGAGAGACGGGTGAGTATGTAGGAGGGTGGTGGCGCTGGTAGTGAT
GTCGGCGTCAAGCTCTGAGTAGAGGCGTGCGCCTGGAGCTGGAGCTGGCG
AGGCTGCGATGTAGTGAACAGTGAATTGTGTCACCTGGTTTGGAGTGCGT
GCCGGGAGCAGCGGCGGCGGCGGCATCTGCTACAGCAGTGCATCTGCTGT
AGCGGCGAGAACGTTATGAGTTCAGGCACTCTTTTGAACTCTTGGAACTA
TGGGCTGACAGGGAACGGTTTGTTGGAAGAACACAAAGGCTGTCTCATGC
ATGATACCTCGACAGTGCGTTGTGCAAAGTGGACAGAGGCAGACCGAGGC
AATGCAACCCGTGTGCTTTGGGACGGGCAGGGAGTGATATGAACTGTCCA
CAGCAAACGTGGGCATGCCAGCCGAGTTCGCTCAAGCCAGTGACCTGACA
TGAAAATCTCTCTTCACAAAACTACACATCAACTGCAAGTGTGAAGTGCC
CAACCTCAAGTTCACCGGGACACTGCCACAATTAGGGATATGCACACCTA
CTGCACGCTCTAGCACTTCAGACGGCTGACCCAGAAAGCCGCAAATTAGA
CCCGCCGTTAGGTAGTCTGGGAGTGCAGCGATACCTGCGGCAGGGAAACG
TGGAGCAATGACCGCAGGATGCGCTGACTGATGCGCCGCATTGGCGCGGT
TCCATGCGCGCAGCTGGCAGCAGCGTGCGCAGCGGCGGCAACGCTTAACG
CCGCCTGGCGTACACTTCAACTGCGAGCCTGACATGAAGTGACAAGCTAC
TGTACACATGTCGCCAGCAAGCACTGATGCACACAACACCCGATCAATCT
CCCCGCGCGCGCAGCTCGCAGCCGCGGCGGCGCACGCGGCGGCGACCACG
CCCACCACCGCCGTGACGCGCGACGCCGCGCTGCTGGCGTGCCTCGCGTG
CGCCGCCGCCGGCGCCGCCGCGCTGCCGCCACGCTGGGCCGCCGCCGCCA
CCGCCGCCGTCGCCGCCGCCACCGTTCTCGCCTGGAGGCTGCCAGCAGCA
CACGCGGACAGAAGACGGCTGCAGAGTTTGGTGCCGGCGATGGTGGCGGC
AGGCGCTGCGGCGGCGGCAGCTGCGGCGGGCTCTTGGGTGCTGCTGGCAG
CGGGGCTGCCGCTGGCGGCGCTGTGCGCTGCGGCGTGCGACGCGCCGCCG
CCCGCGCCGCCGCCGCTGCCGCCGCCGCCGCGGCTGCGCAGCGGCAGCGA
GTGA back to topCoding sequence (CDS) from alignment at Contig_84:541507..545510- >mRNA_12142 ID=mRNA_12142|Name=jgi.p|Trimin1|351251|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1479bp|location=Sequence derived from alignment at Contig_84:541507..545510- (Tribonema minus UTEX_B_3156 )
ATGGCTAGTGCGCCGCTGGACGAGCTGGAAAAGCTGCTGGCTAGTGCAAG
GAAGAGACGGCGACAGCATGGCACCACACCGCCCTCGCCGCCGCCGCCGC
GCGGCCGGCGACGCGACTGGAGCGAGCACCCGTACCACGACTCGCCGCAG
CAGTTGCCGCCGCCGCAGCAACAGCAGCAGCACTCAATGCCGCGCCGCGC
TACGCCTCAGCGCTCCACGGCGTACCACGCGCGCTCCTACAGCCCTGCCG
GCACTGCATCTGACTCCATTGGCGGCGGCGGCGGCGGCAGCGGCGGCGCA
CAGTCGCCGGGCCGGTACCACCGGCACTCGCACCGCGCCGGCTCGAGGCC
GCGCACAAAGGTTCTGGAGCTGCTGCGGCTGGTCGAGACGCGGAACGCGG
AGCTCGAGGCGGCGATCGGCGCCGCCGACGACCGCGCCGACGCCGCGGAG
CAGTCCGTGGAACGCGCGGAGGACCGCGTCGTCGCCGCGGAACTCGCCGC
GGAGCGCGCCGAGGAGCGTGCCGCCGCCGCGGAACAGGCCGCGGAACGCG
CGGAGCGGCGCGCGGCGGTGGCGGAGGCGGCGGCGGAGCGCGCGCGTGCA
CACGCGGCGGCACACATGCAGCGCGGCGACGCGGCAGCCGCGGCAGCGCA
GGAGGAGCTGCGGCAACCCGCGGCGGCGGCAAAGGCACGCGAGGAGCGCG
CACTGCAGGACGCGCAGGCGCCCGCCATCGGTCTCACCTCACGCACCGGC
CCGCCCATTGTCGCTGCCGCAGCCGCGGCGGCGCAGGAGGAGCTGCGGCG
GCGCACGGCGGCGGCGGCGGCGCGCGAGGAGCGCGCGCTGCAGGACGCGC
AGGCGCTGAGCGATGCGTGCACTCACACTTCCGCGGCGGCGCAGGAGGAG
CTGCGGCGGCGCGCGGCGGCGGCAGCGGCGCGCGAGGAGCGCGCGCTGCA
GGACGCGCAGGCGCTGAGCGTTGCGCACGCGGCACTGGACGAGCGGGAGG
GCGCCGTGCGGGGCGCGGAGGCGGCGGCGGCGGCGGAGGGCGCGGCGCTG
CAGCGGCGGCTGCGGCAGCTCGAGCGGCGCGAGAGACGGCTCGCAGCCGC
GGCGGCGCACGCGGCGGCGACCACGCCCACCACCGCCGTGACGCGCGACG
CCGCGCTGCTGGCGTGCCTCGCGTGCGCCGCCGCCGGCGCCGCCGCGCTG
CCGCCACGCTGGGCCGCCGCCGCCACCGCCGCCGTCGCCGCCGCCACCGT
TCTCGCCTGGAGGCTGCCAGCAGCACACGCGGACAGAAGACGGCTGCAGA
GTTTGGTGCCGGCGATGGTGGCGGCAGGCGCTGCGGCGGCGGCAGCTGCG
GCGGGCTCTTGGGTGCTGCTGGCAGCGGGGCTGCCGCTGGCGGCGCTGTG
CGCTGCGGCGTGCGACGCGCCGCCGCCCGCGCCGCCGCCGCTGCCGCCGC
CGCCGCGGCTGCGCAGCGGCAGCGAGTGA back to top
|