mRNA_12134 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171710
Unique NamemRNA_12134
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A835YIP8_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIP8_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.110e-77
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MCHHTLRRASRRRRRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPRKRDGGDGDRPQLRRCNSDPEPSPPLVFPFFVLPDAKVRTC 330
            MCHHTLRRASRRRRRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPRKRDGGDGDRPQLRRCNSDPEPSPPLVFPFFVLPDAKVRTC
Sbjct:    1 MCHHTLRRASRRRRRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPRKRDGGDGDRPQLRRCNSDPEPSPPLVFPFFVLPDAKVRTC 110
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: D8LEF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.670e-16
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPR 210
            RRRS+MGT+GYMAPE+  +   PRS R GY+ AVD+WSLG T FKLLTG RPF R R
Sbjct:  356 RRRSIMGTQGYMAPEMVILPKQPRSVRVGYSNAVDYWSLGVTVFKLLTGSRPFDRRR 412
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A6H5J5J4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5J4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.730e-16
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPR 210
            RRRS+MGT+GYMAPE+  +   PRS R GY+ AVD+WSLG T FKLLTG RPF R R
Sbjct:  409 RRRSIMGTQGYMAPEMVILPKQPRSVRVGYSNAVDYWSLGVTVFKLLTGSRPFDRRR 465
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A835ZAC1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.240e-15
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   19 RRASRRRRRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPR 210
            R+ S+  RRRS+MGT GYMAPE+  +   PR+ R GYT+AVD+WSLG T +KLLTG RPF   R
Sbjct:  347 RKLSQSHRRRSIMGTHGYMAPEMVILLSQPRAVRKGYTKAVDFWSLGVTMYKLLTGVRPFENKR 410
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A7S3UVF1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVF1_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 2.370e-15
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRPR 210
            RR S++GT+GYMAPEV  +       R GYT+ VD+WSLG TT+KLLTG RPF  P+
Sbjct:   17 RRISIIGTKGYMAPEVVKLMSPADGPRKGYTKTVDYWSLGVTTYKLLTGRRPFDNPK 73
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: D7FP09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP09_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.730e-15
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRP 207
            +RRS+MGT+GYMAPE+A +      +R GY  AVDWWSLG T +K+LTG RPF  P
Sbjct:  374 KRRSIMGTKGYMAPEMAKLLNQSNDQRQGYDEAVDWWSLGVTVYKMLTGARPFDPP 429
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A6H5KIE1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.420e-15
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVA---NMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRP 207
            +RRS+MGT+GYMAPE+A   N A     +R GY  AVDWWSLG T +K+LTG RPF  P
Sbjct:  174 KRRSIMGTKGYMAPEMAKLLNQASESNDQRQGYNEAVDWWSLGVTVYKMLTGARPFDPP 232
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A7S3GQ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ14_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.970e-14
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   37 RRRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFT 201
            +R+ S+MGT GYMAPE+  M      E+ GYT AVDWWSLG T FKLLTG RPFT
Sbjct:  342 KRKLSIMGTFGYMAPEMVVMLSQASYEKTGYTCAVDWWSLGVTMFKLLTGYRPFT 396
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A0P1B3D1_PLAHL (Agc protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3D1_PLAHL)

HSP 1 Score: 74.3 bits (181), Expect = 3.260e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPFTRP 207
            RRR+ +GTRGYMAPE+ +     R+ER GYT A+D+WSLG T F+LL G RPFT P
Sbjct:  394 RRRTTVGTRGYMAPEIVSGKLMKRNERQGYTYAIDFWSLGVTMFELLCGFRPFTSP 449
[Close]
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Match: A0A7S1U415_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U415_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.280e-13
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   40 RRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWWSLGATTFKLLTGERPF 198
            RRRS+MGTRGYMAPEV ++     S R GYT+AVD+WSLG T +KLL G RPF
Sbjct:  373 RRRSIMGTRGYMAPEVLDLMSAV-SARKGYTQAVDFWSLGVTVYKLLCGTRPF 424
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171710 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIP8_9STRA1.110e-77100.00Protein kinase domain-containing protein n=1 Tax=T... [more]
D8LEF7_ECTSI4.670e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5J4_9PHAE4.730e-1666.67Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZAC1_9STRA2.240e-1559.38Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3UVF1_HETAK2.370e-1557.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FP09_ECTSI5.730e-1558.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIE1_9PHAE8.420e-1559.32Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S3GQ14_9STRA8.970e-1463.64Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A0P1B3D1_PLAHL3.260e-1360.71Agc protein kinase n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S1U415_9STRA8.280e-1366.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:442509..442841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171710|e_gw1.84.55.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04068,ko04151,map04068,map04151
KEGG koko:K13303
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0603@1|root,KOG0603@2759|Eukaryota
Evalue7.66e-17
Seed ortholog2880.D8LEF7
Hectar predicted targeting categoryother localisation
TranscriptId172032
TrackFilteredModels1
ProteinId171710
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171710gene_12134Tribonema minus UTEX_B_3156 geneContig_84 442509..442841 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12134_1exon_12134_1Tribonema minus UTEX_B_3156 exonContig_84 442509..442841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12134CDS_12134Tribonema minus UTEX_B_3156 CDSContig_84 442509..442841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171710Trimin1|171710|e_gw1.84.55.1Tribonema minus UTEX_B_3156 polypeptideContig_84 442509..442841 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12134 ID=mRNA_12134|Name=jgi.p|Trimin1|171710|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_84:442509..442841- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCATCACACTTTGCGCCGCGCGTCACGTCGTCGCAGGCGGCGCAG
CGTGATGGGAACGCGCGGCTACATGGCGCCCGAGGTGGCCAACATGGCGG
GCACGCCGCGCAGCGAGCGCGCCGGCTACACGCGCGCCGTCGACTGGTGG
TCGCTCGGCGCCACGACGTTCAAGCTGCTCACGGGCGAGCGCCCGTTCAC
GCGGCCGCGTAAGCGCGACGGCGGCGATGGGGATCGGCCGCAGCTGCGGC
GCTGCAACAGCGATCCGGAGCCGTCGCCGCCGCTGGTGTTCCCCTTCTTC
GTACTCCCAGATGCCAAGGTGCGTACTTGCTAA
back to top

protein sequence of jgi.p|Trimin1|171710

>Trimin1|171710|e_gw1.84.55.1 ID=Trimin1|171710|e_gw1.84.55.1|Name=jgi.p|Trimin1|171710|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
MCHHTLRRASRRRRRRSVMGTRGYMAPEVANMAGTPRSERAGYTRAVDWW
SLGATTFKLLTGERPFTRPRKRDGGDGDRPQLRRCNSDPEPSPPLVFPFF
VLPDAKVRTC*
back to top

mRNA from alignment at Contig_84:442509..442841-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12134 ID=mRNA_12134|Name=jgi.p|Trimin1|171710|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_84:442509..442841- (Tribonema minus UTEX_B_3156 )
ATGTGTCATCACACTTTGCGCCGCGCGTCACGTCGTCGCAGGCGGCGCAG
CGTGATGGGAACGCGCGGCTACATGGCGCCCGAGGTGGCCAACATGGCGG
GCACGCCGCGCAGCGAGCGCGCCGGCTACACGCGCGCCGTCGACTGGTGG
TCGCTCGGCGCCACGACGTTCAAGCTGCTCACGGGCGAGCGCCCGTTCAC
GCGGCCGCGTAAGCGCGACGGCGGCGATGGGGATCGGCCGCAGCTGCGGC
GCTGCAACAGCGATCCGGAGCCGTCGCCGCCGCTGGTGTTCCCCTTCTTC
GTACTCCCAGATGCCAAGGTGCGTACTTGCTAA
back to top

Coding sequence (CDS) from alignment at Contig_84:442509..442841-

>mRNA_12134 ID=mRNA_12134|Name=jgi.p|Trimin1|171710|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_84:442509..442841- (Tribonema minus UTEX_B_3156 )
ATGTGTCATCACACTTTGCGCCGCGCGTCACGTCGTCGCAGGCGGCGCAG
CGTGATGGGAACGCGCGGCTACATGGCGCCCGAGGTGGCCAACATGGCGG
GCACGCCGCGCAGCGAGCGCGCCGGCTACACGCGCGCCGTCGACTGGTGG
TCGCTCGGCGCCACGACGTTCAAGCTGCTCACGGGCGAGCGCCCGTTCAC
GCGGCCGCGTAAGCGCGACGGCGGCGATGGGGATCGGCCGCAGCTGCGGC
GCTGCAACAGCGATCCGGAGCCGTCGCCGCCGCTGGTGTTCCCCTTCTTC
GTACTCCCAGATGCCAAGGTGCGTACTTGCTAA
back to top