mRNA_12105 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136718
Unique NamemRNA_12105
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A835YK30_9STRA (Nucleotide-diphospho-sugar transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK30_9STRA)

HSP 1 Score: 381 bits (978), Expect = 5.280e-134
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1
Query:    1 VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVGSTVFMHGKFWQLLQEFP 552
            VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVGSTVFMHGKFWQLLQEFP
Sbjct:    1 VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVGSTVFMHGKFWQLLQEFP 184          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A835Z1V2_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V2_9STRA)

HSP 1 Score: 363 bits (933), Expect = 2.520e-126
Identity = 174/184 (94.57%), Postives = 179/184 (97.28%), Query Frame = 1
Query:    1 VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVGSTVFMHGKFWQLLQEFP 552
            VVVLVTPEISPAERALF QAGAIVTEVEKFT+PNP WPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPD ILDACPVGS+FCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVG+TVFMHGKFW+L + FP
Sbjct:   16 VVVLVTPEISPAERALFMQAGAIVTEVEKFTIPNPDWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDTILDACPVGSSFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVGTTVFMHGKFWELGERFP 199          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A836CFP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFP2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.920e-39
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDR 219
            VVVLVTPEISPAERALF QAGAIVTEVEKFT+PNP WPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQP +
Sbjct:   16 VVVLVTPEISPAERALFMQAGAIVTEVEKFTIPNPDWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPTQ 88          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A7S3PP17_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PP17_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.220e-11
Identity = 55/190 (28.95%), Postives = 83/190 (43.68%), Query Frame = 1
Query:    1 VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAY------NDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFNEASALRFDNKMRQCRVGSTVFMHGKFWQLLQEFP 552
            VVVLVTP +S   R +  + GA VT VE    P+ A  A       N   TKL +W+L QY +IVY+D+D VV S+   +         F A  D           N GV V+ P+M  F+ L +    +      D  +LN  ++N+ +L     + + L F    ++     T      +W  ++  P
Sbjct:   43 VVVLVTPNVSKVTRVILKRTGATVTTVESIENPHLASNANANSNWTNCGFTKLRIWSLTQYDKIVYIDADCVVLSEISNLFTVDLGSIGFAAAPDIFP----PDCFNAGVLVICPSMVTFKNLVSEIDVLRSYDGGDTGFLNAYFNNWFNL----GKENRLDFSYNAQRTMHWMTHSKQPGYWNSVENRP 224          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A433DBV3_9FUNG (Glycosyl transferase family 64 domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DBV3_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 9.420e-11
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVA-----TKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYT 429
            +V+LV P +S   R      GA + E+E+   P  A  A   +      +KLH+W L  Y +I+YLD+D +V  + D + D       F AV+D G         NTGVFV++P+ + F  + +         + DQ +LN  Y N+T
Sbjct:  103 IVLLVLPYVSEDSRQELITLGAKIVEIEEVPFPFNATQANKGINKSCRYSKLHLWELTDYDKIIYLDADTMVVEKIDELFDF----PEFSAVMDMGTT------MNTGVFVMEPSKATFNRMMSVYLGAPSYNHGDQGFLNW-YFNFT 239          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: F0W520_9STRA (Glycosyl transferase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W520_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.220e-10
Identity = 51/144 (35.42%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    4 VVLVTPEISPAERALFTQAGAIVTEVEKFTVP--NPAWPAYNDVAT--KLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSN 423
            VVLV+  ++ A + LF   G  V EV   T P  N      N + T  KLHVW LL+Y R+VYLD+D +V    D +    P    FCAV     +       +TG+ VV P+   +Q L       +    ADQ +L+ +YSN
Sbjct:   84 VVLVSESVTLATKKLFRDIGCRVLEVVDITNPFLNHTLKNQNFIHTLNKLHVWNLLEYDRVVYLDADNIVLRNADELFMCGP----FCAVFMNPCH------FHTGLLVVTPDKEEYQRLLHQLEYQSSFDGADQGFLSSVYSN 217          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: UPI001F5C10BF (galactinol synthase 1-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C10BF)

HSP 1 Score: 68.9 bits (167), Expect = 1.320e-10
Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 1
Query:    4 VVLVTPEISPAERALFTQAGAIVTEVEKFTVPNP----AWPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACP-----VGSTFCAVLDQGQNGEREGFC--------NTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSN-YTHLDDRFNEASALRFDNKMRQCRVGSTVFMH-----GKFWQLLQEFP 552
            VV V P++  A R      G +V +V+    P      AW  Y    +KL +W L++Y R+VYLD+D+ V    D + D  P     V   FC      Q  +R  F         N GVFV +P+++  + L    +      +A+QD+LN  + N Y  +   +N   A+ + +      +G    +H      K W+   E P
Sbjct:   49 VVAVLPDVPEAHRRALLDQGCLVRDVQPVYPPESRTKFAWAYYVINYSKLRIWELVEYDRMVYLDADVQVYENIDHLFDLEPGHLYAVRDCFCEGTWSEQCRDRVAFWPEPPPLYFNAGVFVHEPSLATAEALLDKLAVTEPTAFAEQDFLNTFFRNVYKPIPPAYNLLLAMLWRHP-ESVDLGKAKVVHYCAQGSKPWRFTGEEP 253          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A6A7C1E5_9PEZI (Glycosyltransferase family 8 protein (Fragment) n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7C1E5_9PEZI)

HSP 1 Score: 68.2 bits (165), Expect = 4.240e-10
Identity = 45/124 (36.29%), Postives = 60/124 (48.39%), Query Frame = 1
Query:   70 VTEVEKFTVPNPA------WPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSN 423
            V  V++ + P PA       P      TKL++W L+Q+ +IVY+D+D+V    PD + D       F AV D G         NTGV V+ PNM  +  L A  SA      ADQ  LNQ Y +
Sbjct:   57 VIPVDRQSTPRPANLYVMNRPDLLFTFTKLNLWKLVQFRKIVYIDADVVALRAPDELFDT---PEAFAAVSDVGW----PDIFNTGVMVITPNMGEYHALQAMASAGDSFDGADQGLLNQYYEH 173          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: A0A1U7LP82_NEOID (Glycogenin-1 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LP82_NEOID)

HSP 1 Score: 67.8 bits (164), Expect = 5.800e-10
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  112 PAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFN 450
            P      TKL VW   Q+S+IVY+D+D+V    PD + D   +   F A  D G     + F N+GVF+ +P+ + F  LNA   A      ADQ  LNQ ++N+T +   +N
Sbjct:   77 PDLRPAFTKLRVWQQTQFSKIVYIDADVVALRNPDDLFD---LDCDFAAAPDSGWP---DSF-NSGVFLTKPSETTFHILNALAEAGVSFDGADQGLLNQHFTNWTRISFAYN 182          
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Match: M2MUH2_BAUPA (Glycosyltransferase family 8 protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2MUH2_BAUPA)

HSP 1 Score: 67.4 bits (163), Expect = 8.040e-10
Identity = 44/124 (35.48%), Postives = 59/124 (47.58%), Query Frame = 1
Query:   70 VTEVEKFTVPNPA------WPAYNDVATKLHVWTLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFCNTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSN 423
            V  +E+   P+PA       P      TK+H+W + Q+ +IVY+DSD+V    PD + D   V   F A  D G         NTGV V+ PNM  +  L +  SA      ADQ  LNQ Y +
Sbjct:   61 VIPIERIGNPSPANLYLMGRPDLLYTFTKIHLWRMTQFRKIVYIDSDVVALRAPDELFD---VTEGFAAAPDVGW----PDIFNTGVMVIAPNMGEYHALRSMASAGDSFDGADQGLLNQYYEH 177          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK30_9STRA5.280e-134100.00Nucleotide-diphospho-sugar transferase (Fragment) ... [more]
A0A835Z1V2_9STRA2.520e-12694.57Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A836CFP2_9STRA2.920e-3993.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3PP17_9STRA5.220e-1128.95Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A433DBV3_9FUNG9.420e-1131.76Glycosyl transferase family 64 domain-containing p... [more]
F0W520_9STRA1.220e-1035.42Glycosyl transferase putative n=1 Tax=Albugo laiba... [more]
UPI001F5C10BF1.320e-1027.18galactinol synthase 1-like n=2 Tax=Lolium rigidum ... [more]
A0A6A7C1E5_9PEZI4.240e-1036.29Glycosyltransferase family 8 protein (Fragment) n=... [more]
A0A1U7LP82_NEOID5.800e-1036.28Glycogenin-1 n=1 Tax=Neolecta irregularis (strain ... [more]
M2MUH2_BAUPA8.040e-1035.48Glycosyltransferase family 8 protein n=1 Tax=Baudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:159028..159579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136718|gw1.84.29.1
CAZyGT8
BRITEko00000,ko00001,ko01000,ko01003
KEGG rclassRC00005,RC00171
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K00750
EC2.4.1.186
Descriptionglycogenin glucosyltransferase activity
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5597@1|root,KOG1950@2759|Eukaryota
Evalue2e-11
Seed ortholog653948.CCA16211
Hectar predicted targeting categoryother localisation
TranscriptId137040
TrackFilteredModels1
ProteinId136718
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136718gene_12105Tribonema minus UTEX_B_3156 geneContig_84 159028..159579 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12105_1exon_12105_1Tribonema minus UTEX_B_3156 exonContig_84 159028..159579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12105CDS_12105Tribonema minus UTEX_B_3156 CDSContig_84 159028..159579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136718Trimin1|136718|gw1.84.29.1Tribonema minus UTEX_B_3156 polypeptideContig_84 159028..159579 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12105 ID=mRNA_12105|Name=jgi.p|Trimin1|136718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_84:159028..159579- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAGTGGTGCTCGTGACCCCAGAGATATCGCCAGCGGAGCGGGCGCTGTT
CACGCAAGCGGGCGCGATCGTCACGGAGGTGGAGAAGTTCACGGTGCCGA
ATCCGGCGTGGCCAGCATACAACGATGTGGCCACCAAGCTCCACGTCTGG
ACACTGTTACAGTACTCTCGCATCGTTTATTTGGACTCCGACATCGTCGT
CTGCAGCCAGCCCGACAGAATCCTCGATGCGTGCCCGGTGGGATCTACTT
TCTGTGCAGTATTGGATCAGGGGCAAAATGGAGAACGCGAGGGTTTTTGC
AACACCGGCGTCTTTGTGGTACAGCCCAACATGAGCGTTTTCCAAGAGCT
GAATGCCAACAAGAGCGCCATGGCAGATTTGAGGTATGCAGACCAGGACT
GGCTCAATCAGATCTACAGCAATTACACACACCTGGATGACAGGTTTAAT
GAGGCATCGGCCCTGCGTTTCGATAATAAGATGCGCCAGTGCAGGGTCGG
CAGCACCGTGTTCATGCATGGCAAGTTCTGGCAGCTGCTGCAGGAATTTC
CG
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protein sequence of jgi.p|Trimin1|136718

>Trimin1|136718|gw1.84.29.1 ID=Trimin1|136718|gw1.84.29.1|Name=jgi.p|Trimin1|136718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp
VVVLVTPEISPAERALFTQAGAIVTEVEKFTVPNPAWPAYNDVATKLHVW
TLLQYSRIVYLDSDIVVCSQPDRILDACPVGSTFCAVLDQGQNGEREGFC
NTGVFVVQPNMSVFQELNANKSAMADLRYADQDWLNQIYSNYTHLDDRFN
EASALRFDNKMRQCRVGSTVFMHGKFWQLLQEFP
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mRNA from alignment at Contig_84:159028..159579-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12105 ID=mRNA_12105|Name=jgi.p|Trimin1|136718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_84:159028..159579- (Tribonema minus UTEX_B_3156 )
GTAGTGGTGCTCGTGACCCCAGAGATATCGCCAGCGGAGCGGGCGCTGTT CACGCAAGCGGGCGCGATCGTCACGGAGGTGGAGAAGTTCACGGTGCCGA ATCCGGCGTGGCCAGCATACAACGATGTGGCCACCAAGCTCCACGTCTGG ACACTGTTACAGTACTCTCGCATCGTTTATTTGGACTCCGACATCGTCGT CTGCAGCCAGCCCGACAGAATCCTCGATGCGTGCCCGGTGGGATCTACTT TCTGTGCAGTATTGGATCAGGGGCAAAATGGAGAACGCGAGGGTTTTTGC AACACCGGCGTCTTTGTGGTACAGCCCAACATGAGCGTTTTCCAAGAGCT GAATGCCAACAAGAGCGCCATGGCAGATTTGAGGTATGCAGACCAGGACT GGCTCAATCAGATCTACAGCAATTACACACACCTGGATGACAGGTTTAAT GAGGCATCGGCCCTGCGTTTCGATAATAAGATGCGCCAGTGCAGGGTCGG CAGCACCGTGTTCATGCATGGCAAGTTCTGGCAGCTGCTGCAGGAATTTC CG
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Coding sequence (CDS) from alignment at Contig_84:159028..159579-

>mRNA_12105 ID=mRNA_12105|Name=jgi.p|Trimin1|136718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=552bp|location=Sequence derived from alignment at Contig_84:159028..159579- (Tribonema minus UTEX_B_3156 )
GTAGTGGTGCTCGTGACCCCAGAGATATCGCCAGCGGAGCGGGCGCTGTT
CACGCAAGCGGGCGCGATCGTCACGGAGGTGGAGAAGTTCACGGTGCCGA
ATCCGGCGTGGCCAGCATACAACGATGTGGCCACCAAGCTCCACGTCTGG
ACACTGTTACAGTACTCTCGCATCGTTTATTTGGACTCCGACATCGTCGT
CTGCAGCCAGCCCGACAGAATCCTCGATGCGTGCCCGGTGGGATCTACTT
TCTGTGCAGTATTGGATCAGGGGCAAAATGGAGAACGCGAGGGTTTTTGC
AACACCGGCGTCTTTGTGGTACAGCCCAACATGAGCGTTTTCCAAGAGCT
GAATGCCAACAAGAGCGCCATGGCAGATTTGAGGTATGCAGACCAGGACT
GGCTCAATCAGATCTACAGCAATTACACACACCTGGATGACAGGTTTAAT
GAGGCATCGGCCCTGCGTTTCGATAATAAGATGCGCCAGTGCAGGGTCGG
CAGCACCGTGTTCATGCATGGCAAGTTCTGGCAGCTGCTGCAGGAATTTC
CG
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