mRNA_12104 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A835YM08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM08_9STRA) HSP 1 Score: 519 bits (1337), Expect = 1.360e-183 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1
Query: 1 MKSRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWITN 780
MKSRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWITN
Sbjct: 1 MKSRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWITN 260
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: D7FL76_ECTSI (Tropinone reductase, putative / tropine dehydrogenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL76_ECTSI) HSP 1 Score: 321 bits (823), Expect = 7.580e-105 Identity = 163/266 (61.28%), Postives = 201/266 (75.56%), Query Frame = 1
Query: 4 KSRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEA--------QGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWIT 777
++RW L+G+ A+VTGGTKGIG AIV ELA LGA+V TC+R+ AD+ CL EW+++GL V G+ ADV++AE R +L++ E FGG LDILVNNVGT+IR+ATVDYT EE +V+ NF S F + +L HPLLK A GG SV+NI SVAG+T IKSG+PYAASKAAM++VT+ CEWA DGIRVN VAPWYT TPL PV D ++ EI RTPMKR A+A+EVS +VAFLCM+GA YIT QV+ DGGFT NGW+T
Sbjct: 42 RARWSLEGKTAVVTGGTKGIGKAIVEELACLGAKVITCSRNPADVAACLEEWKSKGLLVEGTAADVTTAEGRESLVKLAEEHFGGLLDILVNNVGTNIRKATVDYTPEELAYVMDTNFTSLFLLTKLLHPLLKAAAAVKGSRENGGSSVINISSVAGITPIKSGSPYAASKAAMNQVTRLWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADPVRVNEITQRTPMKRWADADEVSGMVAFLCMKGAGYITSQVIATDGGFTANGWMT 307
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A3S3QA70_9MAGN (Tropinone reductase-like protein isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3QA70_9MAGN) HSP 1 Score: 296 bits (758), Expect = 1.760e-95 Identity = 145/254 (57.09%), Postives = 190/254 (74.80%), Query Frame = 1
Query: 10 RWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
RW L+G ALVTGGT+GIGNA+V ELA +GA ++TC+R++ +L +CL +W G +V GSV D+SS R L++KV FGG L+IL+NNVGT+IR+ T+DYT E+ V+ NF S + ++QL HPLLK A G GS+V+I SV GV +I+SGT YAA+K AM+++T+N ACEWA D IR NCVAPWY T L +FEDK E++SRTP++RI E +EVS+LVAFLC+ ASYITGQV+ VDGG T NG+
Sbjct: 19 RWSLNGATALVTGGTRGIGNAVVEELAEMGACIHTCSRNETELDRCLQQWEGLGFRVTGSVCDLSSRPQREQLMEKVSSIFGGKLNILINNVGTNIRKPTIDYTDEDFTRVMTTNFESAYHLVQLAHPLLK-ASGMGSIVSISSVGGVVAIRSGTIYAATKGAMNQLTKNLACEWAKDNIRANCVAPWYIKTSLVEHMFEDKQFTEEVISRTPLRRIGEPKEVSSLVAFLCLPAASYITGQVISVDGGMTVNGF 271
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: W7UA18_9STRA (Tropinone reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA18_9STRA) HSP 1 Score: 292 bits (747), Expect = 5.760e-94 Identity = 144/255 (56.47%), Postives = 185/255 (72.55%), Query Frame = 1
Query: 7 SRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
+RWRLDGQ L TGGTKGIG AIV E A LGA V+TCARS +DL CL EW A+G +V G DVS ++ R A++++V +F G LD+LVNNVGT+IR+ T YT ++ + ++ +N S + + QL HPLLK+A G G V+N+GSVAGV IKSG+ Y +KAAM ++++N ACEWA DGIRVN VAPWY TPL + V D + E+ RTPMKR+ +EE+S + AFL M G+SYITGQ VCVDGGFT NG+
Sbjct: 12 ARWRLDGQTVLCTGGTKGIGKAIVEEFASLGARVFTCARSASDLAACLKEWTAKGYEVEGIAVDVSDSDARRAMMEQVAGSFVGRLDVLVNNVGTNIRKPTAQYTEDQYDKIMDINLKSTYHLCQLAHPLLKKA-GKGCVINVGSVAGVIGIKSGSVYGLTKAAMVQLSKNLACEWASDGIRVNTVAPWYIETPLTAQVLGDPVYRKEVEDRTPMKRVGSSEEISGICAFLAMSGSSYITGQTVCVDGGFTVNGF 265
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A7S0G8Q1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8Q1_9STRA) HSP 1 Score: 291 bits (745), Expect = 2.400e-93 Identity = 158/268 (58.96%), Postives = 189/268 (70.52%), Query Frame = 1
Query: 1 MKSRWRLD-GQKALVTGGTKGIGNAIVVELAH-LGAEVYTCARSDADLQQCLAEWR-AQGLKVHGSVADVSSAEDRAALLQKVGEAFGGS-----LDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGG---SVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
+ SRW L G A+VTGGTKGIG+AIV ELA V TC+RS DL++C+++WR Q L VHG VADVS+ E R LL K E FG LDILVNNVGT+IR+ TVDYT EE E +L NF S F M +LC+PLLK + G SVVNIGSVAGVT IKSGTPYAA+KAAM++ T N ACEW D IRVNCV PWY NTPLA V +D+ +L RTP R+ E +EVS+LVAFLC+ A +ITGQ++ VDGGFT+NG+
Sbjct: 15 LPSRWNLPIGSSAIVTGGTKGIGHAIVTELASTFKCRVLTCSRSSDDLEKCISQWRDEQSLDVHGVVADVSTKEGRETLLLKANELFGSGGEDCELDILVNNVGTNIRKKTVDYTEEELEFILGTNFKSMFEMSKLCYPLLKRTKESGKTSSVVNIGSVAGVTCIKSGTPYAATKAAMNQFTGNLACEWGPDNIRVNCVTPWYINTPLAKQVLKDEAFKRSVLERTPAGRVGEPDEVSSLVAFLCLPCAGFITGQIISVDGGFTRNGF 282
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: H9BQR9_DENNO (Tropinone reductase II (Fragment) n=2 Tax=Dendrobium TaxID=37818 RepID=H9BQR9_DENNO) HSP 1 Score: 290 bits (743), Expect = 2.830e-93 Identity = 144/254 (56.69%), Postives = 187/254 (73.62%), Query Frame = 1
Query: 10 RWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
RW L+G ALVTGGT+GIGNA+V ELA LGA VYTC+R +++L CL +W GL+V GS+ D+S E R L+QKV AF G L+IL+NNVGT+IR+ TVDY+ E+ +++ NF + F + QL HPLLK A G GS+V I SVAGV +I SG YAA+KAAM+++T+N ACEWA D IR+N V+PWY T L + + E + ++SRTP+ R+ EAEEVS+LVAFLCM ASYITGQ++ VDGG T NG+
Sbjct: 14 RWSLEGMTALVTGGTRGIGNAVVEELAELGAVVYTCSRKESELNDCLKKWEGLGLRVSGSICDLSVREQRVDLIQKVSSAFDGKLNILINNVGTNIRKPTVDYSEEDYSFIMKTNFDAAFHICQLAHPLLK-ASGNGSIVFISSVAGVVAISSGVIYAATKAAMNQITKNLACEWAKDNIRINSVSPWYIKTSLVNHLLEKENFLNSVVSRTPLNRVGEAEEVSSLVAFLCMPCASYITGQIISVDGGMTVNGF 266
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A1S3TPU4_VIGRR (tropinone reductase homolog At5g06060 n=5 Tax=Vigna TaxID=3913 RepID=A0A1S3TPU4_VIGRR) HSP 1 Score: 290 bits (741), Expect = 5.480e-93 Identity = 147/256 (57.42%), Postives = 186/256 (72.66%), Query Frame = 1
Query: 7 SRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWI 774
SRW L G ALVTGGT+GIG+A+V ELA GA VYTC+R + +L CL EW+ +G V GSV D SS R L+++V AF G+L+ILVNNVGT++R+ T++YT+EE ++ N S + + QL HPLLK A G GS+V I SVAG SI SG YA++KAAM ++T+ ACEWA D IR N VAPWYT TPLA + +K E++SRTP+KRIAEA EVS+LV FLC+ ASYITGQV+CVDGGFT NG++
Sbjct: 11 SRWSLKGTTALVTGGTRGIGHAVVEELAEFGANVYTCSRKEEELNACLKEWKEKGFSVSGSVCDASSPAQRENLIKQVASAFNGTLNILVNNVGTNVRKPTIEYTTEEYSKLMATNLDSAYHLSQLAHPLLK-ASGNGSIVFISSVAGQRSIGSGAIYASTKAAMDQLTKYLACEWAKDNIRSNSVAPWYTKTPLAEALLANKEFVNEVISRTPIKRIAEAHEVSSLVTFLCLPAASYITGQVICVDGGFTVNGFL 265
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A2K3NES8_TRIPR (Tropinone reductase-like protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NES8_TRIPR) HSP 1 Score: 290 bits (741), Expect = 5.860e-93 Identity = 143/254 (56.30%), Postives = 188/254 (74.02%), Query Frame = 1
Query: 10 RWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
RW L G ALVTGGT+GIG+AIV +LA GA V+TC+R++++L +CL EW+ QG V GSV DVSS R L+Q+V F G L+I +NNVGT+ R+ T+DYT+EE ++ +N S F + QL HPLLKE++ GGS+V I SVAGV S+ +G YAASKAA++++T+N ACEWA DGIR NCV PW T TPL + +++ +I++RTP+KRIAE EEVS+LV FLC+ ASYITGQV+CVDGG T G+
Sbjct: 13 RWSLTGMTALVTGGTRGIGHAIVNDLAAFGATVHTCSRTESELNKCLKEWQTQGFLVTGSVCDVSSRPQRENLVQQVSSTFNGKLNIFINNVGTNFRKPTIDYTAEEYSELMTINLDSAFHLSQLTHPLLKESRVGGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDGIRSNCVVPWATRTPLVEHLLQNQKFVDDIMARTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGF 266
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A2I4ER63_JUGRE (tropinone reductase homolog At5g06060-like n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4ER63_JUGRE) HSP 1 Score: 289 bits (740), Expect = 8.020e-93 Identity = 145/255 (56.86%), Postives = 190/255 (74.51%), Query Frame = 1
Query: 7 SRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
+RW L G+ ALVTGGT+GIG+A+V ELA GA VYTC+R++A+L +CL EW +G V GSV D SS R LL++V F G L+IL+NNVGT+IR+ T++YT+EE ++ NF S + + Q+ HPLLK A G GS+V I SVAG+ SI SG+ YAASKAA++++T+N ACEWA D IR NCVAPWYT T L + E+K EI+S+TP++R+AEAEE+S+LVAFLC+ ASYITGQ + VDGG T NG+
Sbjct: 12 ARWSLKGKTALVTGGTRGIGHAVVEELAGFGASVYTCSRNEAELGKCLKEWEGKGFVVSGSVCDASSRAHRERLLEQVASVFNGKLNILINNVGTNIRKPTIEYTAEEYSTLMATNFESTYHLCQIAHPLLK-ASGMGSIVFISSVAGLVSIGSGSIYAASKAAINQLTKNLACEWAKDNIRTNCVAPWYTRTSLVEHLLENKKILEEIVSKTPLQRVAEAEELSSLVAFLCLPAASYITGQTISVDGGMTANGF 265
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Match: A0A087G546_ARAAL (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087G546_ARAAL) HSP 1 Score: 289 bits (739), Expect = 8.130e-93 Identity = 143/254 (56.30%), Postives = 187/254 (73.62%), Query Frame = 1
Query: 10 RWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGW 771
RW L G+ ALVTGGT+GIG A+V ELA GA+VYTC+R++ +L+ CLA+W++ GL V+GSV D S + R L+Q+V F G L+ILVNNVGT+IR+ TVDY+SEE ++ N S F + QL HPLLK A G GSVV I SVAG+ +++G+ Y A+K A++++T+N ACEWAGD IR NCVAPWY T L P+ E K ++SRTP+ R+ E EEVS+LVAFLC+ +SYITGQV+ VDGGFT NG+
Sbjct: 6 RWSLAGKTALVTGGTRGIGRAVVEELARFGAKVYTCSRNEEELKACLADWKSNGLVVYGSVCDASVKDQREQLMQEVSAMFSGKLNILVNNVGTNIRKPTVDYSSEEYAKIMSTNLESAFHLSQLAHPLLK-ASGVGSVVFISSVAGLVHVRTGSIYGATKGALNQLTRNLACEWAGDNIRTNCVAPWYIKTSLVEPLLEKKDFVEAVVSRTPLGRVGEPEEVSSLVAFLCLPASSYITGQVISVDGGFTVNGF 258 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351241 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12104 ID=mRNA_12104|Name=jgi.p|Trimin1|351241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1241bp|location=Sequence derived from alignment at Contig_84:149902..157432- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAGAGCAGATGGCGATTGGACGGCCAAAAGGCACTGGTTACGGGGGGback to top protein sequence of jgi.p|Trimin1|351241 >Trimin1|351241|estExt_Genemark1.C_Ctg_840025 ID=Trimin1|351241|estExt_Genemark1.C_Ctg_840025|Name=jgi.p|Trimin1|351241|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=261bp MKSRWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLback to top mRNA from alignment at Contig_84:149902..157432- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12104 ID=mRNA_12104|Name=jgi.p|Trimin1|351241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7531bp|location=Sequence derived from alignment at Contig_84:149902..157432- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_84:149902..157432- >mRNA_12104 ID=mRNA_12104|Name=jgi.p|Trimin1|351241|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=783bp|location=Sequence derived from alignment at Contig_84:149902..157432- (Tribonema minus UTEX_B_3156 )back to top |