mRNA_12103 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|94611
Unique Name	mRNA_12103
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A835YRY8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY8_9STRA)

HSP 1 Score: 489 bits (1258), Expect = 1.360e-172
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 3

Query:   54 MLLLKYVLPLVVLATVGAFTLGPSLRGLANSSAVRMAAESGSAGMDRRQFVHDAAVGAAAGVGVAAAPKGAFAEGDPKVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 812
            MLLLKYVLPLVVLATVGAFTLGPSLRGLANSSAVRMAAESGSAGMDRRQFVHDAAVGAAAGVGVAAAPKGAFAEGDPKVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI
Sbjct:    1 MLLLKYVLPLVVLATVGAFTLGPSLRGLANSSAVRMAAESGSAGMDRRQFVHDAAVGAAAGVGVAAAPKGAFAEGDPKVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 253

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A6H5KLT5_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLT5_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 2.280e-75
Identity = 117/175 (66.86%), Postives = 139/175 (79.43%), Query Frame = 3

Query:  288 VQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 812
            V+F V+L+  + G+FV++V PDWAP GAARF  L  + FF D RFFRVLKGFVAQFGI+GDP V AK+R + ++DDPVTQSNKRGTVVFAT+G N+RT+QLFINFGDN FLDK GFSPIG +V GMD  D LY  YGEGAP+G GP+Q  IQS+GNAYLK  FP LSYI +A  +
Sbjct:  100 VKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSATSV 274

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A5C5X4P5_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X4P5_9PLAN)

HSP 1 Score: 241 bits (614), Expect = 3.660e-75
Identity = 115/173 (66.47%), Postives = 136/173 (78.61%), Query Frame = 3

Query:  285 KVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA 803
            KV+F+       +G FV++VHPDWAPKGA RF ELV++ F+ DVRFFRV+ GF+AQFGISGDP+V AKWR S I DDP  QSN RG + +A AG NTRTSQLFINFGDN+FLD  GFSP GE+VEGM+ VDSLYA+YGEGAP G+GP+Q  IQ  GNAYL +KFP L YI +A
Sbjct:   61 KVKFETS-----KGDFVVEVHPDWAPKGAERFRELVEAKFYDDVRFFRVIDGFMAQFGISGDPEVMAKWRDSPIPDDPNKQSNTRGRITYAMAGPNTRTSQLFINFGDNSFLDNQGFSPFGEVVEGMEVVDSLYAEYGEGAPSGRGPNQGRIQQEGNAYLNEKFPKLDYIKSA 228

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A7S2CBJ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBJ7_9STRA)

HSP 1 Score: 236 bits (602), Expect = 7.500e-73
Identity = 132/246 (53.66%), Postives = 153/246 (62.20%), Query Frame = 3

Query:   75 LPLVVLATVGAFTLGPSLRGLAN--SSAVRMAAESGSAGMDRRQFVHDAAVGAAAGVGVAAAPKGAFAEGDP-KVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA 803
            L L   A   A    P+  G A   +SA  M AES + G   R     A  GA A  G  A    A AE +   V F +    G  G  V++VHP+WAP GA RF ELV +  F + RFFRVL GF+AQFGISGDP VSAKWR   +RDDPV  SNKRGT+ FAT G NTRTSQ+F N+GDN FLD+ GFSP G +  GMD V+ LY+ YGEGAP GKGP+Q  IQ  GNAYLK+ FP LSYI  A
Sbjct:   21 LMLAAFAAAPASAFAPAWAGQARRTASATTMTAESSADGQQLRVDRRSAVSGAVAAAGALALSSPARAEAETFDVTFDIVNEDGTGGAVVIEVHPEWAPLGAERFKELVSTGTFDENRFFRVLPGFIAQFGISGDPAVSAKWRGQNLRDDPVKVSNKRGTLTFATGGPNTRTSQIFFNYGDNQFLDRQGFSPFGTVKSGMDIVEKLYSGYGEGAPSGKGPNQGKIQKDGNAYLKESFPKLSYIKKA 266

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A517QVD7_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QVD7_9PLAN)

HSP 1 Score: 226 bits (576), Expect = 2.910e-70
Identity = 104/170 (61.18%), Postives = 130/170 (76.47%), Query Frame = 3

Query:  294 FQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA 803
            +QV+    K G F ++VHP+WAP GAA+F E+V+   F + RFFRV++GF+ QFGI+GDP VSAKWR   I+DDP TQSN RG + FATAG NTRTSQ+FINFGDN+FLD  GF+P G++ EGM+ VD+LYA YGEGAP+G+GP Q  +QS+GN YLK  FP L YI  A
Sbjct:    2 YQVKFETSK-GDFTVEVHPEWAPLGAAQFKEIVEDGVFNEARFFRVIEGFMVQFGIAGDPAVSAKWRNKQIKDDPTTQSNTRGMITFATAGPNTRTSQVFINFGDNSFLDNQGFAPFGKVTEGMEVVDALYAGYGEGAPQGRGPGQGQVQSKGNEYLKADFPELDYIKQA 170

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A7S1XNT1_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNT1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 8.080e-70
Identity = 107/185 (57.84%), Postives = 138/185 (74.59%), Query Frame = 3

Query:  249 AAPKGAFAEGDPKVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA 803
            AAP GA  +   +V+F V ++P ++G F+++VHP WAP GAARF EL+D++F+  VRFFRV+  F+AQFGI GDP+V  +WR   I DDPV QSN+RGT+ FA+AG  TRT+Q+FINF DN  LDKMGFSP  ++ EGMDTVD +YA YGEGAP G+GP Q+     GN YL+ +FP LSYI +A
Sbjct:   18 AAPAGADGDDSYRVKFTVAVSPTEKGDFILEVHPAWAPLGAARFKELLDANFYEGVRFFRVINHFMAQFGIHGDPRVGDQWRGKKIEDDPVLQSNRRGTISFASAGPGTRTTQMFINFVDNRRLDKMGFSPFAQVTEGMDTVDRIYAGYGEGAPSGRGPRQSKCHKLGNEYLEKEFPKLSYIISA 202

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A7V3M6K3_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A7V3M6K3_9BACT)

HSP 1 Score: 224 bits (572), Expect = 1.980e-69
Identity = 107/171 (62.57%), Postives = 134/171 (78.36%), Query Frame = 3

Query:  291 QFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA 803
            +F+V+    K G F ++V+ DW+P GA RF  L  + FFTD+ FFRVLKGFVAQFGI G+P++SA WR++ I DD V +SN+RGT+ FATAG NTRT+QLFIN+ DN+ LD MGFSPIG+++EGMD VDSLY+DYGEGAP G GPDQ  IQ+ GN+YLK  FPNL YI +A
Sbjct:   17 KFKVKFHTTK-GDFTIEVNRDWSPNGAERFYNLTKAGFFTDIAFFRVLKGFVAQFGIYGEPEISALWRSANIEDDQVKESNQRGTISFATAGPNTRTTQLFINYRDNSRLDGMGFSPIGKVIEGMDVVDSLYSDYGEGAPYGNGPDQGKIQTNGNSYLKKNFPNLDYILSA 186

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A5B8XYI3_9DELT (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Bradymonadales bacterium V1718 TaxID=2600177 RepID=A0A5B8XYI3_9DELT)

HSP 1 Score: 224 bits (570), Expect = 3.470e-69
Identity = 108/171 (63.16%), Postives = 134/171 (78.36%), Query Frame = 3

Query:  291 QFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA 803
            Q++V+    K GTF ++V+ DWAP+GA RF  LV   FF D+ FFRVL+GFVAQFGI G+P+V  KWR + I+DD V QSN RGT+VFATAG NTRT+QLFINFG+NA LD+MGFSP G++V GM+ VDSLY +YGEGAPRG+GPDQ  IQ  GNAYLK+ FP+L ++  A
Sbjct:   13 QYKVKFDTTK-GTFEVEVYRDWAPQGADRFYNLVKIGFFNDIAFFRVLEGFVAQFGIHGNPKVMEKWREARIQDDAVKQSNARGTLVFATAGPNTRTTQLFINFGNNANLDQMGFSPFGKVVSGMEVVDSLYKEYGEGAPRGRGPDQGRIQREGNAYLKEMFPDLDFVKTA 182

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A7S4N876_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N876_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.830e-68
Identity = 105/179 (58.66%), Postives = 141/179 (78.77%), Query Frame = 3

Query:  285 KVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDS--DFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDT-VDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 812
            +V+FQV+L+   +G+F + VHP W+P+GA RFLELVD    F+  +RFFRV++GF+AQFGI G P+V+A+W+   ++DDPV +SNKRG V FAT+G ++RT+Q+FIN  DNA LD MGFSP  E+VEGM+T VDS+++ YGEGAP G+GPDQ+ IQS GN YLK  FPNLSY+ + KR+
Sbjct:   98 RVEFQVQLSHSTEGSFTLAVHPSWSPRGAERFLELVDEGDSFWKGIRFFRVIEGFMAQFGIPGKPEVAAEWKEKTLKDDPVKESNKRGFVSFATSGKDSRTTQMFINLADNANLDGMGFSPFAEVVEGMETTVDSIHSGYGEGAPSGRGPDQSRIQSEGNRYLKRNFPNLSYVKSVKRL 276

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BLAST of jgi.p|Trimin1|94611 vs. uniprot
Match: A0A1Z5JW45_FISSO (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW45_FISSO)

HSP 1 Score: 224 bits (571), Expect = 3.900e-68
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 3

Query:  300 VELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAK 806
            +E  P K G   +Q+ P WAP+G ARF+EL  + FF D R FRVL GFVAQFGI G+P + A+WR+ ++ DDPV  SN RGTVVFATAG N+RT+QLFIN  DN+FLDK GFSPIG+++ GMD VD  YA YGEGAPRG GP+Q  IQ RGNAYL+  +P LSYI++ K
Sbjct:  101 LEGDPSKSGVIQLQLEPSWAPRGVARFMELTGNQFFKDCRIFRVLPGFVAQFGIQGNPSIQAEWRSKSLLDDPVKVSNSRGTVVFATAGPNSRTTQLFINTADNSFLDKQGFSPIGKVISGMDVVDKFYAGYGEGAPRGPGPNQGMIQMRGNAYLESTYPKLSYISSIK 269

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|94611 vs. uniprot

BLAST of jgi.p|Trimin1|94611 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YRY8_9STRA	1.360e-172	100.00	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon...	[more]
A0A6H5KLT5_9PHAE	2.280e-75	66.86	Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=...	[more]
A0A5C5X4P5_9PLAN	3.660e-75	66.47	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas...	[more]
A0A7S2CBJ7_9STRA	7.500e-73	53.66	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren...	[more]
A0A517QVD7_9PLAN	2.910e-70	61.18	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas...	[more]
A0A7S1XNT1_9STRA	8.080e-70	57.84	Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeom...	[more]
A0A7V3M6K3_9BACT	1.980e-69	62.57	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusim...	[more]
A0A5B8XYI3_9DELT	3.470e-69	63.16	Peptidyl-prolyl cis-trans isomerase n=2 Tax=Bradym...	[more]
A0A7S4N876_9STRA	2.830e-68	58.66	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Odonte...	[more]
A0A1Z5JW45_FISSO	3.900e-68	61.54	Peptidyl-prolyl cis-trans isomerase n=2 Tax=Fistul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_84	contig	Contig_84:143479..149424 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|94611\|CE94610_202
Description	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
COG category	O
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0652@1\|root,2S3DM@2759\|Eukaryota
Evalue	2.06e-69
Seed ortholog	2880.D8LSI0
Hectar predicted targeting category	chloroplast
Ec32 ortholog description	Peptidyl-prolyl cis-trans isomerase, cyclophilin type
Ec32 ortholog	Ec-09_001710.1
TranscriptId	94933
Track	FilteredModels1
ProteinId	94611

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|94611	gene_12103	Tribonema minus UTEX_B_3156	gene	Contig_84 143479..149424 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|94611	Trimin1\|94611\|CE94610_202	Tribonema minus UTEX_B_3156	polypeptide	Contig_84 143740..149371 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12103_5	exon_12103_5	Tribonema minus UTEX_B_3156	exon	Contig_84 143479..143858 -
exon_12103_4	exon_12103_4	Tribonema minus UTEX_B_3156	exon	Contig_84 145216..145371 -
exon_12103_3	exon_12103_3	Tribonema minus UTEX_B_3156	exon	Contig_84 146075..146201 -
exon_12103_2	exon_12103_2	Tribonema minus UTEX_B_3156	exon	Contig_84 147302..147415 -
exon_12103_1	exon_12103_1	Tribonema minus UTEX_B_3156	exon	Contig_84 149126..149424 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12103	UTR3_12103	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_84 143479..143739 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12103	CDS_12103	Tribonema minus UTEX_B_3156	CDS	Contig_84 149126..149371 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_12103	UTR5_12103	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_84 149372..149424 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_84:143479..149424-
coding sequence from alignment at Contig_84:143479..149424-

spliced messenger RNA

>mRNA_12103 ID=mRNA_12103|Name=jgi.p|Trimin1|94611|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1076bp|location=Sequence derived from alignment at Contig_84:143479..149424- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGACGCTTACGGCCAGCTCTTACCAGCAAGGCAGAGACGGAACGGCCGA
ATCATGCTGCTCCTGAAGTATGTGCTGCCGCTGGTGGTGCTGGCGACCGT
GGGAGCTTTCACCCTGGGCCCTTCGCTGCGAGGACTAGCCAATAGCTCAG
CGGTACGGATGGCAGCGGAGAGCGGCTCTGCTGGCATGGACAGGCGGCAG
TTCGTGCACGATGCTGCAGTTGGTGCTGCCGCAGGGGTGGGCGTCGCCGC
GGCACCGAAGGGGGCCTTTGCTGAAGGCGATCCCAAAGTGCAATTCCAGG
TGGAACTGGCGCCGGGCAAGCAGGGGACGTTTGTGATGCAGGTTCACCCG
GACTGGGCGCCCAAGGGGGCGGCGCGGTTCCTGGAGCTCGTGGACAGCGA
CTTTTTCACAGATGTCCGCTTCTTCCGCGTCCTCAAGGGCTTCGTGGCGC
AATTTGGCATCAGCGGCGACCCGCAGGTCTCCGCCAAGTGGCGCGCGTCG
GCGATCCGTGACGACCCCGTGACGCAGAGCAACAAGCGCGGCACCGTGGT
GTTCGCCACCGCCGGCGCCAACACCCGCACCAGCCAGCTCTTCATCAATT
TTGGCGACAACGCATTCCTGGACAAGATGGGCTTCAGCCCCATAGGGGAA
ATCGTTGAGGGCATGGACACTGTGGACTCGCTCTACGCTGACTACGGGGA
AGGTGCACCGAGGGGCAAGGGACCCGACCAAAACGCCATTCAGTCGCGTG
GCAATGCCTACCTGAAAGACAAGTTCCCCAACCTCAGCTACATCACAAAC
GCAAAGAGGATTTAGACGATTACATGATTACATTGGAGTAATTTGTTTCC
TGTCAGTATGCGATATATGCAAGAGGGGGCCGATCGACATAAGAAGGACA
CACAGCCTGCAAGGCAGAAATGGCAACAAGGCTTGCCTGCCCCTGCACTA
AGAAGGCACGCTGGTCCGCATCATGCACGCAAACACACAGCAATAGTTGA
GCACTGCCTATGCACGTGCCTTCCAGGGCAGCTACGTAATGCATTTCGCT
CGCCGGTGCTGCAGCACTGTCTGATA

protein sequence of jgi.p|Trimin1|94611

>Trimin1|94611|CE94610_202 ID=Trimin1|94611|CE94610_202|Name=jgi.p|Trimin1|94611|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp
MLLLKYVLPLVVLATVGAFTLGPSLRGLANSSAVRMAAESGSAGMDRRQF
VHDAAVGAAAGVGVAAAPKGAFAEGDPKVQFQVELAPGKQGTFVMQVHPD
WAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASA
IRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEI
VEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNA
KRI*

mRNA from alignment at Contig_84:143479..149424-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12103 ID=mRNA_12103|Name=jgi.p|Trimin1|94611|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5946bp|location=Sequence derived from alignment at Contig_84:143479..149424- (Tribonema minus UTEX_B_3156 )
ACGACGCTTACGGCCAGCTCTTACCAGCAAGGCAGAGACGGAACGGCCGA
ATCATGCTGCTCCTGAAGTATGTGCTGCCGCTGGTGGTGCTGGCGACCGT
GGGAGCTTTCACCCTGGGCCCTTCGCTGCGAGGACTAGCCAATAGCTCAG
CGGTACGGATGGCAGCGGAGAGCGGCTCTGCTGGCATGGACAGGCGGCAG
TTCGTGCACGATGCTGCAGTTGGTGCTGCCGCAGGGGTGGGCGTCGCCGC
GGCACCGAAGGGGGCCTTTGCTGAAGGCGATCCCAAAGTGCAATTCCAGG
TAAATCCAAACACCAAAGCGAATATGGCGATGCATGCGGCCACCTTCGTT
CTCATGGAAGTGTAGACATATCGCAGGCATTGTGCTGCTTTGCGCATCAG
CAGCATTGGAACTTCGGGAGGCCTGATGCAAAGTTTAGACATCTAATTAT
AAGCATGTCAGAATGTCGTGTGTCATGCGTCGGCGCAGTGAGATTCACTG
CAATCACCAGGGCAAGGAGACTAAGATTGCAGAAGCAGCACCTATCAAAT
ACATCTTACTTGTATGTTAGTCTTGAGTCATGGACACCTGGTCAGCAACA
CCGACTAAACGCATTTACGGCAGTGGATTGTGATGGGACAAGCGTGGGAT
CAAGTCTGACCACACTGGATTGCAAAATGAGACCCAATACTAGAGCTTAC
ACAAAATGTTTTCTGCAATAGCTGCGTCTCAGTTTTTGTGCTCGAAACTA
CCACCAGGTTCACACGTACCAAAAAACTTGACTTGCACGACTTTGCAGCG
ACAACGACATCAAGTGCAGATGATTCTTGGTGATCACTTGAAAATTGGGC
CGTCAACTTCACGGGCCGTGAAGCAAAAAATGTTCCTTTTTCAATAACGA
TATCCAATAAGTTTTGCCACTTCTACATATGCAGCAGGCTCCGGTGATGC
TGATGAGCCCGGAGGGCTGCAAAATTACACCGATGAATGTATAATGAATG
AGGTCTCATCCATCAGTGAATCGCGTGCGTCGCATGACATGCTGCGCCAC
ACCCAATCATCGACTTGCTCGGGGAGCACCTAAGCATGCTGTTGAAGGCG
TGAATTTCCTGTATCGTCTCCATTCCTATGGAAGTGGCCTTCAAATTCTC
ATGCACCCAAATATGCAGATATACTTCTAGTACGCTTTCATCGCATTCTG
ACTGTCACTTTTGCTACTGTCGCCAGCCCTGGATGAAGTGTTTGTGATGA
CACTAGAGTCTTGTCATATAACCCCGTTGCGTGCTTCAAGTGAGTTTTAT
GCTCTGTGATGTAGGGCGTCACTAGACTACCTACACACCCTGCCAGCACG
AGATTAGTTGATGATAGAAGCATGCAATACTTTGTCAGCACGCTGCCAAC
GACGTACAGTCCACCATACAGATATACTCAGGATGATAAGACTATAGTAG
ATTATATGCCATCATTTGTCATTGGTTTGTCTTCTTGCATGTGAGTCTAG
GTGCCGGTGGGCACCAATAGAACATGGCGCACAGGCTCCATAGGTAATAC
CCATACATAGACTTAAGGATAGGGTTAAAGATTGGTTTAGGTTAGGGGTA
AGGTTAGGCTATCTTATCTTTTTAACCTTACTCTAACTCTAACCCTAAGA
CATATTTTTCAAGAAGTACCTACCCATAAACTGCAGGCGTGCATCACTGC
TTCTAAGCAGCGCCGCCTGTGCGCTTGGCAAGAATTGTGCGCTTGCCCAG
AGCCTCAATTCGGATGGCCCCTTTGGTCGCCTCCCCCCCTGCACACCAGC
TCTCAATCATGCAACAACGTATGTGTTGAGTACCTTCAAATGGCAGTTCT
CCTCCTGCACAGCGGCCCGCCACCAACTCTCAATCATTCAACAGCCCCGT
CAAGTGCCTTCTTTCAAAGCAATGCTCGTTTGTCACGCCTCTGTCAATCA
AACGCGCCTCACTTCTGAACCTCAGTTTTTGACACCTTTTGTCAAATTCT
GTGTCGCAGGTGGAACTGGCGCCGGGCAAGCAGGGGACGTTTGTGATGCA
GGTTCACCCGGACTGGGCGCCCAAGGGGGCGGCGCGGTTCCTGGAGCTCG
TGGACAGCGACTTTTTCACAGATGTGAGAAGAATTTTTCAGCATTTTCTT
GAACATGCTTTTCGACAGCGACTTTTTCACAGATGCGAGGAGAAAGCTCA
AGCGTATAATTGAAAGTGATTCGCGTCACTCAGCATTTTGTTCACAGCTG
ACTAGAGAATTCTGGCTTCCTTCTGTTACTCGTAAGAGTTTGGATTGGGC
GCCCAAGGGGGCAACGCGGGTCCTGGAACTCGTCGACAGCGATTTCTTCA
CTGATGTGAGGAAAATTGTCCAGCATTTTCTTGAACATGCTGAGCAGCAT
TGCTCTGGCCGCCTGCGCCTGGAATCTGTCTTGTCAGCAATGCCTCAGGC
GACGTCTCTGTGCGGGTTGCGTTATTGGGCGGCATGCAGCGCTACGCACT
TCAAGTCCCCTAAAATCATGCAGACGCACTCGCAGGAAAGCAGGCGCATG
GAGCGACTTGCTGTGTACCTGAAGAGTCAATCGAAGTCCGTGGGGGGGGG
GGGGGTGACCAGTGTGGCCACTCCCCCTGTACTGAAACTTAAGGGCGCCG
TAGCCGTGCGTTTGCAGCATTCGCCAGCTGTCTCCAGTCGCATTTGCACG
GTCAGCCCGAGGCCGGACTCATTGTTAGGCTTAGGCTAGGGTTGGGTTTA
GGGTCAAGCTTTTGAAAGTCTCCTCGAGTCCTATCCCTCGAGACTCTTCC
TGGGCATTCCAAGCTTTACATCTCAGCTTGCTTACATAAATGCAAATTCA
ACCAGGCTCCTTGCCGACGATTTGTTGTCACATACTTGTATACCCTGAGA
GGCAAGCTGCGTTCGAAGCAGCGCACCTGGGGCTGACTGCTCCTCAGTGC
AGCTGTCTGCAGCCGCCCCTGCCGCTCTCGCCTGAATGACGCATGGCAAC
TCGGCGCCTCCGAATGGCCCACAACACTCATAGAAGCGAATCAAACGATC
GTAGACGTCTAAGTGACAAGGAGTGGTTAGCCTCAAGTGCCTTCCACCAA
TACGACCGTGGTCGTCGCTGCTGCAGTCATTGGCCACAAGCCAACCAGTG
CCATCACATCCACATCATGTGCTCAGCACTGCTACCGCTGCTGCTCTCGC
GCCCCCGCCCCTCCCCCGTTCAGGTCCGCTTCTTCCGCGTCCTCAAGGGC
TTCGTGGCGCAATTTGGCATCAGCGGCGACCCGCAGGTCTCCGCCAAGTG
GCGCGCGTCGGCGATCCGTGACGACCCCGTGACGCAGAGCAACAAGCGCG
GTGAGCGCTGCTGCTGTTGAGCGATGCTGCTGCTGCAACGCTTGTGCAAG
TAAGCCTGCGCCCTGCTAAGCGGCCGGCGGCGCGAGGTTGTGGCAGCAGC
GGCAGCCCGGCCGCAGGCAGAGCCGCCGCCGTCATGCGCCGCTGCTGCCG
CCGCCGCTTCTGCTGCTTCCGTTGTGCTTGCCGGGTTCCCTCACGAGTGC
TCGACGACCGCGTGACGCAGAGCAACGAGCGCGGTGAGCGCTGCTGCTGT
TGAGCGCTGCTGCCGTGCGTCCGACATGCACGCGCCTCAGCGCGCTCCGG
CAGTGGCGCCGAAGGACAGCGCAGTACGCGTCAGCGGTGTGCCGCGATTC
GTCGGGCGTCCGCACCGCATTGCACAGTTTGGGGAGGGTCAAATCTGGCA
CTAATGCTGTAGACGGTGAAAACTAGCACGGGCTACGCTACCTAGCCAGT
ATGTACAACCGTACCGCCATAGGTAAGGCACCAGCATGCGTGCACACACG
AGAAGTGCGAAAAGCGGCGTCGTGGCTAACCTGGCGGACCGAACTGAGCA
CCTGCATTGAGAACTTTTGCTACGGTGAGGTGTGCACAGGTGCATGAGCA
TAAATGCTGTCGCGTTGTGCGCAAAGCTCGCAACGAAACCTTCTACGAAA
CTTTGGCGAACAAGCTTTGAGCACCAGCCGCTTGTTATTTGCTCCTTGTG
CAGGCACCGTGGTGTTCGCCACCGCCGGCGCCAACACCCGCACCAGCCAG
CTCTTCATCAATTTTGGCGACAACGCATTCCTGGACAAGATGGGCTTCAG
CCCCATAGGGGAAATCGTTGAGGGCATGGACACTGTGGACTCGCTCTACG
CTGACTACGGTATGCATCGCTGTTTTTTTGCGGGGACGGCATAGTGCAAG
TTCTGCAGCCTCCAGCCATTGCGCACTGAGGCTGCTGTTGATTCACATTT
GATGACAAATATGACTATTCACCCTACGTGTTGGCTTTGGCACACTGCAA
GAGGTATTTGGTGTTCCACTTTGGGTACGGCCATATCATGGTGACAGCAC
CAGCTCTCGTCCGATCGCTGAAGTTAAGCACCCTTGAGCGGAGCTAGTAC
TACGGTGGGGGACCACGTGGGAAGCCTCCGTGCTGTACTCTTTTTTCCCA
CCACACCTAGGCCACATCTCCACCATATCGTCGCCGACAGACAGTGCGTT
GGTGCTGTCATGCTCGCAATTGAAGTTAAAGCAAGAGCACGCAGAGGCTT
GATTACCACCCAAACACACCACGATTATCACTAGCACAGCTGAGTTCAAG
CTGCTTGCGCGGCATCATCAGAGCACGCAATGAACACCCACGAATCGTTT
GGACAAATGACATGTTGATGCTGCTGTGGGCACCAGTGCTGGCATCTACT
GTGCACATGGTTTGAGACGGGCATGCGCACCAGTATACTGCTTGTGCTTT
AGTCATATGACAGTCTTCCTATGCAGGGGATGAGCTCTGTCTTACATTGT
TTCGAGTCACGTGCACAGCGTGGATGATGCTGTATTAATTGCGCGCTGTG
CAATGGCCACATTTTACTCCCCTCTATGCAGAGTAACAAGGCTCTATCTA
ATTCATGCAGCCAAGATGCTCCATTTACATCCTGCCACGCGATGGCGCAC
AAAAGTCCTTCCACTTTGGTGTATGCAAGTCAGCATGTGCCTCTGCCACA
ATCCGCACTGTACCGTACTGCAGTCATCTTGGCTGCTTGAACTTATAGCA
TGTGATCCTTACAGTGGAAGCAGTGACTAGGGGGATGAGCAACCCCTTTT
GAAAAATCTCCAGTGGTCCCCCTTCCCTGACTGTGCTCAATAGCTCAGAT
TGTCGGGCTTGACCAGGCCTTTCAAATGCACCTATCGTCTCTAAAATTTG
AACTTCACGAGTTGCAGGCAGAGAGACTCAGTTAGTGCATGCATTAGCTA
GGGTTTGAGGTAGGGCTTGGCCTATTGCGTTAACATCGAACAATAGAGAC
ATGTGGACCTGCTCAATCAACGCGTGACAAGTGGGGCTTTCCAGCGGTGC
AATCAGATTTTCGTGGGGATTCTGGTCCGCATGTTATTATGAGTCACCTC
CCTCACCATCAGAAGTTATCCTACATCAACCCCCATCCCCCTAGTCACTG
CTTCCACTGTAATGATCATTGATACTCAAAATATGCTTTGGCGCTGACTG
TGTGCTTGCTGAACAGGGGAAGGTGCACCGAGGGGCAAGGGACCCGACCA
AAACGCCATTCAGTCGCGTGGCAATGCCTACCTGAAAGACAAGTTCCCCA
ACCTCAGCTACATCACAAACGCAAAGAGGATTTAGACGATTACATGATTA
CATTGGAGTAATTTGTTTCCTGTCAGTATGCGATATATGCAAGAGGGGGC
CGATCGACATAAGAAGGACACACAGCCTGCAAGGCAGAAATGGCAACAAG
GCTTGCCTGCCCCTGCACTAAGAAGGCACGCTGGTCCGCATCATGCACGC
AAACACACAGCAATAGTTGAGCACTGCCTATGCACGTGCCTTCCAGGGCA
GCTACGTAATGCATTTCGCTCGCCGGTGCTGCAGCACTGTCTGATA

Coding sequence (CDS) from alignment at Contig_84:143479..149424-

>mRNA_12103 ID=mRNA_12103|Name=jgi.p|Trimin1|94611|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=762bp|location=Sequence derived from alignment at Contig_84:143479..149424- (Tribonema minus UTEX_B_3156 )
ATGCTGCTCCTGAAGTATGTGCTGCCGCTGGTGGTGCTGGCGACCGTGGG
AGCTTTCACCCTGGGCCCTTCGCTGCGAGGACTAGCCAATAGCTCAGCGG
TACGGATGGCAGCGGAGAGCGGCTCTGCTGGCATGGACAGGCGGCAGTTC
GTGCACGATGCTGCAGTTGGTGCTGCCGCAGGGGTGGGCGTCGCCGCGGC
ACCGAAGGGGGCCTTTGCTGAAGGCGATCCCAAAGTGCAATTCCAGGTGG
AACTGGCGCCGGGCAAGCAGGGGACGTTTGTGATGCAGGTTCACCCGGAC
TGGGCGCCCAAGGGGGCGGCGCGGTTCCTGGAGCTCGTGGACAGCGACTT
TTTCACAGATGTCCGCTTCTTCCGCGTCCTCAAGGGCTTCGTGGCGCAAT
TTGGCATCAGCGGCGACCCGCAGGTCTCCGCCAAGTGGCGCGCGTCGGCG
ATCCGTGACGACCCCGTGACGCAGAGCAACAAGCGCGGCACCGTGGTGTT
CGCCACCGCCGGCGCCAACACCCGCACCAGCCAGCTCTTCATCAATTTTG
GCGACAACGCATTCCTGGACAAGATGGGCTTCAGCCCCATAGGGGAAATC
GTTGAGGGCATGGACACTGTGGACTCGCTCTACGCTGACTACGGGGAAGG
TGCACCGAGGGGCAAGGGACCCGACCAAAACGCCATTCAGTCGCGTGGCA
ATGCCTACCTGAAAGACAAGTTCCCCAACCTCAGCTACATCACAAACGCA
AAGAGGATTTAG