mRNA_12095 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A836C982_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C982_9STRA) HSP 1 Score: 544 bits (1401), Expect = 2.990e-195 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 3 Query: 18 MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQTL 851 MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQTL Sbjct: 1 MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQTL 278
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A833VAE8_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VAE8_9POAL) HSP 1 Score: 224 bits (570), Expect = 3.780e-68 Identity = 141/280 (50.36%), Postives = 183/280 (65.36%), Query Frame = 3 Query: 6 TVATMSDTGSAGSNDIASLEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREAD-IAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 TVA++S++G +GS L+G LF+Y P VAF+ G + +V LGGLTDG L+ +Y L+ AL+ +WSLV P LS+SY+GYG SL QD E+ L+S L +EG +VL+GHSTGCQ VH+MK + A K V GV+LQA VSDR+Y ATLP+T L+ LA + LMPREAD APITAYRY SL A GDDDMFS D S+++L+ RLGHM + P ++ S+ADEYVP VD ALV+R+ A+ G K V + G H LS + Sbjct: 41 TVASLSESGGSGSRK-KQLKGALFKYGSNPAQVAFKTGDFSQQVVFLGGLTDGLLATEYIEPLSIALENNNWSLVQPLLSSSYIGYGTSSLEQDALEIDQLISYLINNENSEG-VVLLGHSTGCQDIVHYMKTS-LACSKAVRGVILQAPVSDREYRATLPETPVLIDLAAKMISDGKGNELMPREADSCAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMASTPCQVIFSMADEYVPEYVDKKALVDRLCRALGGAEK-VAIEWGNHSLSNRV 316
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A2P6QXB5_ROSCH (Putative alpha/Beta hydrolase n=3 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QXB5_ROSCH) HSP 1 Score: 212 bits (540), Expect = 1.310e-63 Identity = 133/293 (45.39%), Postives = 178/293 (60.75%), Query Frame = 3 Query: 21 SDTGSAGSNDIAS-------LEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPL----TALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQ 845 SD+GS GS D + G LF+Y +P VAF+ G + ++ +GGLTDG L+ +Y LA ALD + WSLV +S+SY GYG SL QD EL L+S +EG +VL+GHSTGCQ VH+++ A + V +LQA VSDR+Y ATLP+T ++ LA T+ + LMP EAD+APITAYRY SL A GDDDMFS D + ++L+ +LGHMT P ++ S+ADEYVP VD ALV+R+ AM G K V + G H LS + + F++ Sbjct: 42 SDSGSGGSGDFSGPVVRKNQFRGALFKYGPKPIQVAFKTGDYRQQVIFIGGLTDGFLATEYLEPLAIALDKEKWSLVQLLMSSSYNGYGTSSLKQDAMELDQLISYFINKEDSEG-VVLIGHSTGCQDIVHYIR-TNAACSRAVRAAILQAPVSDREYRATLPETAAMIDLASTMINEGRGSQLMPSEADLAPITAYRYHSLCAYNGDDDMFSSDLTDDQLRLKLGHMTNTPCQVIYSMADEYVPDYVDKKALVQRLCKAMGGAEK-VEIEHGNHSLSNRVHEAVDAMIDFVK 331
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A6P5HEC2_ANACO (UPF0613 protein PB24D3.06c n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5HEC2_ANACO) HSP 1 Score: 212 bits (540), Expect = 1.950e-63 Identity = 135/278 (48.56%), Postives = 176/278 (63.31%), Query Frame = 3 Query: 12 ATMSDTGSAGSNDIASLEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 A+ D +GS L G LF+Y +P VAF+ G N ++ +GGLTDG L+ +Y L+ AL+ + WSLV P LS+SY+GYG SL QD EL L+ L +EG +VL+GHSTGCQ VH+M+ +R V GV+LQA VSDR+Y ATLP+T ++ L+ + LMPREAD APITAYRY SL+A GDDDMFS D S+++L+ RLGHM+ P ++ S+ADEYVP VD ALVER+ AM G K V + G H LS + Sbjct: 60 ASFVDMSGSGSRK-KQLRGTLFKYGPKPIQVAFKTGDFNQQVIFIGGLTDGFLATEYLEPLSLALENEKWSLVQPLLSSSYIGYGTSSLEQDAVELDQLIGYLINKENSEG-VVLLGHSTGCQDIVHYMRTNFSCSRA-VRGVILQAPVSDREYRATLPETAAMIDLSAKMISEGRAMDLMPREADPGAPITAYRYHSLSAYMGDDDMFSSDLSEDQLRQRLGHMSSTPCQVIFSMADEYVPEYVDKKALVERLCQAMGGAEK-VEIEWGNHSLSNRV 333
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A5P1FII7_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FII7_ASPOF) HSP 1 Score: 211 bits (538), Expect = 1.980e-63 Identity = 135/279 (48.39%), Postives = 179/279 (64.16%), Query Frame = 3 Query: 12 ATMSDTGSAGSNDIAS-LEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTL----PLTALMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 A+ S +A +N IA L G L +Y +P VAF+ G N ++ +GGLTDG L+ +Y L++AL+ + WSLV P L++SY+GYG SL QD EL L+ L +EG +VL+GHSTGCQ VH+M+ A + V G +LQA VSDR+Y ATLP+T E++ LA + LMPR+A+ APITAYRY SL+A GDDDMFS D S+++LK RLGHM+ P ++ S+ADEYVP VD ALVER+ AM G K V + G H LS + Sbjct: 34 ASASSLRTAQANPIAGELRGVLLKYGPKPAQVAFRTGDFNQQVIFIGGLTDGLLATEYLEPLSSALENEKWSLVQPLLTSSYIGYGTSSLEQDALELDQLIGYLINKENSEG-VVLLGHSTGCQDIVHYMR-TNLAFSRAVRGAILQAPVSDREYRATLPETAEMIDLALNMINEGRAMDLMPRQANPDAPITAYRYHSLSAYMGDDDMFSSDLSEDQLKARLGHMSNTPCQVIFSMADEYVPDYVDKKALVERLCRAMGGAEK-VEIEWGNHSLSNRV 309
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A6G1F8K6_9ORYZ (Uncharacterized protein n=3 Tax=Oryzeae TaxID=147380 RepID=A0A6G1F8K6_9ORYZ) HSP 1 Score: 212 bits (539), Expect = 2.820e-63 Identity = 132/262 (50.38%), Postives = 170/262 (64.89%), Query Frame = 3 Query: 60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 L+G LF+Y P VAF+ G N ++ +GGLTDG L+ Y L+ AL+V+ WSLV P LS+SY GYG+ SL QD EL L+S L +EG ++L+GHSTGCQ VH+M+ A K V+GV+LQA VSDR+Y ATLP+T E++ LA + LMPREA+ APITAYRY SL A GDDDMFS D S+++L+ RLGHM T ++ S+ DEYVP VD ALV+RI A+ G K V + G H LS + Sbjct: 76 LQGTLFKYGPKSAQVAFRTGDFNHQVIFIGGLTDGFLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSEG-VILLGHSTGCQDIVHYMR-TNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSECRGMDLMPREANPDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRICRALGGAEK-VEIEWGNHALSNRM 334
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A1B6Q9U3_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6Q9U3_SORBI) HSP 1 Score: 210 bits (535), Expect = 7.190e-63 Identity = 130/262 (49.62%), Postives = 169/262 (64.50%), Query Frame = 3 Query: 60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 L G LF+Y P VAF+ G N ++ +GGLTDG L+ Y L+ AL+V+ WSLV P LS+SY GYG+ SL QD EL L+S L +EG ++L+GHSTGCQ VH+M+ A K V+GV+LQA VSDR+Y ATLP+T E++ LA + LMPREA+ APITAYRY SL + GDDDMFS D S+++L+ RLGHM T ++ S+ DEYVP VD ALV+R+ A+ G K V + G H LS + Sbjct: 60 LRGALFKYGPKSAQVAFRTGDFNHQVIFIGGLTDGLLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSEG-VILLGHSTGCQDIVHYMR-TNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMISEGRGMELMPREANPDAPITAYRYHSLCSYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRLCRALGGAEK-VEIEWGNHALSNRV 318
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A0K9NLL9_ZOSMR (Esterase/lipase superfamily protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLL9_ZOSMR) HSP 1 Score: 210 bits (534), Expect = 8.330e-63 Identity = 127/289 (43.94%), Postives = 174/289 (60.21%), Query Frame = 3 Query: 9 VATMSDTGSAGSNDIASLEGRLFRYRPGLV--AFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDC---DELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTL----PLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQ 845 VA D +N L+G +F+Y P V AF+ G L+ +GGLTDG + +Y L+ AL+ + WSLV P LS+SY GYG SL QD D+L+D L +VL+G STGCQ V++M+ + A K V +LQA VSDR++ ATLP T ++ LA ++ T LMP+EA+ APITAYRY SL+A GDDDMFS DF+ ++L+ +LGHMT P ++ S+ADE VP VD ALVER+ A+ G K V + G H LS ++ E +F++ Sbjct: 37 VAVGGDATGCSTNKKNHLKGSMFKYGPNSVQVAFKTGDFKQQLIFIGGLTDGLFATQYVEPLSVALEKEKWSLVQPLLSSSYTGYGTSSLKQDSLELDQLIDYLINKENSEGVVLLGTSTGCQDIVYYMR-SNSACSKAVRAAILQAPVSDREHRATLPNTSAMIDLAASMISEGKATELMPKEAECAPITAYRYYSLSAYNGDDDMFSSDFTDDQLRLKLGHMTHTPCQVIFSMADECVPNYVDKKALVERLCKALGGAEK-VEIEWGNHSLSNRVEEAVEAIISFVR 323
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A0E0LIH2_ORYPU (Uncharacterized protein n=11 Tax=Oryza TaxID=4527 RepID=A0A0E0LIH2_ORYPU) HSP 1 Score: 210 bits (535), Expect = 9.500e-63 Identity = 129/262 (49.24%), Postives = 171/262 (65.27%), Query Frame = 3 Query: 60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 ++G LF+Y P VAF+ G N ++ +GGLTDG L+ Y L+ AL+V+ WSLV P LS+SY GYG+ SL QD EL L+S L ++G ++L+GHSTGCQ VH+M+ A K V+GV+LQA VSDR+Y ATLP+T E++ LA + LMPREA+ APITAYRY SL A GDDDMFS D S+++L+ RLGHM T ++ S+ DEYVP VD ALV+R+ A+ G K V++ G H LS + Sbjct: 70 VQGTLFKYGPKSAQVAFKTGDFNHQVIFIGGLTDGFLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSDG-VILLGHSTGCQDIVHYMR-TNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSEGRGMDLMPREANPDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRLCRALGGAEK-VKIEWGNHALSNRV 328
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: I1H2M8_BRADI (Uncharacterized protein n=3 Tax=Pooideae TaxID=147368 RepID=I1H2M8_BRADI) HSP 1 Score: 209 bits (532), Expect = 2.600e-62 Identity = 129/262 (49.24%), Postives = 168/262 (64.12%), Query Frame = 3 Query: 60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809 L G LF+Y P VAF+ G N ++ +GGLTDG L+ Y L+ AL+V+ WSLV P LS+SY+GYG+ SL QD EL L+ L +EG ++L+GHSTGCQ VH+M+ A K V+GV+LQA VSDR+Y ATLP+T E++ LA + LMPREA+ APITAYR+ SL A GDDDMFS D S+++L+ RLGHM T ++ S+ DEYVP VD ALV R+ A+ G K V + G H LS + Sbjct: 69 LHGTLFKYGPKSANVAFRTGDFNHQVIFIGGLTDGLLATDYLEPLSLALEVEKWSLVQPLLSSSYIGYGISSLEQDALELDQLIGYLINKENSEG-VILLGHSTGCQDIVHYMR-TNLACSKAVSGVILQAPVSDREYRATLPETAEMIDLASKMISEGRGMDLMPREANSDAPITAYRFHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQIIFSMGDEYVPEYVDKKALVNRLCQALGGAEK-VEIEWGDHALSNRV 327 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12095 ID=mRNA_12095|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=854bp|location=Sequence derived from alignment at Contig_84:85598..86451+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCTCACCGTGGCCACCATGTCCGACACTGGATCGGCCGGCAGTAATGACback to top protein sequence of jgi.p|Trimin1|336541 >Trimin1|336541|MIX45304_12_80 ID=Trimin1|336541|MIX45304_12_80|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=279bp MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSback to top mRNA from alignment at Contig_84:85598..86451+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12095 ID=mRNA_12095|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=854bp|location=Sequence derived from alignment at Contig_84:85598..86451+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_84:85598..86451+ >mRNA_12095 ID=mRNA_12095|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=837bp|location=Sequence derived from alignment at Contig_84:85598..86451+ (Tribonema minus UTEX_B_3156 )back to top |