mRNA_12087 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351228
Unique NamemRNA_12087
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351228 vs. uniprot
Match: A0A835YT28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT28_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.440e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:  205 MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTEGNSDT 369
            MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTEGNSDT
Sbjct:    1 MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTEGNSDT 55
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BLAST of jgi.p|Trimin1|351228 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.000e-26
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 MSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP 159
            MSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP
Sbjct:   21 MSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP 73
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351228 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YT28_9STRA2.440e-31100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIM3_9STRA2.000e-26100.00Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:24585..25608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351228|estExt_Genemark1.C_Ctg_840008
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId351550
TrackFilteredModels1
ProteinId351228
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351228gene_12087Tribonema minus UTEX_B_3156 geneContig_84 24585..25608 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12087_1exon_12087_1Tribonema minus UTEX_B_3156 exonContig_84 24585..24684 +
exon_12087_2exon_12087_2Tribonema minus UTEX_B_3156 exonContig_84 25275..25608 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12087UTR5_12087Tribonema minus UTEX_B_3156 five_prime_UTRContig_84 24585..24684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12087CDS_12087Tribonema minus UTEX_B_3156 CDSContig_84 25379..25546 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12087UTR3_12087Tribonema minus UTEX_B_3156 three_prime_UTRContig_84 25547..25608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351228Trimin1|351228|estExt_Genemark1.C_Ctg_840008Tribonema minus UTEX_B_3156 polypeptideContig_84 25379..25546 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12087 ID=mRNA_12087|Name=jgi.p|Trimin1|351228|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=434bp|location=Sequence derived from alignment at Contig_84:24585..25608+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAGGCGACGGCGCTGCGCGATCTGGCGGATTCAATGGTGGAGCA
AACGGGCGCTGTGGATGAGAAGCAGCTGCGGCCACTGATTGACGAAATAG
GCGAGCTCAAGACGCAGTACAGGGCTGTACTGGGGGGAGTCGTGAGGAGC
AACGCACCCTGAGCATACCAAGCATCAGCACCTTATTAAGCCAAGTTTAC
ACTGATGGTGGCTGTGCCGCCACTGCGGTGCATATACTCATGTGCACACA
GCAGCGGCGGCACTGCCTCTTTTAGCTCACAGAATATTCTGGGTACTGTC
GCCCGAGCACACTCCCGGTGCGCGGGCTCTTGCAGAGTGTCATGCCAAAC
AGAGGGCAATAGTGACACTTAGCAATGGCATGAACATGTTCTGGCATAAC
TTACACAGATAGTTAGTGCCTTTGTACAGGTGCA
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protein sequence of jgi.p|Trimin1|351228

>Trimin1|351228|estExt_Genemark1.C_Ctg_840008 ID=Trimin1|351228|estExt_Genemark1.C_Ctg_840008|Name=jgi.p|Trimin1|351228|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp
MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTE
GNSDT*
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mRNA from alignment at Contig_84:24585..25608+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12087 ID=mRNA_12087|Name=jgi.p|Trimin1|351228|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1024bp|location=Sequence derived from alignment at Contig_84:24585..25608+ (Tribonema minus UTEX_B_3156 )
ATGTCAAAGGCGACGGCGCTGCGCGATCTGGCGGATTCAATGGTGGAGCA
AACGGGCGCTGTGGATGAGAAGCAGCTGCGGCCACTGATTGACGAAATAG
GTACGCAGGCAGGTTTGTGATACTTAAACATTAAGTTAAAGCCCAGATGG
GTTTGATTAGTCTCATGTCAACAACAGCGCCTTCGCATTACACGCGCCCT
CTGAAGGTTCTGTGCAGAGCATTTCGTAAAGGAAAGCAACTACCTCTATG
TTTGTCGCAAAAGCTCTCTGGGCGCATGCTGTCTCGGCTTCTCAGGAGCT
CAAGCATGCATTGCAACCTGAGGCCATTGCTCGCGTTGTTTGCAATGAAC
GCCCGCAAGCTGATTGCGTAAGTGGTGTGATTTGTGACAAGCACCCATGA
GCTCATGAAGTCCAGCATGATAGTTTTGCATGCATGACAACTGGTTCCAG
CAACTGAGTGACACTGTTGGCACAGTGCATCCATCACAGCTACTCTGTAC
AAAAGTAGCGAAAAGCTTTGTTTACGGCAAGATGTTCCAGCCCATTGGCC
TGACAATGTTGGCACAGTGTATGTACTCAACGCTATCGGTAAGCATCGCA
TTAACGGAACTTTCAAAATGTACAAGTGTGTGCATGGTGAAGACAAGCAA
CTGACTGAGCCACTGTTCGCTCTTTTGCAATCGCATGCAGGCGAGCTCAA
GACGCAGTACAGGGCTGTACTGGGGGGAGTCGTGAGGAGCAACGCACCCT
GAGCATACCAAGCATCAGCACCTTATTAAGCCAAGTTTACACTGATGGTG
GCTGTGCCGCCACTGCGGTGCATATACTCATGTGCACACAGCAGCGGCGG
CACTGCCTCTTTTAGCTCACAGAATATTCTGGGTACTGTCGCCCGAGCAC
ACTCCCGGTGCGCGGGCTCTTGCAGAGTGTCATGCCAAACAGAGGGCAAT
AGTGACACTTAGCAATGGCATGAACATGTTCTGGCATAACTTACACAGAT
AGTTAGTGCCTTTGTACAGGTGCA
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Coding sequence (CDS) from alignment at Contig_84:24585..25608+

>mRNA_12087 ID=mRNA_12087|Name=jgi.p|Trimin1|351228|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_84:24585..25608+ (Tribonema minus UTEX_B_3156 )
ATGGTGGCTGTGCCGCCACTGCGGTGCATATACTCATGTGCACACAGCAG
CGGCGGCACTGCCTCTTTTAGCTCACAGAATATTCTGGGTACTGTCGCCC
GAGCACACTCCCGGTGCGCGGGCTCTTGCAGAGTGTCATGCCAAACAGAG
GGCAATAGTGACACTTAG
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