mRNA_12079 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351222
Unique NamemRNA_12079
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A836C7M1_9STRA (TNase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M1_9STRA)

HSP 1 Score: 528 bits (1359), Expect = 1.870e-187
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1
Query:    1 MAWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGWAKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            MAWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGWAKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK
Sbjct:    1 MAWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGWAKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 323          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A835YK22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK22_9STRA)

HSP 1 Score: 457 bits (1177), Expect = 1.480e-150
Identity = 298/322 (92.55%), Postives = 298/322 (92.55%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGWAKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            AWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGWAKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGA   A         CAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASG            GVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK
Sbjct:  133 AWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGWAKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGALLQAH-------RCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASG------------GVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 435          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A6H5KXU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXU2_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.430e-54
Identity = 178/338 (52.66%), Postives = 217/338 (64.20%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMDNESLNAVVAREGWAKVNAREGDS-ATEAEELKRLGAAAEAARKGMYAGPGR-----GRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVD---------QPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTI 966
            AW+SREFLR+  IGKQV FKV+++ G   R FG V +D ESL   VA  GWA+V  +   S ++E EEL  LG  AEA + G++           R+VKW+ VD        V   A     P++  IEH+RDGSS RA +     MI+F LAG+ACPR+NAP   P  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX            QPEP+A EA+ F E RLL+REV++LL+               GVDK  +LYG V+H KG++  EL++ GLARMVDW+  ++ R  A+AMR AENE KRA+LRLWR W PP I
Sbjct:   54 AWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGASSKSSELEELVELGKNAEANKLGIFTDDSAKQEAGSREVKWTDVDG-------VAILAAHKGVPVKATIEHLRDGSSYRALLHDSWTMISFSLAGVACPRMNAPARRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXPXXXXXQPEPYAAEAKFFSEVRLLHREVNLLLQ---------------GVDKQGSLYGAVLHPKGDVRHELLKQGLARMVDWSLVYVSRSDALAMRQAENEGKRARLRLWREWAPPQI 369          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: W7TNM8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNM8_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.920e-52
Identity = 131/332 (39.46%), Postives = 177/332 (53.31%), Query Frame = 1
Query:    7 WESREFLRQLTIGKQVAFKVDYKGGM---RTFGTVTMDNESLNAVVAREGWAKVN----AREGDSATEAEELKRLGAAAEAARKGMYAGP-GRG---RDVKWS-GVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTI 966
            W +REFLR+  +G QV+FKVDY   M   R FGT+T++ ESLN  V +EGWA+V       E +++ E EEL RL A A A +KG++AG  G G     V+W  GVDT A           +   P R+ IE+VRDG + RA V+     +N  LAGI  PRVN P     A                                             T  +PEP+ALE+R+F ETRLL+R+VD++               V GVDKY  LYGT+ H KGNI+VEL+++GLAR+V+++  F  R+  +  R AE +AK AQLR+W+G+ PPT+
Sbjct:   58 WAAREFLRRHCVGFQVSFKVDYTVPMLNNREFGTITLNGESLNRTVVKEGWARVRLPRTGNESEASPELEELVRLEAEALAEKKGLHAGEAGEGATREGVQWGPGVDTEAIL-------QRIKGKPTRMTIEYVRDGGAFRALVLDSHTYVNLSLAGITAPRVNFPPKTASAAGDGGAGATTVAAG-------------------------------TASKPEPYALESRNFTETRLLHRDVDVV---------------VGGVDKYGTLYGTISHPKGNISVELLKAGLARIVEFSIDFTSRENILQYRLAERQAKAAQLRIWKGYVPPTV 336          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A5D6XGZ2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGZ2_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.210e-43
Identity = 132/337 (39.17%), Postives = 174/337 (51.63%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMD------NESLNAVVAREGWAKVNA----REGDSATEAEELKRLGAAAEAARKGMY--AGPGRGRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKG-NIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            AW SREFLR+L IGK V FKV+Y+     R FG+V +        E+L  +VAREG+AKV +    R+G  A   + LK    AAE  +KGMY  A       VKW+G DT A     + A       P   V+E VRDG+S+R  +     ++NFGLAG+ CPR+ AP VA  A                                             T   P P+A EA+HF E RLL+R+V++ LE               GVDKY NLYG+VVH+ G NI+VEL+++GLA+M DW+SAF       AMR+AE EAK A LR+W+G+  P ++
Sbjct:   55 AWASREFLRKLAIGKTVRFKVEYRVAAINRDFGSVWLPPNARGVEENLCVIVAREGFAKVKSLEQSRDGACADHEKMLKVEAVAAEQ-KKGMYKDADELSNVTVKWAGADTDA-----LLAEHKGKLVP--AVVEAVRDGASMRVILRPSMYILNFGLAGVQCPRM-APPVAAAAAGAAEPPS-------------------------------------TPAGPAPYAREAKHFTEMRLLHRDVELKLE---------------GVDKYGNLYGSVVHSSGKNISVELLKTGLAKMADWSSAFTGAAARTAMRAAEKEAKAAALRVWKGYQAPVLQ 330          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A024G1V6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1V6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 5.050e-42
Identity = 123/339 (36.28%), Postives = 170/339 (50.15%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMDN----ESLNAVVAREGWAKVN--AREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRD--------VKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKG-NIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            AW SRE LR+L IGK V FKV+Y   +  R FG+V + N    E LN ++   G+AKV     EG    + ++L++L A A A ++G+Y  P   ++        VKW  V+        + A       P   ++E+VR+G+ +R  ++    MINFGLAG+ CPR+NA    PPA                                             TV Q  PFA EA+HF E RLL+R V++ L+               GVDK+ N YG+VVH  G NI+VEL+R+G ARMVDW+S +    V   MRSAE EAK A+LR+WR + PP ++
Sbjct:   55 AWASRESLRKLCIGKTVRFKVEYHVNVINRDFGSVWLQNADGKEHLNTLMVHGGYAKVKQEGNEGSLTYDLDKLRQLEALAIAEKRGIYQDPNDTKEAEFGPYAAVKWM-VNISVEDAESILAENKDKLIP--ALVENVREGAFMRVLLIPSMQMINFGLAGVQCPRMNA--TTPPALNNEISDNASKDKGAEGT---------------------------TVIQAAPFAREAKHFTEMRLLHRNVEVKLQ---------------GVDKFGNFYGSVVHPSGRNISVELLRNGYARMVDWSSQYTSPAVRATMRSAEKEAKSAKLRVWRDYQPPALQ 346          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: K3X0E8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0E8_GLOUD)

HSP 1 Score: 164 bits (415), Expect = 1.230e-41
Identity = 120/337 (35.61%), Postives = 168/337 (49.85%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMD------NESLNAVVAREGWAKVN----AREGDSATEAEELKRLGAAAEAARKGMYAGPGR--GRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKG-NIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            AW SREFLR+  IGK V FKV+Y+ G   R FG+V +        E+L  +VAREG+AKV     +R+G  A   E++ ++   A + +KGMY          VKW+G D     G  + A       P   ++E VRDG+++R  +     ++NFGLAG+ CPR+  P  AP A                                                 P P++ EA+HF E RLL+R+V++ LE               GVDKY NLYG+VVH+ G NI+VEL++ GL +M DW+SAF       AMR+AE EAK A LR+W+ +  P ++
Sbjct:   55 AWASREFLRKTAIGKTVRFKVEYRVGAINRDFGSVWLPANARGVEENLCVIVAREGYAKVKTVEQSRDGACADH-EKMLKVEEVAISQKKGMYKDTDELSNATVKWTGAD-----GESLVAEYKGKLVP--AIVESVRDGAAMRVILRPTMQIVNFGLAGVQCPRIAPPAAAPGAPPVEATG------------------------------------------PAPYSREAKHFTEMRLLHRDVELKLE---------------GVDKYGNLYGSVVHSSGRNISVELLKQGLGKMADWSSAFTSSAARTAMRNAEKEAKAANLRVWKDYQAPVLQ 326          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: F0WDW0_9STRA (Nuclease putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WDW0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.270e-41
Identity = 120/348 (34.48%), Postives = 172/348 (49.43%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMDN----ESLNAVVAREGWAKVN--AREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRD--------VKWSGVDTGAAAGAPVWAWALVSCAPLR---------VVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKG-NIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            A+ SREFLR+L IGK V FKV+Y+  +  R FG++ + N    E +N +VA+EG+AKV     EG    +  +L++L A A A ++G+Y  P   ++        VKW+               A+     +R          ++E+VRDG+ +R  ++    MINFGLAG+ CPR+N   ++                                                TV Q  PFA EA+HF E RLL+R VD+ L+               GVDK+ N YG+VVH  G NI++EL+R+G ARMVDW+S +    V  AMRSAE EAK  +LR+WR + PP ++
Sbjct:   55 AYSSREFLRKLCIGKTVRFKVEYRVNVINRDFGSIWLQNAEGEEHVNTLVAQEGYAKVKQEGNEGSLTYDLGKLRQLEALAIAEKRGIYQDPNDTKEAEFGPHVAVKWT------------MNLAVEDAEAIRDENKDKLIPALVENVRDGAFMRVLLIPSMQMINFGLAGVQCPRMNTAVLS-----------------------------SLNHETPENALKEKGVDGNTVTQAAPFAREAKHFTEMRLLHRNVDVKLQ---------------GVDKFGNFYGSVVHPSGKNISMELLRNGFARMVDWSSQYTSITVRTAMRSAEKEAKLGKLRVWRDYQPPALQ 346          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A8K1CME8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CME8_PYTOL)

HSP 1 Score: 162 bits (411), Expect = 4.250e-41
Identity = 121/340 (35.59%), Postives = 175/340 (51.47%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMD------NESLNAVVAREGWAKVN----AREGDSATEAEELKRLGAAAEAARKGMYAGPG--RGRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVV---IEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKG-NIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTIK 969
            AW SREFLR+L IGKQV FKV+Y+     R FG+V +        E+   VVAREGWAKV     +R+G S  + E++ ++   A A +KGMY        + VKWSG D          A  L++    ++V   +E V++GSS+R  + +   ++NFGLAG+ CPR+ +P  A  A                                               + P+P A EA+HF ETRLL+R+VD+ LE               GVDKY NLYG++VH+ G NI+ EL+++GLARM DW++ F+       +R+AE EAK  +LR+W+ +  P ++
Sbjct:   55 AWASREFLRKLCIGKQVRFKVEYRVNAINRDFGSVWLPANARGVEENACVVVAREGWAKVKTVEQSRDGAS-PDHEKMLKVEQVAIAEKKGMYNDTEDVAHQSVKWSGAD----------AELLLAEHKGKLVPALVESVQNGSSMRVVLKSTMQLVNFGLAGVQCPRMTSPAGAEGA-----------------------------------------------EGPQPHAREAKHFTETRLLHRDVDLKLE---------------GVDKYGNLYGSIVHSSGKNISAELLKNGLARMADWSAGFVSDKSRSTLRAAEREAKADKLRVWKDYQAPVLQ 321          
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Match: A0A1V9YC11_9STRA (Nuclease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC11_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.650e-38
Identity = 115/330 (34.85%), Postives = 165/330 (50.00%), Query Frame = 1
Query:    4 AWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMDNESLNAVVAREGWAKVN----AREGDSATEAEELKRLGAAAEAARKGMYAGPGR--GRDVKWSGVDTGAAAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIACPRVNAPRVAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGGVRGVDKYDNLYGTVVHAKG-NIAVELVRSGLARMVDWTSAFLPRDVAIAMRSAENEAKRAQLRLWRGWTPPTI 966
            A+ SRE+LR L IGK V FKV+YK     R FG++ ++ E++  +VA+EGWAKV     +R+G S  + EE+ R    A+A +KG+YA  G      V W+G       G             +  +IE VRDG+++R  +++   +INF L+G+ CPRVN    AP A                                                 P PFA EA+ F E RLL+R++++ LE               GVDKY NLYG+VVH  G NI++EL+++GL +M DW+S FL  +    MR+AE  AK  +LR+W  + PP +
Sbjct:   55 AFASREYLRNLLIGKVVRFKVEYKVAAINRDFGSIYLNGENVCVLVAKEGWAKVKTLEQSRDGCS-PDLEEMLRHEQNAQAEKKGIYAEDGTKAALHVSWTGATGEELLGR-------FKGQQIPAIIEMVRDGAAMRVILLSTMQIINFALSGVQCPRVNP---APGAEATG---------------------------------------------PAPFAREAKLFTEMRLLHRKINVKLE---------------GVDKYGNLYGSVVHPSGHNISIELLKNGLGKMSDWSSEFLSVNTRTDMRNAEKSAKLLKLRVWVDYVPPVL 313          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351222 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7M1_9STRA1.870e-187100.00TNase-like domain-containing protein n=1 Tax=Tribo... [more]
A0A835YK22_9STRA1.480e-15092.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KXU2_9PHAE2.430e-5452.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TNM8_9STRA1.920e-5239.46Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5D6XGZ2_9STRA1.210e-4339.17Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024G1V6_9STRA5.050e-4236.28Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
K3X0E8_GLOUD1.230e-4135.61Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WDW0_9STRA1.270e-4134.48Nuclease putative n=1 Tax=Albugo laibachii Nc14 Ta... [more]
A0A8K1CME8_PYTOL4.250e-4135.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YC11_9STRA6.650e-3834.85Nuclease n=1 Tax=Achlya hypogyna TaxID=1202772 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:72..3080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351222|estExt_Genemark1.C_Ctg_840001
BRITEko00000,ko00001
KEGG Pathwayko05169,ko05203,map05169,map05203
KEGG koko:K15979
GOsGO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009266,GO:0009408,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009685,GO:0009686,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010371,GO:0010372,GO:0010467,GO:0010468,GO:0010494,GO:0010565,GO:0010605,GO:0010629,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016070,GO:0016071,GO:0016101,GO:0016102,GO:0016114,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019439,GO:0019747,GO:0019752,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034605,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043455,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046394,GO:0046483,GO:0046686,GO:0046700,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090351,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1990904
Descriptiongamete generation
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1525@1|root,KOG2039@2759|Eukaryota
Evalue1.04e-54
Seed ortholog2880.D8LGL1
Hectar predicted targeting categoryother localisation
TranscriptId351544
TrackFilteredModels1
ProteinId351222
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351222gene_12079Tribonema minus UTEX_B_3156 geneContig_84 72..3080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351222Trimin1|351222|estExt_Genemark1.C_Ctg_840001Tribonema minus UTEX_B_3156 polypeptideContig_84 72..3080 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12079_4exon_12079_4Tribonema minus UTEX_B_3156 exonContig_84 72..284 -
exon_12079_3exon_12079_3Tribonema minus UTEX_B_3156 exonContig_84 855..1272 -
exon_12079_2exon_12079_2Tribonema minus UTEX_B_3156 exonContig_84 1536..1558 -
exon_12079_1exon_12079_1Tribonema minus UTEX_B_3156 exonContig_84 2766..3080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12079CDS_12079Tribonema minus UTEX_B_3156 CDSContig_84 2766..3080 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12079 ID=mRNA_12079|Name=jgi.p|Trimin1|351222|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_84:72..3080- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGGAGAGCCGCGAGTTCCTGCGCCAGCTCACCATAGGCAAGCA
GGTCGCCTTCAAAGTCGACTACAAGGGCGGCATGCGCACCTTTGGCACGG
TGACCATGGACAATGAATCGCTCAACGCGGTCGTGGCGCGGGAGGGGTGG
GCGAAGGTGAACGCGCGCGAGGGCGACTCTGCGACGGAGGCGGAGGAGCT
GAAGCGCCTCGGCGCGGCGGCGGAGGCGGCAAGGAAGGGTATGTATGCAG
GGCCGGGGCGGGGGCGCGACGTGAAGTGGTCGGGCGTTGACACGGGCGCT
GCTGCAGGCGCACCGGTCTGGGCGTGGGCGCTGGTTTCGTGTGCGCCGCT
GCGCGTGGTCATCGAGCACGTGCGCGACGGCTCCAGCCTGCGCGCGTACG
TCGTCGCCGAGAGCGCCATGATCAACTTTGGCCTCGCGGGCATCGCGTGC
CCGCGTGTCAACGCTCCGCGCGTGGCGCCTCCCGCCGCCACGCCCCCCCC
CGCCGCTGCCTCCAGCGGAGAGGGCGGAGAGGCAGCGACTAACGGCGGCG
GCAGCGGCGGGGGGCCGGCGCCGGGCACCGCGGCGGCGGTGGCGGCGGCG
GCGCCGCCGGCCGCGGCGGCGACAGTAGATCAGCCGGAGCCGTTTGCGCT
GGAGGCGCGGCACTTTGTGGAGACGCGTTTGCTGAACCGCGAGGTGGACA
TACTGCTGGAGGCAAGTGGGGTGACGCAGTGGGGGGGGGAGCAGGGGGGG
GTCCGGGGAGTTGACAAGTACGACAACCTCTACGGCACGGTCGTGCACGC
CAAGGGCAACATTGCGGTGGAGCTCGTGCGCAGCGGGCTGGCGCGCATGG
TGGACTGGACGTCTGCCTTTCTGCCGCGCGACGTCGCCATCGCCATGCGC
TCCGCGGAGAACGAGGCCAAGCGCGCGCAGCTGCGGCTGTGGCGCGGCTG
GACGCCGCCCACGATCAAG
back to top

protein sequence of jgi.p|Trimin1|351222

>Trimin1|351222|estExt_Genemark1.C_Ctg_840001 ID=Trimin1|351222|estExt_Genemark1.C_Ctg_840001|Name=jgi.p|Trimin1|351222|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
MAWESREFLRQLTIGKQVAFKVDYKGGMRTFGTVTMDNESLNAVVAREGW
AKVNAREGDSATEAEELKRLGAAAEAARKGMYAGPGRGRDVKWSGVDTGA
AAGAPVWAWALVSCAPLRVVIEHVRDGSSLRAYVVAESAMINFGLAGIAC
PRVNAPRVAPPAATPPPAAASSGEGGEAATNGGGSGGGPAPGTAAAVAAA
APPAAAATVDQPEPFALEARHFVETRLLNREVDILLEASGVTQWGGEQGG
VRGVDKYDNLYGTVVHAKGNIAVELVRSGLARMVDWTSAFLPRDVAIAMR
SAENEAKRAQLRLWRGWTPPTIK
back to top

mRNA from alignment at Contig_84:72..3080-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12079 ID=mRNA_12079|Name=jgi.p|Trimin1|351222|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3009bp|location=Sequence derived from alignment at Contig_84:72..3080- (Tribonema minus UTEX_B_3156 )
ATGGCGTGGGAGAGCCGCGAGTTCCTGCGCCAGCTCACCATAGGCAAGCA GGTCGCCTTCAAAGTCGACTACAAGGGCGGCATGCGCACCTTTGGCACGG TGACCATGGACAATGAATCGCTCAACGCGGTCGTGGCGCGGGAGGGGTGG GCGAAGGTGAACGCGCGCGAGGGCGACTCTGCGACGGAGGCGGAGGAGCT GAAGCGCCTCGGCGCGGCGGCGGAGGCGGCAAGGAAGGGTATGTATGCAG GGCCGGGGCGGGGGCGCGACGTGAAGTGGTCGGGCGTTGACACGGGCGCT GCTGCAGGCGCACCGGTGAGCAGGGTGGCAGCGGGCAAACGGAATCTGTG TTGTGAGCATGCGAGCGTGCGTCATGTTGACATGAAGAACTATTCAGACA TGAGCGCAATCTGGAGCTGAAGTTGATGCGATCTCATGCAGGTACACACC GTAACCCCATGCGTGTAGGCCTTGTATGTGGTTGATTGATTGATTGGCAG TTTGTGCTTGCACATGAGACTTGGTCCGCCATACGGCTCAGTCGAGCGTA GCTCAAGGGCTTGCAGGTTTGGGCTACGATAGGGCAAGGCAGTTCATTCA TTGCATTGGTTGGGGCAGGTCAGGTCAGTTTATCTGGTGAGCATCACCCC CTCTTCTGGCCTTTTGACCGACCCTTTATCGTGTTGCACTTAATTTCTAG CCTTTGCTTGGAGATCAACATACCATTTGTGAGCTTCTCAGTGGTGCGTT CATGAGCATTCAGCCTCATGTACACAGCTAAGACCTACTGTAGAACCTGC GATCATGACCCAAACTTCAACCTACCCCTAACTTGAACCCTACAGTACAT ATTGCAGCTAATCCTATCGTTTGATCTGTGCTAGTTTGCTTTATTGCGTT AGTGCTTTCCCTAATTGCAAGTGAAAGTGTTCATCAGTGTCGAGTCGCCT CAATACGCTAATGTTGCTGTATTGCAGTGGCGTGCTCACTTGTTTGTTTC GGCATAGCTGACGGATGTATGTCAAGTGGCATTGACGTGTGTCAGTTGCA CATAAAACTGACACACCGCCTTGAAGTACAAGTATGAAGGACTCAGAGGC AGTATAGAACATGAAACGCCTGTCCTGTTTGGCAGTACCCAGCTTCTGCG GCATGACGCGTGTCGCGCATCGAGAGCCTATATTGTGTGCTACGGTGCAG CGTCAACATGCACAACATTGCTGACAATATTGGCATATGCACATCCCTCT GGAAGGCAACCTAAACACAAACTTCAACTACACCAGCCTCTACCTCATGT TGCACGCCATCATGGCGCACGCTTGCGGACTGCAGCCTGCGCCCTGGCAA TACCATTGTGTACATGTGTGCTTCAGCTCATATTCAGCCATGTTCCCCAA GGGGTGCGTCCTGTACCGACACCAGCCCCTGTGCGCCTGAGCATCACCAT CAAGCGCGTGCACGACAGCTCGTGCATGCGAGCGATGTACACGCGCTCGC GTAATGTGTGGTCATAACTCAGGTCTGGGCGTGGGCGCTGGTTTCGTATG ATGGACAGCATCACGCGCATACACGCAACAACGCGCGCCGCCAGCAGCGC GCGCACCGCGGCACTTGACACACCTGCACGCGGGCGTCTAACCCTGGTAG ATGTGCAGGCACTGGCGCACTGTATTTGTACCACCGTCTACCATCGCCTG GACTGCGCTAATCGGCCTTGCATCGACGCATCTGGCGCTGTCTGCCGCTT TGGCGAGGTCGCCGTGTCAACCCAACCCTAATTTCAAACCCTAACCCCCT ACACGCAGGTGTGCGCCGCTGCGCGTGGTCATCGAGCACGTGCGCGACGG CTCCAGCCTGCGCGCGTACGTCGTCGCCGAGAGCGCCATGATCAACTTTG GCCTCGCGGGCATCGCGTGCCCGCGTGTCAACGCTCCGCGCGTGGCGCCT CCCGCCGCCACGCCCCCCCCCGCCGCTGCCTCCAGCGGAGAGGGCGGAGA GGCAGCGACTAACGGCGGCGGCAGCGGCGGGGGGCCGGCGCCGGGCACCG CGGCGGCGGTGGCGGCGGCGGCGCCGCCGGCCGCGGCGGCGACAGTAGAT CAGCCGGAGCCGTTTGCGCTGGAGGCGCGGCACTTTGTGGAGACGCGTTT GCTGAACCGCGAGGTGGACATACTGCTGGAGGCAAGTGGGGTGACGCAGT GGGGGGGGGAGCAGGGGGGGGTCCGGGTGCGCAGGCGGTGTGCTGCTTCG TTGGGCACGATGCAGTGAGCGCTGTTTGGCGCGGCACGTGTTGGGGTGCG GGTGTCGTGTGGCAGTTCGCGCAGCGCTGGGTAGAGCTGCTGTGCGCCGC GTGCGACGTAGTGTCTCCCCTTTGCGTGCCAGCATGAGGGCGGCTGAAGG GCGGCCCTGCGATGGCTGAGCAGTGCTGCCATTATCATTATTTTTTTGTG CATCAGCACGCCGTTTATGCCATCAGCATCAGCACAGCCCTGTCGTACGT CCTTGTCGCCGCACCGCCAGTAGCCGCTCTCCGTATGTTTGGTTTTTATC CATGCTGTTGTTTGTCAAACGCGACAGTGTGCGCAACGTAGCGCGCATGC CGGACCGCCGCGCTGACCTGACGACGTGGTGACGCCGCACTCCACAACTT CAACTTAATACTCATAACTTCATCTTCACATCACGCTACCGTCCATGCGC ATGCTGATCGCCGCACTGACCTCACGACGCAGTGACGTGCACCACACAAT TTCAACTTTAACTTCACCCCCCCCCCCCCCTCCCCTTGACGCTCAGGGAG TTGACAAGTACGACAACCTCTACGGCACGGTCGTGCACGCCAAGGGCAAC ATTGCGGTGGAGCTCGTGCGCAGCGGGCTGGCGCGCATGGTGGACTGGAC GTCTGCCTTTCTGCCGCGCGACGTCGCCATCGCCATGCGCTCCGCGGAGA ACGAGGCCAAGCGCGCGCAGCTGCGGCTGTGGCGCGGCTGGACGCCGCCC ACGATCAAG
back to top

Coding sequence (CDS) from alignment at Contig_84:72..3080-

>mRNA_12079 ID=mRNA_12079|Name=jgi.p|Trimin1|351222|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_84:72..3080- (Tribonema minus UTEX_B_3156 )
ATGGCGTGGGAGAGCCGCGAGTTCCTGCGCCAGCTCACCATAGGCAAGCA
GGTCGCCTTCAAAGTCGACTACAAGGGCGGCATGCGCACCTTTGGCACGG
TGACCATGGACAATGAATCGCTCAACGCGGTCGTGGCGCGGGAGGGGTGG
GCGAAGGTGAACGCGCGCGAGGGCGACTCTGCGACGGAGGCGGAGGAGCT
GAAGCGCCTCGGCGCGGCGGCGGAGGCGGCAAGGAAGGGTATGTATGCAG
GGCCGGGGCGGGGGCGCGACGTGAAGTGGTCGGGCGTTGACACGGGCGCT
GCTGCAGGCGCACCGGTCTGGGCGTGGGCGCTGGTTTCGTGTGCGCCGCT
GCGCGTGGTCATCGAGCACGTGCGCGACGGCTCCAGCCTGCGCGCGTACG
TCGTCGCCGAGAGCGCCATGATCAACTTTGGCCTCGCGGGCATCGCGTGC
CCGCGTGTCAACGCTCCGCGCGTGGCGCCTCCCGCCGCCACGCCCCCCCC
CGCCGCTGCCTCCAGCGGAGAGGGCGGAGAGGCAGCGACTAACGGCGGCG
GCAGCGGCGGGGGGCCGGCGCCGGGCACCGCGGCGGCGGTGGCGGCGGCG
GCGCCGCCGGCCGCGGCGGCGACAGTAGATCAGCCGGAGCCGTTTGCGCT
GGAGGCGCGGCACTTTGTGGAGACGCGTTTGCTGAACCGCGAGGTGGACA
TACTGCTGGAGGCAAGTGGGGTGACGCAGTGGGGGGGGGAGCAGGGGGGG
GTCCGGGGAGTTGACAAGTACGACAACCTCTACGGCACGGTCGTGCACGC
CAAGGGCAACATTGCGGTGGAGCTCGTGCGCAGCGGGCTGGCGCGCATGG
TGGACTGGACGTCTGCCTTTCTGCCGCGCGACGTCGCCATCGCCATGCGC
TCCGCGGAGAACGAGGCCAAGCGCGCGCAGCTGCGGCTGTGGCGCGGCTG
GACGCCGCCCACGATCAAG
back to top