mRNA_12073 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A835YIV1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIV1_9STRA) HSP 1 Score: 345 bits (885), Expect = 4.380e-120 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1
Query: 1 VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS
Sbjct: 1 VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 176
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A836CHG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG6_9STRA) HSP 1 Score: 150 bits (379), Expect = 7.460e-39 Identity = 89/177 (50.28%), Postives = 110/177 (62.15%), Query Frame = 1
Query: 4 WRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPA--AAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
WR + LAF LLLRASE+WAY+ G VHP FCV+A DV F R +PA A +AD A IR SKTDQ R G+ +TA GG DP+ + A ++ ALP A P ++VA A + + E +IR+L + G Q GTHSMRVG ATTLAHAGVP RLI+ AG+WRS
Sbjct: 187 WRCILLAFHLLLRASELWAYNG-GHVHPHFCVRACDVQFALGARAVPAIQALSGSADRAFITIRASKTDQYRHGAVLTITATDGGPFDPLHVAAALLVALPPYAPPDCPTVTVAHGATDLRTITHGETTHMIRTLVAQHGGATSQLGTHSMRVGAATTLAHAGVPERLIKLAGQWRS 362
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE) HSP 1 Score: 102 bits (254), Expect = 7.730e-23 Identity = 67/183 (36.61%), Postives = 92/183 (50.27%), Query Frame = 1
Query: 4 WRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAA-----GGGLADPV---RIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
W G+AL++FLL RASE+WAYH+ GLVH DFC+ G++ F L AD R SK DQ R G+ GG +A+ + I +++ P + + SV + G + R EA +R +A R G +P + HS R+GGAT LA G G IQ GRW+S
Sbjct: 137 WMGIALSYFLLCRASELWAYHN-GLVHADFCLTRGNLVFFEGSCQLAWDERRRADRVEVTFRASKADQKRRGAIVTRERVMRDEEGGQMAEKIGALEILLNLLDVHPELGSTAPLMQSV--KQGRWAVVSRSEATAALRDMARRVGENPTHFALHSGRIGGATQLAKQGASGVQIQRVGRWKS 316
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.080e-16 Identity = 65/180 (36.11%), Postives = 89/180 (49.44%), Query Frame = 1
Query: 1 VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGS--TAVLTAAGGGLADPVRIFADVVAALPA--AATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
+W G+AL +FLL RASE++AY +DGLVHP+FC+ + F R + AD + SK DQ R G T + G PV F VVA L PL++ T +G + R E +R + GL+P + HS R+G AT +A G+ IQ AGRW+S
Sbjct: 136 MWLGLALTYFLLCRASELFAY-ADGLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDGRSITRGRSPLGPDGEVPVGAFEAVVAILDVHPELPGNAPLLTRQTPSGW-RVITRTEGVAALRVMVESIGLNPAHFALHSGRIGAATQMAAQGLSALQIQHAGRWKS 313
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6A3MMJ4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MMJ4_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 5.110e-15 Identity = 64/186 (34.41%), Postives = 83/186 (44.62%), Query Frame = 1
Query: 1 VWRGVALAFFLLLRASEIW--AYHSDGLVHPDFCVQAGDVHFRRQ-GRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAG-------GIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
VW V LAFF L R+SE+W D P CV+A DV R Q G L G A A I R K DQ R G+T +G L PV A A +H + + G A+++ E + ++ A R L+P Y THS+R+GGA L AG +I+ GRW S
Sbjct: 70 VWASVVLAFFFLSRSSEMWEPTKRDDLETAPTHCVRAADVVLRDQRGNVLDNRRGSAAS-AEIIYRSHKGDQRRQGTTVRHYRSGQRLPCPVE-------AAEACLRVRHQWQAAGKQLGIYLSSVSSATAIRKSEVSIFLKEAAKRLQLNPDDYATHSIRIGGACALLAAGKSELVIRLMGRWAS 247
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 9.030e-15 Identity = 63/189 (33.33%), Postives = 93/189 (49.21%), Query Frame = 1
Query: 4 WRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLT------------AAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGG-IGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAG-VPGRLIQAAGRWRS 528
W ++L++F + R+ E++A +S G+VHP C+ DV F R R L AD RG K DQ ++G T A GG +A +VA+L AT + R+G + LK +A +R + R G +P+ + HS+R+GGA+TLA G V R+IQ GRW+S
Sbjct: 238 WLCLSLSYFFITRSDEMFA-NSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVAL-------MVASLSCHATLPDSAPLSSYRSGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWKS 418
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A0M0JQ72_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQ72_9EUKA) HSP 1 Score: 79.3 bits (194), Expect = 3.300e-14 Identity = 61/176 (34.66%), Postives = 86/176 (48.86%), Query Frame = 1
Query: 10 GVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGG-LADPVRIFADVVAALPAAATAQH--PLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
++ AF LLRA+E+ A HP+ + DV F H A A ++R K + G T + AGGG L DPV ++ A P +H PL + R G G+L + + I++L GLDP ++G HS+R+GGAT A AGVP +I+ GRW S
Sbjct: 155 ALSTAFCGLLRAAEM-ALQPGETWHPELNLSRADVKFHYDE--------HGAIYAVLMMRPCKNGKYMRGKTVPIVLAGGGTLIDPVSALWELYAGDPVPEAVEHVTPLFRLRGR-GTTGSLTVDQVRIEIKTLMSSLGLDPARFGAHSLRIGGATAAAAAGVPPSVIRVMGRWNS 320
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6A4BWZ4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BWZ4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.520e-13 Identity = 61/175 (34.86%), Postives = 80/175 (45.71%), Query Frame = 1
Query: 1 VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGA-LKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRW 522
+W + FF +L+ SE Y +D ++ +Q DV FR L A A RG K DQ VG+T L +G G PV+ +V T L+ + +G L L I+ A R GLDPR YGTHSMR GGAT + AGV +I+ GRW
Sbjct: 68 LWGAAVMGFFFMLKRSE---YLADNTRIKNYAIQCLDVSFRTTTVQLATTRAEAALVA-IHFRGGKADQKGVGATRTLGKSGVGWLCPVQACWTLVRLAKIRHTQDGELLCTTS----LGTPLTTAAMTLAIKQAASRAGLDPRAYGTHSMRSGGATAMFGAGVDRLVIKHFGRW 234
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6G0SBC9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SBC9_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.180e-13 Identity = 63/186 (33.87%), Postives = 81/186 (43.55%), Query Frame = 1
Query: 1 VWRGVALAFFLLLRASEIW--AYHSDGLVHPDFCVQAGDVHFRRQ-GRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAG-------GIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
VW V LAFF L R+SE+W D P CV+A DV R Q G L G +A A I R K DQ R G+T G L PV A A +H + + G A+++ E + ++ R L+P Y THS+R+GGA L AG +I GRW S
Sbjct: 158 VWASVVLAFFFLSRSSEMWEPTKRDDLETAPTHCVRAADVVLRDQRGNVLDNRRG-SAVSAEIIYRSHKGDQRRQGTTVRHYRTGQRLPCPVE-------AAEACLRVRHQWQAAGKQLGIYLSSVSSATAIRKSEVSIFLKEATKRLQLNPDDYATHSIRIGGACALLVAGKSELVIHLMGRWAS 335
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Match: A0A6A4G4Z9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G4Z9_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.790e-13 Identity = 59/178 (33.15%), Postives = 77/178 (43.26%), Query Frame = 1
Query: 1 VWRGVALAFFLLLRASEIW--AYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQLRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAGVPGRLIQAAGRWRS 528
VW V LAFF L R+SE+W D P CV+A DV R Q L +A A I R K DQ R G+T +G L PV + A L + ++ E +L++ A R L+P Y THS+R+GGA L G +I+ GRW S
Sbjct: 257 VWASVVLAFFFLSRSSEMWEPTKRDDLETAPTHCVRAADVVLRDQRGNLLDNHRGSAASAEIIYRSHKGDQRRQGTTIRHYRSGQRLLCPVEAAETCLRVRHQWQAAGKQLGIYLSSVSSATTNRKSEVSILLKEAAKRLQLNPYDYATHSLRIGGACALLATGKSELVIRLMGRWAS 434 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153337 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12073 ID=mRNA_12073|Name=jgi.p|Trimin1|153337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_93:548983..549510+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCTGGCGCGGCGTTGCCCTGGCCTTCTTCCTCCTCCTGCGTGCGTCAGAback to top protein sequence of jgi.p|Trimin1|153337 >Trimin1|153337|gw1.93.64.1 ID=Trimin1|153337|gw1.93.64.1|Name=jgi.p|Trimin1|153337|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAback to top mRNA from alignment at Contig_93:548983..549510+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12073 ID=mRNA_12073|Name=jgi.p|Trimin1|153337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_93:548983..549510+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_93:548983..549510+ >mRNA_12073 ID=mRNA_12073|Name=jgi.p|Trimin1|153337|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_93:548983..549510+ (Tribonema minus UTEX_B_3156 )back to top |