mRNA_12065 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A835YJ13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ13_9STRA) HSP 1 Score: 457 bits (1177), Expect = 9.910e-163 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1 Query: 1 MTNKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDVRGGAAEAQAEGRARAAEPLEK 696 MTNKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDVRGGAAEAQAEGRARAAEPLEK Sbjct: 1 MTNKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDVRGGAAEAQAEGRARAAEPLEK 232
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A835YZH5_9STRA (DRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH5_9STRA) HSP 1 Score: 402 bits (1032), Expect = 1.310e-125 Identity = 201/211 (95.26%), Postives = 203/211 (96.21%), Query Frame = 1 Query: 1 MTNKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDV 633 M NKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVL EGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSA VAAMLLKLIQDPAT GVAGEQLLQLLSVLARDLQSAFHPHFAPS DVLAALLQGPAGDEPEAAGRVMRAVGYILKF+ RPLL DPAALRAYYAPLLGHRRDYVRRYAG+ Sbjct: 1 MANKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLPEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSATVAAMLLKLIQDPATHGVAGEQLLQLLSVLARDLQSAFHPHFAPSMDVLAALLQGPAGDEPEAAGRVMRAVGYILKFDIRPLLEDPAALRAYYAPLLGHRRDYVRRYAGET 211
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI) HSP 1 Score: 224 bits (571), Expect = 1.150e-63 Identity = 116/198 (58.59%), Postives = 142/198 (71.72%), Query Frame = 1 Query: 31 NSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYA 624 N+ G NRFKF K++RA+R+DVDV+HKVR G+LD D + E EGG FFQ EL+R K++N TPPFKRFYY VWPLVQSL ELLHH+ V MLL L++DP + AGE+ LQLLSVLARDLQS+F PHF L L+ P PE GRV+R +G++LKF RPL D AA+RA YAPLLGH+RD+ R+ A Sbjct: 13 NTTGGSNRFKFQGKQARAKRIDVDVAHKVRAEGFLDADKAQNPEV-EGGSFFQQELDRSKELNVTPPFKRFYYKVWPLVQSLPELLHHAPAVVDMLLALLEDPVVVTQAGEETLQLLSVLARDLQSSFFPHFPRVSTALIGLIASP-DVSPEICGRVLRCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMA 208
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A6H5JFX0_9PHAE (DRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.880e-63 Identity = 115/198 (58.08%), Postives = 142/198 (71.72%), Query Frame = 1 Query: 31 NSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYA 624 N+ G NRFKF K++RA+R+DVDV+HKVR G+LD D + E EGG FFQ EL+R K++N TPPFKRFYY VWPLVQSL ELLHH+ V MLL L++DP + AGE+ LQLLSVLARDLQS+F PHF L L+ P PE GRV+R +G++LKF RPL D AA+RA Y+PLLGH+RD+ R+ A Sbjct: 13 NTTGGSNRFKFQGKQARAKRIDVDVAHKVRAEGFLDADKAQNPEV-EGGSFFQQELDRSKELNVTPPFKRFYYKVWPLVQSLPELLHHAPAVVDMLLALLEDPVVVTQAGEETLQLLSVLARDLQSSFFPHFPRVSTALIGLIASP-DVSPEICGRVLRCLGFLLKFVARPLSKDMAAVRALYSPLLGHKRDFARKMA 208
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A1Y1HR11_KLENI (Down-regulated in metastasis family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR11_KLENI) HSP 1 Score: 99.8 bits (247), Expect = 2.600e-20 Identity = 73/208 (35.10%), Postives = 101/208 (48.56%), Query Frame = 1 Query: 10 KSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDV 633 KSLN + S G RF F + R VDVDV + V + E G FFQ+ L + +++NT F Y V+PLVQSL +LL H V LL + A L + E +L L++VL+RDL+ F P AP LL+G A EP+ ++ +V Y+ K + L D Y + HRRDYVR +A + Sbjct: 8 KSLNKSY-SGPGTKRFVFKSFAQRVASVDVDVFRSLAPVKF---------EPTAGTSFFQENLLQWRELNTAADFNLLYGEVYPLVQSLPQLLLHKKTVVRALLARMHIGALLSL--EPVLSLIAVLSRDLREDFLPFVAPFLGACLRLLEGGADREPDVLEQIFTSVSYVFKHLVKYLAKDLTQALKYTRLIRYHRRDYVRDFAAEA 203
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A7R9YFR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFR7_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 4.540e-20 Identity = 73/202 (36.14%), Postives = 102/202 (50.50%), Query Frame = 1 Query: 52 RFKFLNKKSRARRVDVDVSHKVRTVGYLDGDT------SVLLEGGEGG--CFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAP-SKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLAD--PAALRAYYAPLLGHRRDYVRRYA 624 R +F ++ + R+ V K+R G L D S LE G C EL+R +++N P +KR YY +WPLVQSLA +LHH + LL L+ P+ A LQL +V+A+DLQ P F SK +L A+ D+ E + + +GY+L+F A PA L Y P LGH RDY+R+ A Sbjct: 28 RRRFRSEAYKLRKASVAPGEKLREEGGLRSDALDAGAVSAELESSFSGQRCALAVELDRQRELNIAPLWKRSYYELWPLVQSLAHVLHHRDAILERLLLLLAAPSPPCKATA--LQLAAVMAKDLQEELLPAFPKLSKAILTAV----DVDDAELSTKAFETLGYVLRFLAERSGAGKLPALLTPLYGPFLGHSRDYIRKLA 223
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A2P6NS46_9EUKA (UTP20, small subunit (SSU) processome component n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NS46_9EUKA) HSP 1 Score: 92.4 bits (228), Expect = 8.580e-18 Identity = 58/200 (29.00%), Postives = 102/200 (51.00%), Query Frame = 1 Query: 34 SQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDV 633 + GNRFK+ + + VDVD+ HK+ G ++ L +F++ L + +N T F F V+P+ SLA++L+H + +L+K +Q P +L +A LL L L+RDLQ F+P + L+ +L +PE + + +GY K+ + ++ D + +Y+ L+ HR DYV+ ++ V Sbjct: 422 ASESGNRFKYQGRNEKIAEVDVDIFHKI-------GGITIKLSDPTSS-YFRESLHQWTDLNLTRDFLNFSTEVYPISNSLAQILYHKKDIHGILIKHLQVPDSLALA--PLLNLACQLSRDLQEEFYPMMEETIKTLSKVLDSKLL-QPEILESIFQTIGYFFKYLHKHVIQDINHVWSYFYSLVSHRDDYVKSWSAQV 610
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A8J9RGR5_9CHLO (Probable small subunit processome component 20 homolog at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RGR5_9CHLO) HSP 1 Score: 87.4 bits (215), Expect = 3.470e-16 Identity = 71/189 (37.57%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 79 RARRVDVDVSHK--VRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGDVRG 639 R VDVDV + VR+ L G TS FFQ+EL++ ++++TT F + A+ PLVQ+L +L+HH V +LL ++ A L + E +L LLSVLARDL F P+ + L L++ A EPE V + + + R L AD AA A A L HR D+VRR A G Sbjct: 32 RVAEVDVDVYRRAPVRSEP-LPGATS----------FFQEELQKMRELHTTSDFLQAAAALNPLVQTLPQLVHHKDAVVEILLGAVRMDAALSL--EPILALLSVLARDLLDDFVPYVPRVINALTNLVEQGADREPELLQHVFGCLSSLFRHLVRQLAADLAAQLARTARLRYHRADHVRRLAAQSAG 207
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A6P8IRZ2_ACTTE (small subunit processome component 20 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IRZ2_ACTTE) HSP 1 Score: 85.9 bits (211), Expect = 1.510e-15 Identity = 63/196 (32.14%), Postives = 102/196 (52.04%), Query Frame = 1 Query: 49 NRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLK-LIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLG-HRRDYVRRYAGD 630 N FKF R + +D+SH+V E E F + L + +++N T F+ F + PLVQ+LA+L+HH V A+L K L+Q+ +L + E LL ++ ++RDLQS F+PHF +V LL D E + A+GY+ KF R ++ D + Y+ LL H++ Y++++A + Sbjct: 8 NPFKFQXFSERIANIRLDISHRVE---------KRASEPEETETFCNEALNKWRELNCTVQFQEFCKEISPLVQTLAQLVHHEQTVIAILQKYLLQEGNSLAM--EPLLDVVVQISRDLQSDFYPHFKDFFNVFVTLLNRYXLDS-EILELIFTALGYLFKFLWRYMVKDIENVFKLYSSLLSTHQKPYIQQFAAE 191
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Match: A0A1J6I167_NICAT (DRIM domain-containing protein n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1J6I167_NICAT) HSP 1 Score: 82.8 bits (203), Expect = 1.720e-14 Identity = 59/200 (29.50%), Postives = 96/200 (48.00%), Query Frame = 1 Query: 31 NSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSVLLEGGEGGCFFQDELERCKQMNTTPPFKRFYYAVWPLVQSLAELLHHSAMVAAMLLKLIQDPATLGVAGEQLLQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYAGD 630 N G RF F R VDVDV R++ L + S EG FF+D L +++NT F FY ++PLVQ+L +++ H + A LL + L + E +L+L++ L+RDL F P D LA LL+ A EP+ ++ ++ +I+ + + L+ D + L + ++YV + D Sbjct: 14 NKSPGRRRFTFKTFSERIEDVDVDV---YRSLDPLKAEPS------EGSSFFRDCLVEWRELNTAEDFISFYEEIFPLVQTLPQIILHKEQIVAKLLSRLDMKGRLSL--EPILRLIAALSRDLLENFLPFLQRIADSLACLLKSGADREPDIIEQIFKSWSFIMMYLQKYLVKDVVDVLKVTVKLRYYSKEYVHEFMAD 202 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338867 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12065 ID=mRNA_12065|Name=jgi.p|Trimin1|338867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_93:491412..492110- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACCAACAAAAGCCTCAACCCCGACTGGAACTCACAGAGCGGAGGCAAback to top protein sequence of jgi.p|Trimin1|338867 >Trimin1|338867|MIX47630_1_21 ID=Trimin1|338867|MIX47630_1_21|Name=jgi.p|Trimin1|338867|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp MTNKSLNPDWNSQSGGNRFKFLNKKSRARRVDVDVSHKVRTVGYLDGDTSback to top mRNA from alignment at Contig_93:491412..492110- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12065 ID=mRNA_12065|Name=jgi.p|Trimin1|338867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_93:491412..492110- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_93:491412..492110- >mRNA_12065 ID=mRNA_12065|Name=jgi.p|Trimin1|338867|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_93:491412..492110- (Tribonema minus UTEX_B_3156 )back to top |