mRNA_12043 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172457
Unique NamemRNA_12043
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A835YIT2_9STRA (G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIT2_9STRA)

HSP 1 Score: 220 bits (561), Expect = 5.840e-73
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLHVARQVRARVWC 315
            MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLHVARQVRARVWC
Sbjct:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLHVARQVRARVWC 105
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A7S0YTR8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YTR8_9CRYP)

HSP 1 Score: 119 bits (298), Expect = 8.050e-32
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGL 276
            MGKSS++N++ GR+ VS+S +PGHTKH+QT  +   +  CDSPG+V PQVGVPRA QV+FG +PIAQ+REP++ VR +AE C P +PA F L
Sbjct:   23 MGKSSVMNSIFGRKVVSSSRSPGHTKHIQTNFLNPGVCFCDSPGIVSPQVGVPRAYQVLFGSFPIAQLREPYSAVRIVAESCEPSIPALFRL 114
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A813DWA4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DWA4_POLGL)

HSP 1 Score: 123 bits (309), Expect = 6.980e-31
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGL 276
            MGKSS++N + GR+ VS+SATPGHTKH QT+ +++ +  CDSPGVV P++ VP+ALQV+FG Y IAQVREPF  VRFIAEHC PPL +   L
Sbjct:  298 MGKSSIINAVFGRKLVSSSATPGHTKHFQTLFLSRGVCFCDSPGVVCPKLAVPKALQVVFGSYRIAQVREPFHIVRFIAEHCHPPLASILKL 389
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A7S0Y0A9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y0A9_HEMAN)

HSP 1 Score: 116 bits (291), Expect = 2.560e-30
Identity = 52/92 (56.52%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGL 276
            MGKSS++N++ G++ VS+S TPGHTKH+QT  +T+ +  CDSPG+V PQ GVP++ Q +FG YPIAQ+REP++ VR IAE C PPL   + L
Sbjct:   52 MGKSSVMNSIFGQKMVSSSRTPGHTKHIQTHFLTQSVCFCDSPGIVSPQTGVPKSYQALFGSYPIAQLREPYSAVRHIAEACQPPLQDLYRL 143
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A7S4NPW6_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NPW6_GUITH)

HSP 1 Score: 119 bits (298), Expect = 4.220e-29
Identity = 55/92 (59.78%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGL 276
            MGKSS++N++ G++ VS+S+TPGHTKH QT+ +TK +  CDSPGVV P++ +PR LQVIFG Y IAQVREP++ +RFIAE C PPL   + L
Sbjct:  343 MGKSSVINSIFGKKVVSSSSTPGHTKHFQTLFLTKRVCFCDSPGVVCPKLKIPRTLQVIFGSYRIAQVREPYSIIRFIAEKCDPPLSEVYAL 434
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A7S1B1N0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1B1N0_NOCSC)

HSP 1 Score: 114 bits (285), Expect = 4.900e-28
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPL 258
            MGKSS++N + G + VS+SATPGHTKH QT+ +++ +  CDSPG+V P++ VP+A+QVIFG + IAQVREP+  VRFIAE C+PPL
Sbjct:  139 MGKSSVINAVFGEKLVSSSATPGHTKHFQTLFLSRGVCFCDSPGIVCPKLHVPKAVQVIFGSFRIAQVREPYHVVRFIAERCYPPL 224
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A5D6XG31_9STRA (CP-type G domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG31_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.930e-27
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKD-----------LVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGL 276
            +GKSSLLN L GR+ VS SATPGHTKHLQT    +            +VLCD PGVV P+ GVP ALQ +FG +PIAQ REPF+ VRFIAE+C PPL   + L
Sbjct:  304 VGKSSLLNALFGRKLVSVSATPGHTKHLQTHFFERAELLERGDAFRRVVLCDCPGVVFPRFGVPVALQTLFGSFPIAQTREPFSAVRFIAENCVPPLHELYKL 406
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BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A3M6VTC7_9STRA (G domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTC7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.300e-26
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTK------------DLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLHVARQVRARVWC 315
            +GKSSLLN+L GR+ VS SATPGHTKH+QT +  +             +++CD PGVV P+  VP  LQ++FG +PIAQ REPF+ VRFIAE+C P L   + L HV       VWC
Sbjct:  286 VGKSSLLNSLFGRKLVSVSATPGHTKHMQTHYFDRVEMLERNDNTYSRILMCDCPGVVFPRFNVPVLLQILFGSFPIAQTREPFSVVRFIAENCVPHLHEVYKLKHVEED-DDDVWC 401
[Close]
BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: F4PMX1_CAVFA (Guanine nucleotide binding protein 1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PMX1_CAVFA)

HSP 1 Score: 111 bits (278), Expect = 2.240e-26
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLH 282
            +GKSSL+N L+G++ VSTS TPGHTKH QT+ +TK +VLCD PG+V P +  P++LQV+ GLYPIAQVREP++ +R++A+    P+   +GL H
Sbjct:  439 VGKSSLINGLMGKKVVSTSRTPGHTKHFQTIFLTKGIVLCDCPGLVFPALDRPKSLQVLCGLYPIAQVREPYSAIRYLADRV--PIEKVYGLQH 530
[Close]
BLAST of jgi.p|Trimin1|172457 vs. uniprot
Match: A0A7S0UNJ5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UNJ5_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 7.720e-26
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    1 MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQVGVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLHVARQ 294
            +GKS+ +N LLG  RV+ S+ PG TKH QT  +   L+LCD PG+V P++GVP A+QV++G +PIA+  +P+  VR++AE  WP L    GL  VA +
Sbjct:   74 VGKSTTVNALLGAHRVAVSSHPGRTKHYQTHRMASRLLLCDCPGLVFPRIGVPVAVQVLYGSFPIAKASDPYAVVRYLAERIWPRLHVTLGLRRVAEE 171
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172457 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIT2_9STRA5.840e-73100.00G domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A7S0YTR8_9CRYP8.050e-3258.70Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A813DWA4_POLGL6.980e-3163.04Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0Y0A9_HEMAN2.560e-3056.52Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4NPW6_GUITH4.220e-2959.78Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
A0A7S1B1N0_NOCSC4.900e-2860.47Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A5D6XG31_9STRA3.930e-2758.25CP-type G domain-containing protein n=1 Tax=Pythiu... [more]
A0A3M6VTC7_9STRA1.300e-2650.43G domain-containing protein n=1 Tax=Peronospora ef... [more]
F4PMX1_CAVFA2.240e-2655.32Guanine nucleotide binding protein 1 n=1 Tax=Caven... [more]
A0A7S0UNJ5_9CHLO7.720e-2647.96Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_93contigContig_93:265403..266493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172457|e_gw1.93.33.1
DescriptionSource PGD
COG categoryO
Max annot lvl121069|Pythiales
EggNOG OGsCOG1161@1|root,KOG1424@2759|Eukaryota,1MBHM@121069|Pythiales
Evalue1.77e-26
Seed ortholog65071.PYU1_T010029
Hectar predicted targeting categorymitochondrion
TranscriptId172779
TrackFilteredModels1
ProteinId172457
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172457gene_12043Tribonema minus UTEX_B_3156 geneContig_93 265403..266493 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12043_1exon_12043_1Tribonema minus UTEX_B_3156 exonContig_93 265403..265507 +
exon_12043_2exon_12043_2Tribonema minus UTEX_B_3156 exonContig_93 266281..266493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12043CDS_12043Tribonema minus UTEX_B_3156 CDSContig_93 265403..265507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172457Trimin1|172457|e_gw1.93.33.1Tribonema minus UTEX_B_3156 polypeptideContig_93 265403..266493 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12043 ID=mRNA_12043|Name=jgi.p|Trimin1|172457|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_93:265403..266493+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGTCATCGCTGCTCAACACGCTGCTGGGCAGGCGGCGTGTCAG
CACCAGCGCGACGCCCGGGCACACCAAGCACCTGCAGACGATGCACGTCA
CCAAGGACCTGGTGCTGTGCGACAGCCCCGGCGTGGTGCACCCGCAAGTG
GGCGTGCCGCGCGCGCTGCAGGTCATCTTCGGCCTCTACCCCATCGCGCA
AGTGCGCGAGCCCTTCACGCACGTGCGCTTCATCGCGGAGCACTGCTGGC
CGCCGCTGCCCGCGGCGTTCGGGCTGCTGCACGTGGCGCGCCAGGTGCGC
GCGCGCGTGTGGTGCTGA
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protein sequence of jgi.p|Trimin1|172457

>Trimin1|172457|e_gw1.93.33.1 ID=Trimin1|172457|e_gw1.93.33.1|Name=jgi.p|Trimin1|172457|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
MGKSSLLNTLLGRRRVSTSATPGHTKHLQTMHVTKDLVLCDSPGVVHPQV
GVPRALQVIFGLYPIAQVREPFTHVRFIAEHCWPPLPAAFGLLHVARQVR
ARVWC*
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mRNA from alignment at Contig_93:265403..266493+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12043 ID=mRNA_12043|Name=jgi.p|Trimin1|172457|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1091bp|location=Sequence derived from alignment at Contig_93:265403..266493+ (Tribonema minus UTEX_B_3156 )
ATGGGGAAGTCATCGCTGCTCAACACGCTGCTGGGCAGGCGGCGTGTCAG
CACCAGCGCGACGCCCGGGCACACCAAGCACCTGCAGACGATGCACGTCA
CCAAGGTATGTATGTATATATATGTATATGTATGCTTTATTATGGTTATC
ACCTATGTAATGTAGGTATGGCGGTAACACAACTTGCCTGAGGGTCCTCC
GTGCGTACTTAGTTTGCTAAGTCAGCACCAGCGCGACGCCCAGGCACACC
AAGCACCTGCAGACGATGCACGTCACCAAGGTATGTTGTGATCTGTTATT
CTTTGTCACTCACCTATGTATGTAGGTATGGCGTTAAACGCACCTTGCGG
AAGGGTCGTCAATCATATGCAAACACAACAGCTTCGTGTGCTGCGACACC
AGCGCAGAACAGCTTGTGCACCCTCAACCGTTGCACAGTCTTTCGGGGGG
CGGAACGTGTGTTGCGTTTGCCAATTCGCGGCTCCCCCACTTTGCAGAAA
TCTGATGCTCTGAGACTGCCCCGGCGTTGTCGCTGTCGCATATACCATCA
CACCAGAAGAAGCGGCTTCTGTTTCGCAGGACGTCTGTCGTGTTAAATGG
CCGATCTGCAATAAAAGTGAATGCACAACGCCTGTCAAATGACGAGGCCT
GTGACAACTGGTCAGAACTGGCAGATGCCTCTATTTTTTAATTTTAAAAC
TTGTAGCAACAAGTCCATCCCCCCCCCCCCCCCTCCCCTCCTTAATTGCA
GGAACTGGTGCTGTGCGACTGCCCCGGCGTCGTGCACCCGCAAGTCGGCT
TGCCGCGCGCACTCTATACCTACCCATACGTGCTCTCTGCATACATACCC
CCCCCCCCCCCCCCCCCCCCTATCGCAGGACCTGGTGCTGTGCGACAGCC
CCGGCGTGGTGCACCCGCAAGTGGGCGTGCCGCGCGCGCTGCAGGTCATC
TTCGGCCTCTACCCCATCGCGCAAGTGCGCGAGCCCTTCACGCACGTGCG
CTTCATCGCGGAGCACTGCTGGCCGCCGCTGCCCGCGGCGTTCGGGCTGC
TGCACGTGGCGCGCCAGGTGCGCGCGCGCGTGTGGTGCTGA
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Coding sequence (CDS) from alignment at Contig_93:265403..266493+

>mRNA_12043 ID=mRNA_12043|Name=jgi.p|Trimin1|172457|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_93:265403..266493+ (Tribonema minus UTEX_B_3156 )
ATGGGGAAGTCATCGCTGCTCAACACGCTGCTGGGCAGGCGGCGTGTCAG
CACCAGCGCGACGCCCGGGCACACCAAGCACCTGCAGACGATGCACGTCA
CCAAGGACCTGGTGCTGTGCGACAGCCCCGGCGTGGTGCACCCGCAAGTG
GGCGTGCCGCGCGCGCTGCAGGTCATCTTCGGCCTCTACCCCATCGCGCA
AGTGCGCGAGCCCTTCACGCACGTGCGCTTCATCGCGGAGCACTGCTGGC
CGCCGCTGCCCGCGGCGTTCGGGCTGCTGCACGTGGCGCGCCAGGTGCGC
GCGCGCGTGTGGTGCTGA
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