mRNA_12032 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|172465
Unique Name	mRNA_12032
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|172465 vs. uniprot
Match: A0A836C8F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.160e-32
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 1

Query:    1 ASGEVYEGGWLRGRRWGVGACVYANXXXXXXXXXXXXXXXXXVLMSSDRGAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTLATGASLVEMAHAVRXXXXXXXXXXXXXXXXXXXATYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVRIAAPVRDGDGGSXXXXXXXXXXXXDWLIPINLVDIERIHVKAGFDKGGL 861
            ASGEVYEGGWLRGRRWGVGACVYANXXXXXXXXXXXXXXXXXVLMSSDRGAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTLATGASLVEMAHAVRXXXXXXXXXXXXXXXXXXXATYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVRIAAPVRDGDGGSXXXXXXXXXXXXDWLIPINLVDIERIHVKAGFDKGGL
Sbjct:    1 ASGEVYEGGWLRGRRWGVGACVYANXXXXXXXXXXXXXXXXXVLMSSDRGAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTLATGASLVEMAHAVRXXXXXXXXXXXXXXXXXXXATYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVRIAAPVRDGDGGSXXXXXXXXXXXXDWLIPINLVDIERIHVKAGFDKGGL 287

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|172465 vs. uniprot

BLAST of jgi.p|Trimin1|172465 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836C8F5_9STRA	1.160e-32	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_93	contig	Contig_93:190991..195045 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|172465\|e_gw1.93.30.1
Hectar predicted targeting category	other localisation
TranscriptId	172787
Track	FilteredModels1
ProteinId	172465

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|172465	gene_12032	Tribonema minus UTEX_B_3156	gene	Contig_93 190991..195045 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12032_1	exon_12032_1	Tribonema minus UTEX_B_3156	exon	Contig_93 190991..191286 +
exon_12032_2	exon_12032_2	Tribonema minus UTEX_B_3156	exon	Contig_93 191514..191603 +
exon_12032_3	exon_12032_3	Tribonema minus UTEX_B_3156	exon	Contig_93 192474..192680 +
exon_12032_4	exon_12032_4	Tribonema minus UTEX_B_3156	exon	Contig_93 194775..195045 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12032	CDS_12032	Tribonema minus UTEX_B_3156	CDS	Contig_93 190991..191286 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|172465	Trimin1\|172465\|e_gw1.93.30.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_93 190991..195045 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_93:190991..195045+
coding sequence from alignment at Contig_93:190991..195045+

spliced messenger RNA

>mRNA_12032 ID=mRNA_12032|Name=jgi.p|Trimin1|172465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=864bp|location=Sequence derived from alignment at Contig_93:190991..195045+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGAGCGGCGAGGTGTACGAGGGGGGGTGGCTGCGGGGGCGGCGCTGGGG
CGTCGGCGCGTGCGTGTACGCAAATGGGAATTTATATCAGGGGGAGTGGC
GGCGCGGGCGCGAGCACGGCGCGGGGGTTCTCATGAGCAGTGACCGCGGC
GCCGTGCTGTACGACGGGGACTGGGCGGACGGGCGCCTGTGCGGGAGGGG
GACGTACCGCTTCCCGGACGGCTCGACGTACGTGGGGGACTGGCGCGACA
GCCTGCGGCACGGGCGCGGCGTCTACACGCTCGCCACCGGCGCCAGCCTG
GTTGAGATGGCGCATGCGGTGCGTGGCGACTGGCGCGACAGCCTGCGGCA
CGGGCGCGGCGTGTACACGCTCGCCACCGGCGCGACGTACGAGGGCGAGT
GGCGCGAGAATGTGCGCTGCGGGCGCGGCGTCATGGAGTGGCCGGACGGC
TCGGTGTACGACGGCGACTGGGCCGACGACGCGCGCCACGGCCGCGGCGT
GCTGCGCCTCTCCACGGGCTTTGCGTACGACGGGCAGTGGTGCGCGGACG
AGATGGAGGGGCGCGGCATGTGCGTCTACGAGGACGGGCAGAGGTACGAG
GGCATGTTCCGCGGCGGCCTCAAGGACGGCCGCGGCACGCTCGTCTTTGC
CAACGGCGTCTCGTACGAGGGCCGCTTCCGCAACGACCGCATAGACGGCC
AGGGCATGGTGCGCATCGCGGCGCCGGTGCGCGACGGCGACGGCGGCAGC
AGCAGCGGCGGCGGCGACAGCGGCGGCGGCGGCGGCGACTGGCTCATCCC
CATCAATCTTGTGGACATTGAGCGCATACACGTCAAGGCGGGGTTCGACA
AGGGAGGCCTTTGA

protein sequence of jgi.p|Trimin1|172465

>Trimin1|172465|e_gw1.93.30.1 ID=Trimin1|172465|e_gw1.93.30.1|Name=jgi.p|Trimin1|172465|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp
ASGEVYEGGWLRGRRWGVGACVYANGNLYQGEWRRGREHGAGVLMSSDRG
AVLYDGDWADGRLCGRGTYRFPDGSTYVGDWRDSLRHGRGVYTLATGASL
VEMAHAVRGDWRDSLRHGRGVYTLATGATYEGEWRENVRCGRGVMEWPDG
SVYDGDWADDARHGRGVLRLSTGFAYDGQWCADEMEGRGMCVYEDGQRYE
GMFRGGLKDGRGTLVFANGVSYEGRFRNDRIDGQGMVRIAAPVRDGDGGS
SSGGGDSGGGGGDWLIPINLVDIERIHVKAGFDKGGL*

mRNA from alignment at Contig_93:190991..195045+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12032 ID=mRNA_12032|Name=jgi.p|Trimin1|172465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4055bp|location=Sequence derived from alignment at Contig_93:190991..195045+ (Tribonema minus UTEX_B_3156 )
GCGAGCGGCGAGGTGTACGAGGGGGGGTGGCTGCGGGGGCGGCGCTGGGG
CGTCGGCGCGTGCGTGTACGCAAATGGGAATTTATATCAGGGGGAGTGGC
GGCGCGGGCGCGAGCACGGCGCGGGGGTTCTCATGAGCAGTGACCGCGGC
GCCGTGCTGTACGACGGGGACTGGGCGGACGGGCGCCTGTGCGGGAGGGG
GACGTACCGCTTCCCGGACGGCTCGACGTACGTGGGGGACTGGCGCGACA
GCCTGCGGCACGGGCGCGGCGTCTACACGCTCGCCACCGGCGCCAGGTGA
GCGCGTGTGTAACTCCAACTGTGAAGTTGAGGTCGGAGGTGTGGAAGCTG
TGCGATTGAGAGGACGCACATTCGAGCGCAGGAGCGGCGCCTGCATGCTC
GCCACTGGCGTCAGGTTAGCGCGCAACCTCAACTTGATGTTTGGTGTGTG
TTCAGGTGGCTGTGTAGCGCAGTCGCGGTGCGCGGCCCGGCGGCAGGTGC
CTGACTGCGATGTGCTTTTCGAGCCTGGTTGAGATGGCGCATGCGGTGCG
TGGCGACTGGCGCGACAGCCTGCGGCACGGGCGCGGCGTGTACACGCTCG
CCACCGGCGCGACGTGAGCGTAGTCAAGTTCAATCAAGGAAACCAACAGT
ACACTGCCCGGGCATATGCGCTACCGCAGAAGAATCGCCGCAGGTACGGG
GACGAGCGCCGCGCGGACGACCAGAACCAGAACTTGCATATGAGAACATC
ACAACCCCCCTGTGTAAGCGCTTGCGGTCTTGAAGTGTGCCCCCCTGCAC
GACGACGCTGCAGGTACGAGGGCGAGTGGCGCGAGAACGTGCGCTGCGGG
CGCGGCGTCATGGAGTGGCCGGACGGCTCCGTAGCATACTACTTCAAGTT
GACCAAGGACGCATACTTCAAGTATGAAAGCTAATACGTACTGTCCCTGT
TCTTCATGACGCCGCAGGTACGAGGGCGAGTGGCGCGAGAACGTGCGCTG
CGGGCGCGGCATCACGCAGTAGCCCGATGAGTCGGCGCACTTCTTTTCAA
AAGTACGGCAAACCTATGTTGTATGACCTCTTCGGGAGAAGAGAAGCGCA
ACCTCTGTTGGAAAAAGACAACCGCAACCTCTTGTAATCATTTCGCACCT
CCGCGGCAGGTACGAGGGCGAGTGGCGCGAGAATGTGCGCTGCGGGCGCG
GCGTCATGGAGTGGCCTGACGGCTCCTTGGCCGTACTACTTTAAGCTGAC
AAAGACGCATACTCAGAGTTCAAGTTGCTGACCAAATACTGCCCCTGCCC
GCGCCACCGCGCAACAACAATCGCCGCAGGTACGAGGGCGAGTGGCGCGA
GAACGTGCGCTGCGGGCATGGCGTCATGGAGTGGCCCGACGGCTCGGCGC
ACTTCTTGAAGTTCTGACGGCCAATACCGAACCAGAACCACAACCCCTGT
CTCAGCGCCTACGTCGCCGCGAATTTGCTGCAGGTACGAGGGCGAGTGGC
GCGAGAATGTGCGCTGCGGGCGCGGCGTCATGGAGTGGCCGGACGGCTCG
GTGTACGACGGCGACTGGGCCGACGACGCGCGCCACGGCCGCGGCGTGCT
GCGCCTCTCCACGGGCTTTGCGTACGACGGGCAGTGGTGCGCGGACGAGA
TGGAGGGGCGCGGCATGTGCGTCTACGAGGACGGGCAGAGGTGAGCTGAT
CGCTGCTGCTGTGAGCGGAGCACTGTTGCCTACGGGGGGCGGGGGGGGGG
AGGGGGGGGGGCAGAGGTGAGCGCTGCTTCATGAGTGCTGTCGTCCGATT
GAGGGCCATGCGCGGCATGTGCATCTACGAGGACGGCCAGAGGTGAGCGC
TGCCGCAGCAATTCGTCGAGCAGGACTTGGCTCAAGAGATCCAAAGAGCG
CTGCTGCGGTAGACGAGATTCAATCGGAGGGTCACGCGCGGCATGCGCGT
CTACGAGGACGAGCGCTGCTGCTGGAGCCTGCTGCGCGGTGGCTTGGCCC
CTGCTTGTGTGTGCCTGCAGTGGGTGGGCGGGGGGGCAGAGTTGGGCGCT
GCTGCCATGAGTCGTGTCGATTGAGGGCCGCGTGCGGCGTGCGCGTCTAC
GAGGACGGGCAGCGGTGAGCGATGCCGCCGTCAACTGAGGGCTGCGGCTG
TGGACAGGAAAATGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGACAGAGG
TGAGCGCTGCTGTGTGAGAACTGTAGCCTGATGGAGGCCCGCGCATGGCA
CGTGCGTCTACGAGGACGGGCTGAGGGCTGTCGGTTGAGCGCTGCTGCCT
AAGCGTTCTCGATGTCTGCTGCCTGGTGTGTGCGGGGCGCGGGCGGGTGC
TGAGTCTGGCCTCACGCGGCATGTGCGCATACGAGGACGGGCAGAGGTGA
GCGCTGCCGCAGTCGGCGGAGCGCTGCTGTGGTAGACAAGATGGGGGGGG
CGGAGGGGCAAGAGGTTGGCCCTGCTGCATGAGCGGTGCCATCCGATTGA
GGGCATGCGCATCTACAAGGACAGGCAGAGGTGAGCGCTGCTGCTATCTG
CTGCACGGTGGCTTGAGCACTGCTGCTGTAAGCTGAGCACTGTTGCCTGC
AGGGGGTGGGGGAGAGGTGAGCGCTGCTGCATGAGCGGTGCCGTCCGATT
GAGGTCCACGCACGGCGTGCTCGTCTTCGTGGACGGGCAGAGCTGAGCGC
TGCTGCCCGTGTTGCCTCAGGTTGAGATTCCTCAGCCCTCAGTGCACTGG
ACGTTATCCCAAAACTACCTTTTATTGTAGCCCTGACCCCACTCGACCTC
CGCAAGAAGGAGGGCATGTTTCTGCGGTGGCCTCTTGGCCGGCCGCGGCT
CCCCTGCCTTCACCCTAACCATTATTCCAAAGTCAGCCCTCATTCAAACC
TACTTCAACTCTCTGCAGGTACACGAGGTCATGCTCCGCGGCAGCCTAAG
GGACGGCCGCGGCACGCTCTCCGTCACCCCAACCCTGATTGAGTTCCAAC
TTTGATTCTGCTTTGAACTCTACTTCAAATTTCTGATTCAACTTCGACTC
ATCAGGTATGAGGGCATGTTCCGCGGCGGCCTCGAGGACGGCTGCGGCAC
GCTCGCCTTCACTCCAACCCTGATTGAATTTAACCTCAATCTTCGTCAAA
CCCTACTTCAACAATCTTCTTCAAACCCTACTTCAACTAATCAGGTACAA
GGGCAAGTTCCGCGGCGGCTTCGAGGATGGCCGCGGCACGCTCGCCCTCG
CTCCAATCCTCATTGCATTGCAACCTGCTGAAAGCCCAACTTCAACTTCT
AACAAAAATCTTACTTCAAATCTCTGCAGGTACGAGGGGCATGTTCCGCG
GCGGCCTCATGGATGGCCGCGACATGCTCGCCTTCACTCCAACCCTGATT
GAATTTTAAATTCAATTTTGTTTCAGCTTTCGGATTCAGATTCTGCATCA
AGCCCTACTTTAACTTTATGATTCAAACTCTACTTCAATTTAATGCAGGT
ATGCAGGTACGAGGGGGCATGTTCCGCCGCGGCCTCAAGGACGGCTGCGA
CTCGCTCGCCTTCACTCCATCCCTGATTGAATGCCAACCTCAATTCTATT
TCAAGCCCCGCTTCAACTTTCTGTTTCAAATCCTACTTCAGCTCGTCAGG
TACGAGGGCATGTTCCGCAGCGGCCTCAAGGACGGCCGCGGCGCGCTCGC
CCTCGCTCCAATCCTCATTGCATTGCAACCTGCTGAAAGCCCATCTTCAA
CTTCTAACTAAAATCTTACTTCTACTCTCTGCAGGTACGAGGGCATGTTC
CGCGGCGGCCTCAAGGACGGCCGCGGCACGCTCGTCTTTGCCAACGGCGT
CTCGTACGAGGGCCGCTTCCGCAACGACCGCATAGACGGCCAGGGCATGG
TGCGCATCGCGGCGCCGGTGCGCGACGGCGACGGCGGCAGCAGCAGCGGC
GGCGGCGACAGCGGCGGCGGCGGCGGCGACTGGCTCATCCCCATCAATCT
TGTGGACATTGAGCGCATACACGTCAAGGCGGGGTTCGACAAGGGAGGCC
TTTGA

Coding sequence (CDS) from alignment at Contig_93:190991..195045+

>mRNA_12032 ID=mRNA_12032|Name=jgi.p|Trimin1|172465|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_93:190991..195045+ (Tribonema minus UTEX_B_3156 )
GCGAGCGGCGAGGTGTACGAGGGGGGGTGGCTGCGGGGGCGGCGCTGGGG
CGTCGGCGCGTGCGTGTACGCAAATGGGAATTTATATCAGGGGGAGTGGC
GGCGCGGGCGCGAGCACGGCGCGGGGGTTCTCATGAGCAGTGACCGCGGC
GCCGTGCTGTACGACGGGGACTGGGCGGACGGGCGCCTGTGCGGGAGGGG
GACGTACCGCTTCCCGGACGGCTCGACGTACGTGGGGGACTGGCGCGACA
GCCTGCGGCACGGGCGCGGCGTCTACACGCTCGCCACCGGCGCCAGCCTG
GTTGAGATGGCGCATGCGGTGCGTGGCGACTGGCGCGACAGCCTGCGGCA
CGGGCGCGGCGTGTACACGCTCGCCACCGGCGCGACGTACGAGGGCGAGT
GGCGCGAGAATGTGCGCTGCGGGCGCGGCGTCATGGAGTGGCCGGACGGC
TCGGTGTACGACGGCGACTGGGCCGACGACGCGCGCCACGGCCGCGGCGT
GCTGCGCCTCTCCACGGGCTTTGCGTACGACGGGCAGTGGTGCGCGGACG
AGATGGAGGGGCGCGGCATGTGCGTCTACGAGGACGGGCAGAGGTACGAG
GGCATGTTCCGCGGCGGCCTCAAGGACGGCCGCGGCACGCTCGTCTTTGC
CAACGGCGTCTCGTACGAGGGCCGCTTCCGCAACGACCGCATAGACGGCC
AGGGCATGGTGCGCATCGCGGCGCCGGTGCGCGACGGCGACGGCGGCAGC
AGCAGCGGCGGCGGCGACAGCGGCGGCGGCGGCGGCGACTGGCTCATCCC
CATCAATCTTGTGGACATTGAGCGCATACACGTCAAGGCGGGGTTCGACA
AGGGAGGCCTTTGA