mRNA_11968 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171617
Unique NamemRNA_11968
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|171617 vs. uniprot
Match: A0A836C7R0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R0_9STRA)

HSP 1 Score: 265 bits (677), Expect = 7.500e-90
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 MTNSPASIGLLFFSLLAASVGFGTMTMAAIHDGQWNETARYASLSANLITFAIVSAQCLLLLEQHMCTPLMPFIEVNNFLFSLRTHTSPGDICNKNLHASCDNLKGVSMCIVDNSCLGGIAEVSPYLRHT 390
            MTNSPASIGLLFFSLLAASVGFGTMTMAAIHDGQWNETARYASLSANLITFAIVSAQCLLLLEQHMCTPLMPFIEVNNFLFSLRTHTSPGDICNKNLHASCDNLKGVSMCIVDNSCLGGIAEVSPYLRHT
Sbjct:    1 MTNSPASIGLLFFSLLAASVGFGTMTMAAIHDGQWNETARYASLSANLITFAIVSAQCLLLLEQHMCTPLMPFIEVNNFLFSLRTHTSPGDICNKNLHASCDNLKGVSMCIVDNSCLGGIAEVSPYLRHT 130
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171617 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7R0_9STRA7.500e-90100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_83contigContig_83:324009..324401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171617|e_gw1.83.103.1
Hectar predicted targeting categorysignal peptide
TranscriptId171939
TrackFilteredModels1
ProteinId171617
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171617gene_11968Tribonema minus UTEX_B_3156 geneContig_83 324009..324401 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11968_1exon_11968_1Tribonema minus UTEX_B_3156 exonContig_83 324009..324401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11968CDS_11968Tribonema minus UTEX_B_3156 CDSContig_83 324009..324401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171617Trimin1|171617|e_gw1.83.103.1Tribonema minus UTEX_B_3156 polypeptideContig_83 324009..324401 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11968 ID=mRNA_11968|Name=jgi.p|Trimin1|171617|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_83:324009..324401+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACTCGCCAGCAAGCATCGGCCTGCTTTTCTTCTCGCTGCTAGC
AGCGAGCGTTGGCTTTGGCACCATGACGATGGCCGCCATCCACGATGGAC
AGTGGAACGAGACAGCGCGCTATGCGTCTCTCTCGGCCAACCTCATCACC
TTTGCCATTGTAAGTGCTCAGTGCTTGCTGCTGCTGGAACAACATATGTG
CACTCCACTAATGCCTTTCATTGAAGTGAATAATTTTTTATTCTCGCTTA
GGACACATACAAGTCCAGGTGACATTTGCAACAAGAATCTACATGCGTCT
TGTGACAATTTGAAAGGGGTCTCAATGTGCATTGTTGATAACTCCTGCTT
AGGCGGCATCGCCGAAGTGTCGCCATATCTTCGCCACACTTGA
back to top

protein sequence of jgi.p|Trimin1|171617

>Trimin1|171617|e_gw1.83.103.1 ID=Trimin1|171617|e_gw1.83.103.1|Name=jgi.p|Trimin1|171617|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
MTNSPASIGLLFFSLLAASVGFGTMTMAAIHDGQWNETARYASLSANLIT
FAIVSAQCLLLLEQHMCTPLMPFIEVNNFLFSLRTHTSPGDICNKNLHAS
CDNLKGVSMCIVDNSCLGGIAEVSPYLRHT*
back to top

mRNA from alignment at Contig_83:324009..324401+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11968 ID=mRNA_11968|Name=jgi.p|Trimin1|171617|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_83:324009..324401+ (Tribonema minus UTEX_B_3156 )
ATGACGAACTCGCCAGCAAGCATCGGCCTGCTTTTCTTCTCGCTGCTAGC
AGCGAGCGTTGGCTTTGGCACCATGACGATGGCCGCCATCCACGATGGAC
AGTGGAACGAGACAGCGCGCTATGCGTCTCTCTCGGCCAACCTCATCACC
TTTGCCATTGTAAGTGCTCAGTGCTTGCTGCTGCTGGAACAACATATGTG
CACTCCACTAATGCCTTTCATTGAAGTGAATAATTTTTTATTCTCGCTTA
GGACACATACAAGTCCAGGTGACATTTGCAACAAGAATCTACATGCGTCT
TGTGACAATTTGAAAGGGGTCTCAATGTGCATTGTTGATAACTCCTGCTT
AGGCGGCATCGCCGAAGTGTCGCCATATCTTCGCCACACTTGA
back to top

Coding sequence (CDS) from alignment at Contig_83:324009..324401+

>mRNA_11968 ID=mRNA_11968|Name=jgi.p|Trimin1|171617|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_83:324009..324401+ (Tribonema minus UTEX_B_3156 )
ATGACGAACTCGCCAGCAAGCATCGGCCTGCTTTTCTTCTCGCTGCTAGC
AGCGAGCGTTGGCTTTGGCACCATGACGATGGCCGCCATCCACGATGGAC
AGTGGAACGAGACAGCGCGCTATGCGTCTCTCTCGGCCAACCTCATCACC
TTTGCCATTGTAAGTGCTCAGTGCTTGCTGCTGCTGGAACAACATATGTG
CACTCCACTAATGCCTTTCATTGAAGTGAATAATTTTTTATTCTCGCTTA
GGACACATACAAGTCCAGGTGACATTTGCAACAAGAATCTACATGCGTCT
TGTGACAATTTGAAAGGGGTCTCAATGTGCATTGTTGATAACTCCTGCTT
AGGCGGCATCGCCGAAGTGTCGCCATATCTTCGCCACACTTGA
back to top