mRNA_11925 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174185
Unique NamemRNA_11925
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174185 vs. uniprot
Match: A0A835ZJ82_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ82_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.530e-49
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 
Query:    1 MADGVNGGDGHVRSAFFVFGVAALRSGKHTTAAAAFVKHLQAHAGDVKALLNLGQSYAALSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSMALHNLNTALRMMGQLDQALELSWSHVQGA 435
            MADGVNGGDGHVRSAFFVFGVAALRSGKHTTAAAAFVKHLQAHAGDVKALLNLGQSYAALSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSMALHNLNTALRMMGQLDQALELSWSHVQGA
Sbjct:    1 MADGVNGGDGHVRSAFFVFGVAALRSGKHTTAAAAFVKHLQAHAGDVKALLNLGQSYAALSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSMALHNLNTALRMMGQLDQALELSWSHVQGA 145
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJ82_9STRA2.530e-49100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:489432..489866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174185|e_gw1.111.81.1
Hectar predicted targeting categoryother localisation
TranscriptId174507
TrackFilteredModels1
ProteinId174185
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174185gene_11925Tribonema minus UTEX_B_3156 geneContig_111 489432..489866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11925_1exon_11925_1Tribonema minus UTEX_B_3156 exonContig_111 489432..489866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11925CDS_11925Tribonema minus UTEX_B_3156 CDSContig_111 489432..489866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174185Trimin1|174185|e_gw1.111.81.1Tribonema minus UTEX_B_3156 polypeptideContig_111 489432..489866 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11925 ID=mRNA_11925|Name=jgi.p|Trimin1|174185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_111:489432..489866- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATGGCGTCAACGGAGGGGATGGCCATGTGCGCAGCGCCTTCTT
CGTGTTCGGTGTAGCCGCCTTACGAAGCGGAAAGCACACTACTGCAGCAG
CAGCCTTCGTCAAGCACCTGCAGGCCCATGCTGGGGATGTCAAGGCGCTT
CTCAACTTGGGCCAAAGCTACGCCGCACTGAGCCGCCACACTCTGGCCGC
CGATGCCTTCGAGCAAGCTCTAGCTCTGCAGCCTCGCAACACAGATGCGG
CCGCCAACGCCGCAGCGTGTTGCATCATCCTCGACAATGCCACAAGGGCT
GCTGAGGTGTGCAGACAGGCTTTGGCCGTGGATCCTGAATGCTCCATGGC
GCTTCATAATCTGAACACAGCGCTGCGTATGATGGGGCAGCTGGACCAGG
CGTTGGAGCTGTCTTGGAGCCACGTACAGGGAGCC
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protein sequence of jgi.p|Trimin1|174185

>Trimin1|174185|e_gw1.111.81.1 ID=Trimin1|174185|e_gw1.111.81.1|Name=jgi.p|Trimin1|174185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
MADGVNGGDGHVRSAFFVFGVAALRSGKHTTAAAAFVKHLQAHAGDVKAL
LNLGQSYAALSRHTLAADAFEQALALQPRNTDAAANAAACCIILDNATRA
AEVCRQALAVDPECSMALHNLNTALRMMGQLDQALELSWSHVQGA
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mRNA from alignment at Contig_111:489432..489866-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11925 ID=mRNA_11925|Name=jgi.p|Trimin1|174185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_111:489432..489866- (Tribonema minus UTEX_B_3156 )
ATGGCTGATGGCGTCAACGGAGGGGATGGCCATGTGCGCAGCGCCTTCTT
CGTGTTCGGTGTAGCCGCCTTACGAAGCGGAAAGCACACTACTGCAGCAG
CAGCCTTCGTCAAGCACCTGCAGGCCCATGCTGGGGATGTCAAGGCGCTT
CTCAACTTGGGCCAAAGCTACGCCGCACTGAGCCGCCACACTCTGGCCGC
CGATGCCTTCGAGCAAGCTCTAGCTCTGCAGCCTCGCAACACAGATGCGG
CCGCCAACGCCGCAGCGTGTTGCATCATCCTCGACAATGCCACAAGGGCT
GCTGAGGTGTGCAGACAGGCTTTGGCCGTGGATCCTGAATGCTCCATGGC
GCTTCATAATCTGAACACAGCGCTGCGTATGATGGGGCAGCTGGACCAGG
CGTTGGAGCTGTCTTGGAGCCACGTACAGGGAGCC
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Coding sequence (CDS) from alignment at Contig_111:489432..489866-

>mRNA_11925 ID=mRNA_11925|Name=jgi.p|Trimin1|174185|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_111:489432..489866- (Tribonema minus UTEX_B_3156 )
ATGGCTGATGGCGTCAACGGAGGGGATGGCCATGTGCGCAGCGCCTTCTT
CGTGTTCGGTGTAGCCGCCTTACGAAGCGGAAAGCACACTACTGCAGCAG
CAGCCTTCGTCAAGCACCTGCAGGCCCATGCTGGGGATGTCAAGGCGCTT
CTCAACTTGGGCCAAAGCTACGCCGCACTGAGCCGCCACACTCTGGCCGC
CGATGCCTTCGAGCAAGCTCTAGCTCTGCAGCCTCGCAACACAGATGCGG
CCGCCAACGCCGCAGCGTGTTGCATCATCCTCGACAATGCCACAAGGGCT
GCTGAGGTGTGCAGACAGGCTTTGGCCGTGGATCCTGAATGCTCCATGGC
GCTTCATAATCTGAACACAGCGCTGCGTATGATGGGGCAGCTGGACCAGG
CGTTGGAGCTGTCTTGGAGCCACGTACAGGGAGCC
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