mRNA_11905 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174169
Unique NamemRNA_11905
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A835ZGC8_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC8_9STRA)

HSP 1 Score: 549 bits (1414), Expect = 4.380e-197
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1 
Query:    1 MAKSISNLRGGARELATAAPSAXXXXXXAMMGGPITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGINMMM 855
            MAKSISNLRGGARELATAAPSAXXXXXXAMMGGPITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGINMMM
Sbjct:    1 MAKSISNLRGGARELATAAPSAXXXXXXAMMGGPITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGINMMM 285
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A836CMD7_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD7_9STRA)

HSP 1 Score: 324 bits (831), Expect = 9.520e-109
Identity = 170/252 (67.46%), Postives = 188/252 (74.60%), Query Frame = 1 
Query:  100 PITDTDIL--NFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGINM 849
            P TDTDI    FALNLECLEAEFYSYAAFG  L+DE RG GP  IGG +A LS   QTYAEEIAN+EI HV +LR  LGDAA  CP +DIGPAFAAAANAAVG  L+PAY+PYF+D WF  GAFIFEDVGVTAYNGAA L+ NK  L AAA +L VEAYH G +RTLLYQ +D  LTPY  TV  A TA+S LR  VGG KDV +   G   ++P DEN+L +AR   EVLAIVYLG A  PGGFFPDGINM
Sbjct:    7 PPTDTDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGINM 258
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A836CND4_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND4_9STRA)

HSP 1 Score: 314 bits (804), Expect = 8.240e-105
Identity = 161/247 (65.18%), Postives = 183/247 (74.09%), Query Frame = 1 
Query:  106 TDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            TD  I  FALNLECLEAEFYSYAAFG  L+DE RG GP  IGG +A LS D Q YAEE+A +EI HV +LR  LGDAA  CP +DIGPAFAAAANAAVG  L+P Y+PY+ND WF LG+FIFEDVGVTAYNGAAPL+ NK  +  AA +L VEAYH G +RTLLYQ +D  LTPY VTV  A TA+S LR  VGG KD  +   G   L P D+N+L +AR  +EVLAIVYLG + KPGGFFP GIN
Sbjct:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 247
[Close]
BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A836CQA2_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQA2_9STRA)

HSP 1 Score: 301 bits (772), Expect = 6.610e-100
Identity = 158/250 (63.20%), Postives = 183/250 (73.20%), Query Frame = 1 
Query:  109 DTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSD--DFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIY--DGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            D  I+ FALNLECLEA+FYSYAAFG  L+DEQRG GP  IGG++A L+     Q YAEEIAN+EI HV  LR VLGD A PCPL+DIGPAFAAAANAA G +L P ++PY +D  F +GAF+FEDVGVTAYNG APLI+NKD L AA G+L +EAYH G VRTLLYQ  D  L PY  TVA A  ++S LR  +GG KD  +   DGG   + P D N+L FART  EVLAIVYLG A  PGGFFPDG++
Sbjct:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 250
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A835YUW9_9STRA (Ferritin-like domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW9_9STRA)

HSP 1 Score: 283 bits (725), Expect = 6.720e-92
Identity = 149/239 (62.34%), Postives = 168/239 (70.29%), Query Frame = 1 
Query:  133 LNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGINM 849
            L LECLEAEFYSYAA+G  LTD+ RG GP  IGG +A LS + Q YAEEIA +EI HV +LR  LG+ A  CP +DIGPAFAA ANAA      P YTPY ND  F LGAF+FEDVGVTAYNGAAPL+ NK  L+ AA +L VEAYH G +RTLLYQ +D  LTP+  TV  A    S LR  VGG KD  +   G   ++PVDENSL FART  EVL IVYLG A  PGGFFP+GINM
Sbjct:   72 LQLECLEAEFYSYAAYGYGLTDDLRGYGPEPIGGMKATLSPEVQAYAEEIAKNEIAHVGVLRAALGNLAPACPQIDIGPAFAAVANAAAATVFDPPYTPYDNDTSFLLGAFLFEDVGVTAYNGAAPLLTNKGILSTAASILAVEAYHGGSLRTLLYQQEDVVLTPHTFTVGEAVALASALRASVGGGKDKALETDGVLSIMPVDENSLAFARTATEVLNIVYLGSASTPGGFFPNGINM 310
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A7L9QEA2_9CHLO (Putative extracellular protein CSOL_059a n=1 Tax=Pseudococcomyxa simplex TaxID=464287 RepID=A0A7L9QEA2_9CHLO)

HSP 1 Score: 264 bits (675), Expect = 1.140e-84
Identity = 150/264 (56.82%), Postives = 175/264 (66.29%), Query Frame = 1 
Query:  103 ITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAP-AYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKD-YLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGG--------------ETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            ITD +ILNFALNLECLEAEFYSYAAFG  L     GGGP + GG++A LS   Q YA EIA  EI HV  LR  LG AA+PCP +DIG AF+A  NAA+G K     ++PY ND  F LGAF+FEDVGVTAY+GAAP I +K   LAAAAG+L VEAYHAGI+RTLL+Q    P+ PY +       A+SNLR  VGG KD  I D                 ++LVP +++SL FART+ EVLAIVY G A  PG FFP GIN
Sbjct:   21 ITDVNILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGATGGEKAQLSYSVQQYATEIAQDEINHVAFLRSALGAAAIPCPQIDIGAAFSAVINAALGTKATSYKFSPYDNDLDFLLGAFLFEDVGVTAYSGAAPFISDKTTVLAAAAGILSVEAYHAGIIRTLLFQDGAYPVKPYKIQTVDFVQALSNLRAAVGGGKDKGITDPPANGSLYIPYLTSKYSSNLVPTNDDSLAFARTIPEVLAIVYGGSASTPGAFFPQGIN 284
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: I0YQP4_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQP4_COCSC)

HSP 1 Score: 263 bits (672), Expect = 3.250e-84
Identity = 150/263 (57.03%), Postives = 172/263 (65.40%), Query Frame = 1 
Query:  103 ITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAP-AYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDV----PIYDGG----------ETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            ITD  ILNFALNLECLEAEFYSYAAFG  L     GGGP S GG++A LS   Q YA EIA  E+ HV  LR  LGD AVPCP +DIG AF+A  +AA+G K     ++PY ND  F LG+F+FEDVGVTAY GAAP I +K  L AA G+L VEAYHAGI+RTLLYQ    P+ PY +       A+SNLR  VGG KD     P  DG           E++LVP +  SL FART+ EVLAIVY G A  PG FFP+GIN
Sbjct:   22 ITDIQILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGSTGGQKAKLSYAVQQYALEIAEDELNHVAFLRSALGDKAVPCPQIDIGTAFSAIIDAALGSKATSYKFSPYDNDLDFLLGSFLFEDVGVTAYLGAAPAITDKTVLGAAGGILAVEAYHAGIIRTLLYQDGAYPVVPYKIQTVDFVQALSNLRAAVGGGKDQGITSPAADGSLYVPYLTSKYESNLVPTNAASLAFARTIPEVLAIVYGGSASTPGAFFPEGIN 284
[Close]
BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A8J9RR61_9CHLO (Desiccation-related protein PCC13-62 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR61_9CHLO)

HSP 1 Score: 264 bits (674), Expect = 6.970e-84
Identity = 146/258 (56.59%), Postives = 174/258 (67.44%), Query Frame = 1 
Query:  103 ITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGM-KLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDV----PIYDGGE-----THLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            +TD DILNFALNLECLEA+FYSYAA+G+ L    RGGGP + GGK+AVLS   Q YA EIA  E+ HV  LR  LG AAVPCP +D+GPAFAA   AA+G   +   ++PY ND  F L AFI EDVGVTAYNGAAPLI+ K  + AAA +L  EAYH GI+RTLLYQ     + PY +        +SNLRG VGG KD     P+ +G +     ++LVP D NSLVFART  EVL IVY G A KP  F+P+G+N
Sbjct:   66 VTDADILNFALNLECLEADFYSYAAYGSGLNSTLRGGGPMATGGKKAVLSSPVQNYANEIALDEVNHVAFLRMALGTAAVPCPQIDVGPAFAAIVKAALGSANMDTMFSPYDNDLDFLLAAFILEDVGVTAYNGAAPLIQAKKNVGAAASILATEAYHGGIIRTLLYQRGYDTVMPYSLQTVDFAQKLSNLRGTVGGGKDEGITSPMANGVKNTPYSSNLVPTDSNSLVFARTPTEVLNIVYGGSAAKPSAFYPNGVN 323
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: UPI00166CE419 (ferritin-like domain-containing protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI00166CE419)

HSP 1 Score: 248 bits (634), Expect = 1.930e-78
Identity = 142/252 (56.35%), Postives = 171/252 (67.86%), Query Frame = 1 
Query:  100 PITDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGV---LGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            P  D D+LNFALNLE LEAEFY +AAFGA L++   GGGPA+ GGK+A LS   Q  AEEIA  E  HV+ LR     LG   V  P +DIGPAFAAAA+AA G K+   ++PY ND +FA GAFIFEDVGVTAY+GAA LI + D L AAAG+L VEAYHAG +R+ LY  KDT + P  +TV     A+S LRG VGG KD  I  GG+ ++V  D N++ + RT  EVL IVYL      GGFFP+G+N
Sbjct:   36 PNLDIDVLNFALNLEYLEAEFYLWAAFGAGLSNADAGGGPAATGGKKATLSAALQQRAEEIARDEEAHVKALRATITKLGGTPVARPQLDIGPAFAAAADAASGGKI-KGFSPYTNDLFFAHGAFIFEDVGVTAYSGAATLITSPDVLQAAAGILAVEAYHAGEIRSYLYDQKDTVVVP-GLTVEDVVAAISALRGSVGGGKDEGITKGGKANIVAADANAIAYHRTTREVLNIVYLAAGATKGGFFPNGLN 285
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BLAST of jgi.p|Trimin1|174169 vs. uniprot
Match: A0A511MYZ7_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511MYZ7_9DEIO)

HSP 1 Score: 243 bits (620), Expect = 2.440e-76
Identity = 141/260 (54.23%), Postives = 173/260 (66.54%), Query Frame = 1 
Query:   85 AMMGGPIT---DTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGV---LGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 846
            A++ GP     D D+LNFALNLE LEAEFY +AAFG  L+    GGGP + GGK+A LS   Q  AEEIA  E  HV  LR     LG   VP P +DIGPAFAAAA+AA G K+   ++PY ND +F  GAF+FEDVGVTAYNGAA L+ +   L AAAG+L VEAYHAG +R  LY+ + TP+    +TV     A+S LRG VGG KD  I  GG+ ++V  D N++ +ART  EVL IVYLG + K GGFFP+G+N
Sbjct:   28 AVVAGPNKQNIDLDVLNFALNLEYLEAEFYLWAAFGTGLSAADAGGGPVATGGKKATLSAGIQQIAEEIARDEEAHVRALRATITKLGGTPVPRPQIDIGPAFAAAADAASGGKI-KGFSPYANDLFFMHGAFVFEDVGVTAYNGAATLLTDSGVLQAAAGILAVEAYHAGAIRHYLYENRTTPVAA-GLTVEDVVAAISALRGKVGGGKDEGITKGGKANIVAADANAIAYARTTREVLNIVYLGGSAK-GGFFPNGLN 284
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174169 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGC8_9STRA4.380e-197100.00Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
A0A836CMD7_9STRA9.520e-10967.46Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
A0A836CND4_9STRA8.240e-10565.18Ferritin-like domain-containing protein (Fragment)... [more]
A0A836CQA2_9STRA6.610e-10063.20Ferritin-like domain-containing protein (Fragment)... [more]
A0A835YUW9_9STRA6.720e-9262.34Ferritin-like domain-containing protein n=3 Tax=Tr... [more]
A0A7L9QEA2_9CHLO1.140e-8456.82Putative extracellular protein CSOL_059a n=1 Tax=P... [more]
I0YQP4_COCSC3.250e-8457.03Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A8J9RR61_9CHLO6.970e-8456.59Desiccation-related protein PCC13-62 n=1 Tax=Cocco... [more]
UPI00166CE4191.930e-7856.35ferritin-like domain-containing protein n=1 Tax=De... [more]
A0A511MYZ7_9DEIO2.440e-7654.23Uncharacterized protein n=1 Tax=Deinococcus cellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:388623..391714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174169|e_gw1.111.29.1
DescriptionDesiccation-related protein PCC13-62-like
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGs2CMPR@1|root,2QR8B@2759|Eukaryota,37II1@33090|Viridiplantae
Evalue5.33e-85
Seed ortholog248742.XP_005645257.1
Hectar predicted targeting categoryother localisation
TranscriptId174491
TrackFilteredModels1
ProteinId174169
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174169gene_11905Tribonema minus UTEX_B_3156 geneContig_111 388623..391714 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11905_1exon_11905_1Tribonema minus UTEX_B_3156 exonContig_111 388623..388760 +
exon_11905_2exon_11905_2Tribonema minus UTEX_B_3156 exonContig_111 389460..389802 +
exon_11905_3exon_11905_3Tribonema minus UTEX_B_3156 exonContig_111 390846..390955 +
exon_11905_4exon_11905_4Tribonema minus UTEX_B_3156 exonContig_111 391448..391714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11905CDS_11905Tribonema minus UTEX_B_3156 CDSContig_111 388623..388760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174169Trimin1|174169|e_gw1.111.29.1Tribonema minus UTEX_B_3156 polypeptideContig_111 388623..391714 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11905 ID=mRNA_11905|Name=jgi.p|Trimin1|174169|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=858bp|location=Sequence derived from alignment at Contig_111:388623..391714+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGTCCATCTCTAACCTTCGTGGCGGAGCTCGCGAGCTCGCCAC
CGCAGCACCGTCGGCGGCGCCGTCCTCTGCCCCTGCCATGATGGGAGGCC
CGATCACCGACACCGACATCCTGAACTTCGCGCTCAACCTGGAGTGCCTG
GAGGCCGAGTTCTACTCGTACGCCGCCTTCGGCGCGCCCCTCACCGACGA
GCAGCGCGGCGGCGGACCCGCCTCCATCGGCGGCAAGCAGGCCGTCCTCT
CCGACGACTTTCAGACGTACGCGGAGGAGATTGCCAACCACGAGATCGGC
CACGTGGAGCTGCTGAGGGGAGTGCTCGGCGACGCCGCCGTGCCGTGCCC
GCTCATGGACATTGGCCCCGCGTTCGCCGCCGCCGCGAACGCCGCCGTCG
GCATGAAGCTCGCGCCGGCGTACACGCCGTACTTCAATGACCCTTGGTTC
GCACTTGGAGCCTTTATCTTTGAGGACGTCGGTGTGACAGCTTACAACGG
CGCTGCCCCCCTCATTAAGAACAAGGACTACCTGGCTGCAGCTGCTGGCC
TCCTGGGCGTGGAGGCGTACCATGCAGGCATTGTGCGCACGCTCCTCTAC
CAGGTCAAGGACACCCCACTCACCCCCTACCCCGTCACCGTCGCCGCCGC
GACGACCGCCGTCTCCAACCTGCGCGGCATGGTCGGCGGCGACAAGGACG
TCCCCATCTACGATGGCGGCGAGACGCACCTCGTGCCCGTGGACGAGAAC
TCGCTCGTGTTTGCGCGCACCGTGGACGAGGTCCTCGCCATCGTGTACCT
CGGTGACGCCAAGAAGCCCGGCGGCTTCTTCCCTGATGGCATCAACATGA
TGATGTAA
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protein sequence of jgi.p|Trimin1|174169

>Trimin1|174169|e_gw1.111.29.1 ID=Trimin1|174169|e_gw1.111.29.1|Name=jgi.p|Trimin1|174169|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp
MAKSISNLRGGARELATAAPSAAPSSAPAMMGGPITDTDILNFALNLECL
EAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIG
HVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWF
ALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLY
QVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDEN
SLVFARTVDEVLAIVYLGDAKKPGGFFPDGINMMM*
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mRNA from alignment at Contig_111:388623..391714+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11905 ID=mRNA_11905|Name=jgi.p|Trimin1|174169|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3092bp|location=Sequence derived from alignment at Contig_111:388623..391714+ (Tribonema minus UTEX_B_3156 )
ATGGCCAAGTCCATCTCTAACCTTCGTGGCGGAGCTCGCGAGCTCGCCAC
CGCAGCACCGTCGGCGGCGCCGTCCTCTGCCCCTGCCATGATGGGAGGCC
CGATCACCGACACCGACATCCTGAACTTCGCGCTCAACGTGAGTGCCGCG
CTCGTGTGGATCCTGCGATTTTGCACCATTTGCCGGGGTGCAGCACGGTC
GATCTATGTTGCTAGCTTGAGAGTAGAATTCTATAGATCATGCCGTTCAG
AGGCCATTGTAGACCGCAAAGCAGTGGCGGTCATGGCGGCAGCATGCAAC
GCAATGCAACCTGTGGCAGCGCAGCAAGAACTTTTTGCAGATTCGGCCGG
CATCAGCACGGCCGGTTCATTGCACACTCCAGCGAGGGCTGCCATTCGAG
TACTTGAAATGAAGTAGGGCAATCAGCCGTCATGCTGAATGCAGTTCAGG
TGTTGCTGAGTCTCGATGCTTGGGATGCTTGGGTCCCCGGATTGCAGTCA
GTCGGGCCGACACAAGTCTAGTTCCACTGTCGAAGTGTGCTTTTACGTAA
GCCTGTGTGTAGCTGCATCCAGCAAACAGCTTGATTCACTATCAAAAGGC
TTGTGTGGCACATCCCTGATGGCTTCCCTGTTTTGACTCTCTCAAGCACG
ACTGCTTTCTTTGTGCTGTGCAGGCAACACAGCAAGACCCTCAACCCATT
CCCACTACCCTGCTGCTCTCAACCTCACCTCTCTCAGCACATGCCCATCC
TCCCACCCCTCTGTACCCCACAACCCAAGCCCACCCCACTTCTGCTCACC
TCGCTCCCGCTCCCCACCCCCCCTCCCTCCTCTTCAGCTGGAGTGCCTGG
AGGCCGAGTTCTACTCGTACGCCGCCTTCGGCGCGCCCCTCACCGACGAG
CAGCGCGGCGGCGGACCCGCCTCCATCGGCGGCAAGCAGGCCGTCCTCTC
CGACGACTTTCAGACGTACGCGGAGGAGATTGCCAACCACGAGATCGGCC
ACGTGGAGCTGCTGAGGGGAGTGCTCGGCGACGCCGCCGTGCCGTGCCCG
CTCATGGACATTGGCCCCGCGTTCGCCGCCGCCGCGAACGCCGCCGTCGG
CATGAAGCTCGCGCCGGCGTACACGCCGTACTTCAATGACCCTTGGTTCG
CACTTGGAGCCTTTATCTTTGAGGACGTCGGTGAGTGCGCAGCCGTGTAT
GTGCTTGGAGAGTTGTACTTCGAAGTACAAAAAAAAAAAATTTGTCGCCC
TCGAAACTTTGGCGTTACAGAAGATGCATAGTTTTGGTCTTGTTGTTGTC
ATCTGCTTCATCTACTGTAGCTGTTTGCAGCTTTGCAGCTTTGATAAAAT
CTACTGTAGCTGTTTGCAGCTTTGCAGCTTTTATCAGTGTGCAGTTTTGT
AGTTCAGGAGTATAGAGTGCTGATTGTGTCGTGCCATGTCAGCTAGAAGG
GTTGTGTGTGAGCCTTCAAGAGTTGTAGTTGCTGCTTCGCCATCTTCACA
AAGCTCAACCAATGTAGGTGCCTTCAGCTCTTGTAACATCTGTCTATCAG
GACTCTCGCAGGGCACACAACAGCACTGGTGATTTGTGGAGTTACACAAC
AAATCGCCTTTGTCTACTTAGTAGTTACAAAACTGTTTCCATTCGAAGTA
CAATTGTTAAGCACATACAATGACATCCTCAGAGTGTGACCATACAGCTT
TTAGGACAGCACGAGTCGCGTTTTCATGTTCAGATGAGGTATTTTAAAGT
TTAGTAATACCTGTACAAACTCTCTGGTATAACATTTGCACAGTCTGCAA
CGAAACTGCATTTTCATGTTCAGATGATGGGCATTTCACAGTTTAGTAAT
ACTTGTAGAAGTACAAACTCTCTGGTATAACATTTGCACAATCTGCAACG
AAACTGCATGGTTTTCACAGGTATCGTTATCACTCGCAGTCACAAGTGCC
TCAACATGTAAAATAGCTTTGAAGTTACTGGTAACTGCATGGTGGCGTCC
ACCTTTGTGTCAGTGCAGCCTGCCGCCCCATGTATTGGTTTTCAGCAAGC
AATGGCCATGGAACACAAATGCCGGACTTCTTGAGTGTGGTGAAAGTATG
TTTCTGATCAGATGCAAGCTGACCAGAGTATCCGCGGTGGCACTGTTCAA
AATCATGATTCTTGAATGTATGCATCACAGGAACCACTCTAACTTTGGTG
CTTTCGATTTTTCCGATCCCCAGGTGTGACAGCTTACAACGGCGCTGCCC
CCCTCATTAAGAACAAGGACTACCTGGCTGCAGCTGCTGGCCTCCTGGGC
GTGGAGGCGTACCATGCAGGCATTGTGCGCACGGTGAGTTACTTGCGCTT
CGCGAAGAATGTTGAAGTTCTGCTGTAACATTTATTGCAACCGTTCACAC
TGGGAATTCAAGGCCTTCCTTGTTGATGTGCTTCGCAGCACAGTGCACAC
ACTACTCAGTACCTACACGGTGTTTGACTTTGATTTATCTTATTTAACAA
GTTGAGATGGTTGTAAATTCTTACTTGTTGTGCAACGGCATTCTGCACAT
TTTGTGAGGTGAAGGTACTACCATCAGGTTGAGCTCCTGTCAAAAGTGCA
AGTTCTAGGTGTGGCTTTGCGTGGCTGGGTCCAACAGAGTTCAATCCATG
TGGTATTCCGCCAGTGTGCTAATGTGGTATTCTGCCAGTGTGCCAGCCAG
CTTCATGTCATACTTATTATCACTACATTATGGGTAGGTTTAGGGTTAGC
GCCTCATTCTCGCAGTGCCTCTCTCATCTCTACACAAATAAGCACTTATC
CCCCCCCCCCCCCCCGTTCCCCCAGCTCCTCTACCAGGTCAAGGACACCC
CACTCACCCCCTACCCCGTCACCGTCGCCGCCGCGACGACCGCCGTCTCC
AACCTGCGCGGCATGGTCGGCGGCGACAAGGACGTCCCCATCTACGATGG
CGGCGAGACGCACCTCGTGCCCGTGGACGAGAACTCGCTCGTGTTTGCGC
GCACCGTGGACGAGGTCCTCGCCATCGTGTACCTCGGTGACGCCAAGAAG
CCCGGCGGCTTCTTCCCTGATGGCATCAACATGATGATGTAA
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Coding sequence (CDS) from alignment at Contig_111:388623..391714+

>mRNA_11905 ID=mRNA_11905|Name=jgi.p|Trimin1|174169|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_111:388623..391714+ (Tribonema minus UTEX_B_3156 )
ATGGCCAAGTCCATCTCTAACCTTCGTGGCGGAGCTCGCGAGCTCGCCAC
CGCAGCACCGTCGGCGGCGCCGTCCTCTGCCCCTGCCATGATGGGAGGCC
CGATCACCGACACCGACATCCTGAACTTCGCGCTCAACCTGGAGTGCCTG
GAGGCCGAGTTCTACTCGTACGCCGCCTTCGGCGCGCCCCTCACCGACGA
GCAGCGCGGCGGCGGACCCGCCTCCATCGGCGGCAAGCAGGCCGTCCTCT
CCGACGACTTTCAGACGTACGCGGAGGAGATTGCCAACCACGAGATCGGC
CACGTGGAGCTGCTGAGGGGAGTGCTCGGCGACGCCGCCGTGCCGTGCCC
GCTCATGGACATTGGCCCCGCGTTCGCCGCCGCCGCGAACGCCGCCGTCG
GCATGAAGCTCGCGCCGGCGTACACGCCGTACTTCAATGACCCTTGGTTC
GCACTTGGAGCCTTTATCTTTGAGGACGTCGGTGTGACAGCTTACAACGG
CGCTGCCCCCCTCATTAAGAACAAGGACTACCTGGCTGCAGCTGCTGGCC
TCCTGGGCGTGGAGGCGTACCATGCAGGCATTGTGCGCACGCTCCTCTAC
CAGGTCAAGGACACCCCACTCACCCCCTACCCCGTCACCGTCGCCGCCGC
GACGACCGCCGTCTCCAACCTGCGCGGCATGGTCGGCGGCGACAAGGACG
TCCCCATCTACGATGGCGGCGAGACGCACCTCGTGCCCGTGGACGAGAAC
TCGCTCGTGTTTGCGCGCACCGTGGACGAGGTCCTCGCCATCGTGTACCT
CGGTGACGCCAAGAAGCCCGGCGGCTTCTTCCCTGATGGCATCAACATGA
TGATGTAA
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