mRNA_11887 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|352182 vs. uniprot
Match: A0A835ZES8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES8_9STRA) HSP 1 Score: 627 bits (1618), Expect = 3.470e-220 Identity = 528/528 (100.00%), Postives = 528/528 (100.00%), Query Frame = 1
Query: 1 MGVGANLQPERQKHLLSSSFDAALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVAGAVAAGXXXXXRAQVAEETDALDTVLRTLVAAAARTQGRAAKLAAANTALAGRADDVIAQLQRAQATAQAAIARTATANGNVTAGTTXXXXXXXXXXXXXVPPAARRASAPAPSQTSRTAPPQIHAGNGGDTNAAAASPHAAGEWRRASTGTLPRTPPPQPXXXXXXXXXXXXXXXXHAAAAIAEQALRPPSRITASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAXXXXXXXXXXVSPLSKPVMITPVKLXXXXXXXXXXXXXXXXXXXXXXSKSPPRRGVSLKKLGEQLSARLLCDGSSKGKDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDRELLDLYEQLQQXXXXRQWQESRAPPLXXXXXXXXXXXXXXXLSPLSTARAAAADAAWRTHRDQQRXXXXXAKGVPVSPIGSSKALAAAAVRVTAEGRYSPRA 1584
MGVGANLQPERQKHLLSSSFDAALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVAGAVAAGXXXXXRAQVAEETDALDTVLRTLVAAAARTQGRAAKLAAANTALAGRADDVIAQLQRAQATAQAAIARTATANGNVTAGTTXXXXXXXXXXXXXVPPAARRASAPAPSQTSRTAPPQIHAGNGGDTNAAAASPHAAGEWRRASTGTLPRTPPPQPXXXXXXXXXXXXXXXXHAAAAIAEQALRPPSRITASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAXXXXXXXXXXVSPLSKPVMITPVKLXXXXXXXXXXXXXXXXXXXXXXSKSPPRRGVSLKKLGEQLSARLLCDGSSKGKDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDRELLDLYEQLQQXXXXRQWQESRAPPLXXXXXXXXXXXXXXXLSPLSTARAAAADAAWRTHRDQQRXXXXXAKGVPVSPIGSSKALAAAAVRVTAEGRYSPRA
Sbjct: 1 MGVGANLQPERQKHLLSSSFDAALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVAGAVAAGXXXXXRAQVAEETDALDTVLRTLVAAAARTQGRAAKLAAANTALAGRADDVIAQLQRAQATAQAAIARTATANGNVTAGTTXXXXXXXXXXXXXVPPAARRASAPAPSQTSRTAPPQIHAGNGGDTNAAAASPHAAGEWRRASTGTLPRTPPPQPXXXXXXXXXXXXXXXXHAAAAIAEQALRPPSRITASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAXXXXXXXXXXVSPLSKPVMITPVKLXXXXXXXXXXXXXXXXXXXXXXSKSPPRRGVSLKKLGEQLSARLLCDGSSKGKDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDRELLDLYEQLQQXXXXRQWQESRAPPLXXXXXXXXXXXXXXXLSPLSTARAAAADAAWRTHRDQQRXXXXXAKGVPVSPIGSSKALAAAAVRVTAEGRYSPRA 528
BLAST of jgi.p|Trimin1|352182 vs. uniprot
Match: A0A836CJH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH7_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 7.950e-13 Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 52 SSFDAALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVA 234
+SFDAALQEL+EFQQQPKED + +V +R HVQ+V +LYWQA QAREKGRKL D E VA
Sbjct: 94 TSFDAALQELVEFQQQPKEDTGSYIVRARRHVQDVKMLYWQAAAQAREKGRKLPDLSECVA 154
BLAST of jgi.p|Trimin1|352182 vs. uniprot
Match: A0A835YLH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLH3_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.940e-10 Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 52 SSFDAALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVA 234
+SFDAALQELI+FQQQP +I MV R HVQ V +LYWQAV QAR+KGRKL D + VA
Sbjct: 82 TSFDAALQELIKFQQQPNINIGNYMVRPRRHVQAVKMLYWQAVAQARDKGRKLPDLIKCVA 142
BLAST of jgi.p|Trimin1|352182 vs. uniprot
Match: A0A835Z8X0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.140e-9 Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 67 ALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVA 234
A+ EL+EFQQQ KED + +V +R HVQ+V +LYWQA QAREKGRKL D E VA
Sbjct: 29 AMPELVEFQQQTKEDTGSYIVRARRHVQDVKMLYWQAAAQAREKGRKLPDLFECVA 84
BLAST of jgi.p|Trimin1|352182 vs. uniprot
Match: A0A835YMC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC2_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 7.290e-9 Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 52 SSFDAALQELIEFQQQPKEDISTDMVLSRLHVQEVNVLYWQAVTQAREKGRKLLDAPEAVA 234
+SFDAALQEL+EFQQQPK +IS MV +R HVQ V +LYWQAV QAR+ D E VA
Sbjct: 279 TSFDAALQELVEFQQQPKANISNYMVRARRHVQTVKMLYWQAVAQARDHHGSYPDLVECVA 339 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352182 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11887 ID=mRNA_11887|Name=jgi.p|Trimin1|352182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1587bp|location=Sequence derived from alignment at Contig_111:274022..277076+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCGTCGGCGCCAACCTGCAGCCTGAACGCCAAAAACATCTTTTGAGback to top protein sequence of jgi.p|Trimin1|352182 >Trimin1|352182|estExt_Genemark1.C_Ctg_1110032 ID=Trimin1|352182|estExt_Genemark1.C_Ctg_1110032|Name=jgi.p|Trimin1|352182|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=529bp MGVGANLQPERQKHLLSSSFDAALQELIEFQQQPKEDISTDMVLSRLHVQback to top mRNA from alignment at Contig_111:274022..277076+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11887 ID=mRNA_11887|Name=jgi.p|Trimin1|352182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3055bp|location=Sequence derived from alignment at Contig_111:274022..277076+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_111:274022..277076+ >mRNA_11887 ID=mRNA_11887|Name=jgi.p|Trimin1|352182|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1587bp|location=Sequence derived from alignment at Contig_111:274022..277076+ (Tribonema minus UTEX_B_3156 )back to top |