mRNA_11883 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352181
Unique NamemRNA_11883
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A836CM72_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM72_9STRA)

HSP 1 Score: 579 bits (1492), Expect = 1.450e-207
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1 
Query:    1 MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRLRRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQNGDESAATAXXXXXXXXXXXXXXXXXXXXXXXXAACADGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIAPRFFL 981
            MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRLRRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQNGDESAATAXXXXXXXXXXXXXXXXXXXXXXXXAACADGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIAPRFFL
Sbjct:    1 MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRLRRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQNGDESAATAXXXXXXXXXXXXXXXXXXXXXXXXAACADGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIAPRFFL 327
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.360e-26
Identity = 69/171 (40.35%), Postives = 83/171 (48.54%), Query Frame = 1 
Query:  415 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEP-----------------VGLDLALSFQENQGCMEIWSQITDVQGR 876
            GWRVKLYQLN +GQWD +GTG+ISC+ + ++  TAL V++E DG +L+Q                                                       SKV D DVY+RQGDNIITWCE                   G+DLALSFQEN GC+EIW QI DVQGR
Sbjct:    5 GWRVKLYQLNDEGQWDDRGTGHISCRAVESLGGTALVVLAEEDGRELMQ-------------------------------------------------------SKVVDEDVYQRQGDNIITWCEAPPLIGAANSGVAAARGAAGVDLALSFQENVGCLEIWDQICDVQGR 120
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.370e-26
Identity = 69/171 (40.35%), Postives = 83/171 (48.54%), Query Frame = 1 
Query:  415 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEP-----------------VGLDLALSFQENQGCMEIWSQITDVQGR 876
            GWRVKLYQLN +GQWD +GTG+ISC+ + ++  TAL V++E DG +L+Q                                                       SKV D DVY+RQGDNIITWCE                   G+DLALSFQEN GC+EIW QI DVQGR
Sbjct:   92 GWRVKLYQLNDEGQWDDRGTGHISCRAVESLGGTALVVLAEEDGRELMQ-------------------------------------------------------SKVVDEDVYQRQGDNIITWCEAPPLIGAANNGVAAARGAAGVDLALSFQENVGCLEIWDQICDVQGR 207
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 107 bits (268), Expect = 1.030e-22
Identity = 62/163 (38.04%), Postives = 82/163 (50.31%), Query Frame = 1 
Query:  415 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV----GLDLALSFQENQGCMEIWSQITDVQGRKNSAR 891
            GWRVKLYQLN  GQWD +GTG+ISC ++  +   AL +++E +  +LL+                                                       SK+ D DVY+RQGDNIITW EP     G+DLALSFQEN GC+EIW+++ DVQG+ +  R
Sbjct:    7 GWRVKLYQLNDQGQWDDRGTGHISCTFVEEL-GNALVILNEENQQELLK-------------------------------------------------------SKIIDEDVYQRQGDNIITWTEPEENGSGVDLALSFQENAGCLEIWNKVCDVQGKYSEFR 113
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A1E7FC66_9STRA (DUF625-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FC66_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.360e-17
Identity = 59/165 (35.76%), Postives = 76/165 (46.06%), Query Frame = 1 
Query:  412 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV--------GLDLALSFQENQGCMEIWSQITDVQGRKN 882
            +GWRVKLY+LN+DG WD  GTG I      +  AT+   + +                             HIS+S N    P                      +++   D Y+RQGDNIITWCEP         G+DLALSFQ+N GC++IW QITDVQ + N
Sbjct:   36 EGWRVKLYRLNADGSWDDCGTGRI---LFSSSAATSTLSIQQQT---------------------------HISSSNNSTGNP-----------------RILLRTRILLRDAYQRQGDNIITWCEPYLEEGNPAQGVDLALSFQDNAGCIDIWRQITDVQSKAN 153
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A4D9DCZ9_9STRA (SMK-1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.890e-16
Identity = 56/169 (33.14%), Postives = 73/169 (43.20%), Query Frame = 1 
Query:  412 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVG-----LDLALSFQENQGCMEIWSQITDVQGRKNSARQAAE 903
            +GWR KLYQL+ +GQWD KGTG+++ K    +  TA     E DG  LL L                                                       ++   D+Y+RQGDNIITW EP        D+ALSFQ+ QGC  IW ++  VQGR +S  +A E
Sbjct:  110 EGWRFKLYQLDVEGQWDDKGTGFLTIKNDERLGGTAFQASKEDDGSVLLNL-------------------------------------------------------RIQPEDIYQRQGDNIITWTEPGAHGKDPYDMALSFQDEQGCRHIWERLVSVQGRYHSDYRAFE 223
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A7S2D4C1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4C1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.050e-15
Identity = 57/160 (35.62%), Postives = 72/160 (45.00%), Query Frame = 1 
Query:  412 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVS-DSDVYRRQGDNIITWCEPVG----LDLALSFQENQGCMEIWSQITDVQGR 876
            +GWRVKLYQLN DGQWD +GTG I   +  A+    + VVSE     L+                                                        S+++ D D Y  QG++IITW E  G    LDLALSFQEN+GCM+IW QI ++QGR
Sbjct:   22 EGWRVKLYQLNDDGQWDDRGTGKIRVDHAEALGTPCVHVVSEESSRDLV-------------------------------------------------------TSRITEDRDAYSLQGESIITWEERRGAQGSLDLALSFQENEGCMQIWHQIQEIQGR 126
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A7S1V078_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V078_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.060e-15
Identity = 60/178 (33.71%), Postives = 77/178 (43.26%), Query Frame = 1 
Query:  412 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEAT--ALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV---------------------GLDLALSFQENQGCMEIWSQITDVQGR 876
            +GWRVKLY+LN+DG WD  GTG I C Y     +T  A    +      LL   G          +  L           + TL         C       +     +++   D Y+RQGDNIITWCEP                      G+DLALSFQ+N GC++IW QIT VQ +
Sbjct:    8 EGWRVKLYRLNNDGSWDDCGTGRIVCLYRGKPVSTKPATGDAASSSSSSLLSTDGNPDKSLQEEVYHLLG----------EPTL---------CMHAETTAARVLLRTRILLRDAYQRQGDNIITWCEPFFEEQTRDTTGIGQIGAAAAGGGVDLALSFQDNAGCLDIWRQITHVQSK 166
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A448ZI04_9STRA (SMK-1 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI04_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.800e-15
Identity = 67/213 (31.46%), Postives = 89/213 (41.78%), Query Frame = 1 
Query:  412 DGWRVKLYQLNSDGQWDAKGTGYISCKY-----------------IH------AVEATA-----------------------LCVVSEVDGCQLL--QLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV--------GLDLALSFQENQGCMEIWSQITDVQGRKN 882
            +GWRVKLY+LN+DG WD  GTG I C Y                 IH      A+ A +                       LC+ SEV     +   +                   + +S S N  T+           + R   S     +++   D Y+RQGDNIITWCEP         G+DLALSFQ+N+GC++IW QIT VQ + N
Sbjct:  318 EGWRVKLYRLNADGSWDDCGTGRILCLYKQKQPGQKKNNNSPSDTIHNGNGEXAMNAESNPSQSPSGPLSDSEIYVELGEPTLCMHSEVASTNGMPSSIQQQXXXXXXXXXXXXXXXXSDLSNSDNQQTI-----------SARNTGSRILLRTRILLRDAYQRQGDNIITWCEPYLEEGNPTQGVDLALSFQDNKGCIDIWRQITQVQSKAN 519
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BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: B7GB45_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GB45_PHATC)

HSP 1 Score: 86.3 bits (212), Expect = 8.380e-15
Identity = 77/237 (32.49%), Postives = 91/237 (38.40%), Query Frame = 1 
Query:  412 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPG--TFSGAFRALAGGAHISASKNDFTLPVPVPGSPPC-------------AAGRGAFSAAFRASKVSDS------------DVYRRQGDNIITWCEPV-------------------------GLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIA 966
            +GWRVKLY+LN+DG WD  GTG I C Y           V +         V +  P   T+S         A  S            P SP                 G         ASK + S            D Y+RQGDNIITWCEP                          G+DLALSFQ+N GC++IW QIT VQG      QAAEL     +ET   SS+     A
Sbjct:  204 EGWRVKLYRLNADGSWDDCGTGRILCLYRTPGVQKPTSPVQDGHQANTNTSVASTLPSEATYS---------AETSTXXXXXXXXXXSPASPTSNKVKTNVDQWLHTETGEATLCVHAEASKQNSSRRVLLRTRVLLRDAYQRQGDNIITWCEPYYGNRATSPDGNATSTSGXXXTSSTSGVDLALSFQDNAGCLDIWRQITQVQG------QAAELL----QETLAASSSVEDMAA 421
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM72_9STRA1.450e-207100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FI53_ECTSI4.360e-2640.35SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKJ6_9PHAE6.370e-2640.35SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3YI92_HETAK1.030e-2238.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1E7FC66_9STRA2.360e-1735.76DUF625-domain-containing protein n=1 Tax=Fragilari... [more]
A0A4D9DCZ9_9STRA2.890e-1633.14SMK-1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2D4C1_9STRA2.050e-1535.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1V078_9STRA3.060e-1533.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448ZI04_9STRA7.800e-1531.46SMK-1 domain-containing protein n=1 Tax=Pseudo-nit... [more]
B7GB45_PHATC8.380e-1532.49Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:207761..212882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352181|estExt_Genemark1.C_Ctg_1110027
BRITEko00000,ko00001,ko01009,ko03400
KEGG Pathwayko04212,ko04922,map04212,map04922
KEGG koko:K17491
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
Preferred nameSMEK2
Descriptionsignal transduction involved in meiotic cell cycle checkpoint
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2175@1|root,KOG2175@2759|Eukaryota
Evalue7.15e-27
Seed ortholog2880.D7FI53
Hectar predicted targeting categorysignal peptide
TranscriptId352503
TrackFilteredModels1
ProteinId352181
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352181gene_11883Tribonema minus UTEX_B_3156 geneContig_111 207761..212882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352181Trimin1|352181|estExt_Genemark1.C_Ctg_1110027Tribonema minus UTEX_B_3156 polypeptideContig_111 207761..212882 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11883_9exon_11883_9Tribonema minus UTEX_B_3156 exonContig_111 207761..207869 -
exon_11883_8exon_11883_8Tribonema minus UTEX_B_3156 exonContig_111 208587..208606 -
exon_11883_7exon_11883_7Tribonema minus UTEX_B_3156 exonContig_111 209386..209514 -
exon_11883_6exon_11883_6Tribonema minus UTEX_B_3156 exonContig_111 209576..209660 -
exon_11883_5exon_11883_5Tribonema minus UTEX_B_3156 exonContig_111 209828..209907 -
exon_11883_4exon_11883_4Tribonema minus UTEX_B_3156 exonContig_111 211026..211402 -
exon_11883_3exon_11883_3Tribonema minus UTEX_B_3156 exonContig_111 212194..212224 -
exon_11883_2exon_11883_2Tribonema minus UTEX_B_3156 exonContig_111 212309..212393 -
exon_11883_1exon_11883_1Tribonema minus UTEX_B_3156 exonContig_111 212815..212882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11883CDS_11883Tribonema minus UTEX_B_3156 CDSContig_111 212815..212882 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11883 ID=mRNA_11883|Name=jgi.p|Trimin1|352181|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_111:207761..212882- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATGGTGCTGTCCATCGTAGCCAGCGCCTTCCAGCTCGAGGCCAT
GTGGCTCGAACAGCTCTCGCGGGGAGCGACTCTTGCAGAGGGGGCTGAGA
ACTTTGGTGCTGAGCTGGAGCAGCTGGCGCTAGGGCCTGGTGGTCGTCTC
AGGCGCACGGGCCTGCTGGCTGCACCGGACGGAGCTGCCGCCAATGCCGC
GGCCATTGTAAAAAGGGAACCCGCAGCGGGCTCTGGGCATGATGTAGCGG
GTGCTGCGGGGCCACATTTAGCTGGCGGCGCCTCTGAAATGGGTGTACAA
AACGGCGACGAGTCAGCAGCCACAGCAGCAACGGCTGGCAGCGCCGGGGG
CGCTGCTGCAACAGCTGCGGGGGCGGCGGCAGCGGGGGGGGTGGCGGCGG
CCGCGTGCGCGGACGGCTGGCGCGTTAAGCTGTACCAGCTGAACAGCGAC
GGGCAGTGGGATGCCAAGGGCACGGGCTACATCAGCTGCAAGTACATACA
CGCAGTGGAGGCGACAGCGCTGTGCGTCGTCAGCGAGGTGGACGGGTGCC
AGCTCCTGCAGCTGGTCGGGGCGCGTTCTCCGGGAACGTTCTCCGGCGCG
TTCCGCGCTCTCGCCGGCGGCGCGCACATCTCAGCTTCGAAGAACGATTT
CACGCTGCCGGTGCCGGTTCCGGGCTCGCCACCTTGCGCCGCTGGTCGGG
GCGCGTTCTCCGCCGCGTTCCGCGCTAGCAAGGTGTCCGACAGCGACGTG
TACCGGCGGCAGGGCGACAACATCATCACGTGGTGCGAGCCCGTAGGCCT
GGACCTGGCGCTGAGCTTCCAGGAAAACCAGGGCTGCATGGAGATCTGGA
GCCAGATCACCGACGTGCAGGGCAGGAAGAACAGTGCTCGGCAGGCAGCT
GAGCTGCGCTGCCCAGTGGAGGAGGAGACGTGGCTGCGCAGCAGCGCAGC
GTCTCCACGCATCGCGCCACGCTTCTTCCTCTGA
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protein sequence of jgi.p|Trimin1|352181

>Trimin1|352181|estExt_Genemark1.C_Ctg_1110027 ID=Trimin1|352181|estExt_Genemark1.C_Ctg_1110027|Name=jgi.p|Trimin1|352181|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRL
RRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQ
NGDESAATAATAGSAGGAAATAAGAAAAGGVAAAACADGWRVKLYQLNSD
GQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGA
FRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDV
YRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAA
ELRCPVEEETWLRSSAASPRIAPRFFL*
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mRNA from alignment at Contig_111:207761..212882-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11883 ID=mRNA_11883|Name=jgi.p|Trimin1|352181|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5122bp|location=Sequence derived from alignment at Contig_111:207761..212882- (Tribonema minus UTEX_B_3156 )
ATGACAATGGTGCTGTCCATCGTAGCCAGCGCCTTCCAGCTCGAGGCCAT
GTGGCTCGAACAGCTCTCGTGAGGTCACCACCGATCTTGGGATCCCAAGT
GTGTCATCGTCCTTTCGCCCGCTGCCATGGCTGCTGCTGCTTGTGCTAGT
GGTGCACCTGATGATCTTGTCCTGCCGCAACCTGCTGCAGCCAGTCTTGA
GAGCTGCCAACAATCTGGCTGCGTGCACAGCCATTCAATTTTCGATTCGC
GCCTAACCTCACCAGTTCCGGCTGCTGGAGCCGCTGCGAACGAAACTGCA
TGCCTGCATCGCGCGCCGCCCGGCTCACTCAGACCACGGAAGCAGAATCA
GGTACGTCATGCAGGGGTGTGTGTGCACATGCTTTTGATCATGAATTTTT
TCATTTTTTTGAATGTGAATTTTCTCCAGAGGGGGAAATCGGGGGGTAGG
GTCATCAGTGGGCTTCACATTGTCTTGCAGTGCCGCCAGGCGGGGAGCGA
CTCTTGCAGAGGGGGCTGAGAACTTTGGTGCTGAGCTGGAGCAGCTGGCG
CTAGGGCCTGGTGGTCGTCTCAGGGTGAGCAGGCAAGGATGACAACCGGT
GCGCAGTGGGGACGCATTTGAGAGAAGCTATTTTTCAGCACCACTGCTGG
CGCCGGAGCGCACGGGCCTGCTGGCTGCACCGGACGGAGGTGAACGCAGG
CACAGTGGTCGGCACGCTCTTAAGAGGCTTTTTTGTTTTCAGTCGCCGCG
CTGGTCATTGTGTTGCTCCACTTCTCGGGAAAGCGGGGTGCGTGCTTGAA
GGTTTGGCAGGCAGCGTGTCGGAGTCCTCTGCGCCGCTCGGTTTTTGACA
GGAAGCCGATACTGCCGTCATATTCAGGTCGCATTTCCTGACGTTGGCGC
TTCAATATTGAGGCCCGATGCTCGTGCACCTCGCGCAGCGGGCCCTGTCG
CTCTTTTGTTTTCAAACAATCATCTTCCACCCGTATCATGCGTTTGTTGG
TGCCGCTGTTCGCCAGGTCGATTATGGCGGCAAGCCTGACCTCGCCAACG
GGCTGAGCCAGGCGCAGTTTCAATTGACAGCGTCCAATCGCAACGCATAG
GAGTTTCTGGTGCCGACGCCGCCGTGGCGGAGTGTCTCACGATTACTGGC
CATTAGGATTGCAGCGCGAGGACAGGGCAGAGCACTGAGCGGTCTCAGCG
AGGAAGCGAGCGGGCGCCGGCGCGCACCGCCGCGGGGCTATGACTGATAC
ACTTTCGCTGCTGAATGGCGGCGGTGAGGGACACAGAGCCCCCAGTCACC
ACGGTGTTCACGTGCAGCAGCAGCAGCAGCACCACCACCATAAGCTTGCT
TCTGCATCGCCGGCAGCAACACCAGCAGCAGCAGCAGCAGCTCCAGCACA
CCAATCACATCAGCCATTGAAACAGGAGCCAGATGAAAGTGCGGCCGCCA
TTGCGGCGGCTGCTGCCGCTGCCGTCGCAGCTGCCGCCAATGCCGCGGCC
ATTGTAAAAAGGGAACCCGCAGCGGGCTCTGGGCATGATGTAGCGGGTGC
TGCGGGGCCACATTTAGCTGGCGGCGCCTCTGAAATGGGTGTACAAAACG
GCGACGAGTCAGCAGCCACAGCAGCAACGGCTGGCAGCGCCGGGGGCGCT
GCTGCAACAGCTGCGGGGGCGGCGGCAGCGGGGGGGGTGGCGGCGGCCGC
GTGCGCGGACGGCTGGCGCGTTAAGCTGTACCAGCTGAACAGCGACGGGC
AGTGGGATGCCAAGGGCACGGGCTACATCAGCTGCAAGTACATACACGCA
GTGGAGGCGACAGCGCTGTGCGTCGTCAGCGAGGTGGACGGGTGCCAGCT
CCTGCAGGTGAGGCGCGCGCCTGCGGCGCGTTGTGCTGGCGTCGTGCGCT
CTCATGTGCCGTATTGCGCACCTGTCTCACAAGGCTTGCACGCGCGAAAG
TGTGTGGCACCAGTAGGGCAGTTCTGTCGACTTCCATTGTGCATGCTCGG
TGTTTGACCTTCATCGGGCGCGACGTCAGTACGCAGGTAACTGCAGGCGT
TACGTAGGGTACGACAGGGATCACGATGCGCAGGTCATCATGTTTGGTAC
GACATATGCATGCGAGCCACTGCAGCGCTTGTCAAATTGTATTACCCTAT
GCCAGTGCGCACTTGCTTGGTGTAAATGGACGTTGCTGGCAATAAAACAG
CACGCGTTGGGCTGCTTGCAGTTGAGGTTGGAGTAATTGGAGTTCATTTG
GGGGCGCCTCAGCATCCGGAGAGACACGTGAGGCATTTTGACGGTCGGCT
GTCTGCAGTGCATGACAAAAGCGCAAATGTGTTAGGTGGCACTCTGCAGT
TGGTCGCGTCACTATTGTGCGGTCTGTCGCTTGCGGACGACTCTCTGGCG
AGGCCTCGCATGACGTCTGAAGGTAGCCATGTTGAAGTGCATGTTGAAGT
GCGTGGAGGAGCTTGCACGTAGCCTACACAATGTTGACCTGCCATGCGGG
CGCCACGCTTGGCGTCGCAGCGTGCCAGCTTCAGCGATTGCGATGTCCAA
CAGCCATCAAGCCTGGGGCGGCGCATCCGCATGCGCTCTTGCCAGCCTTG
TTTGTACCGCCCGGGCAACGCTGCATGCGGCCAGCATTGCTCTGAGCCGC
CTAAATATCACGCAGCGCTGCTCGCGGGCCGCCAGCACACACGCTGCACG
CAACTAGCAGGCCCACCACAAGTGTGCGTCGCGGAGCACGCGGAGCGGCT
TGACGTGCACCACGCGCGCAGTGCGCATCTCAGAGGACCGTGCGGCGTTG
CTTTTTGGGGGGGGTGCCCCCGCGCGTCGACGCGCCTCGCTGCTGAGCGT
CATCGCCTCCGTGGTGGCGCATGCCGTCAGCGCCTGACACGCTGAGGAAC
GCTGCTCAATATCGTGCTCTCTCTCATGTGCCTGCCGTCAGTACCAGGCT
CGCGGCCTTGACTTGACTTGACCAGCTGGTCGGGGCGCGTTCTCCGGGAA
CGTTCTCCGGCGCGTTCCGCGCTCTCGCCGGCGGCGCGCACATCTCAGCT
TCGAAGTCGGAGGGAGTGACTTACACTGCTGTCCCGATATTAGATGAAAG
CCCCTCGTAAAGTTTTCGGCCCCGTGGGTGATCGATCCAGCGATGTGATG
CCACTGACGCGCGTGTGTCGCACGCCACCACTGCCCCCCTCGCGCCGCGC
CGCCAGCGCCTGGCTTTCGGAGGAACGATTTCACGCTGCCGGTGCCGGTT
CCGGGCTCGCCACCTTGCGCCGCTGGTCGGGGCGCGTTCTCCGCCGCGTT
CCGCGCTGTCGCACCAACGCCACTGACGCGCGCCTCGCACGCCACCGCCC
CCCGCGCCGCTATCGCAGAGCAAGGTGTCCGACAGCGACGTGTACCGGCG
GCAGGGCGACAACATCATCACGTGGTGCGAGCCCGTAGGCCTGGACCTGG
CGCTGAGCTTCCAGGAAAACCAGGGCTGCATGGAGATCTGGAGCCAGGTG
AGCGGGGGGGAAGGGGGGGGGGGGGGGGGTTGGTGGGGGAAGGGGGAGGG
GGGAGGGGGGGGTACAGTGAATGCGTGAACGCGCAAGAGCAGGAGCAAGC
ACATCGAAGCCCAGCAGCGGCTGCGCGACTTGCGGTCAGTTTGTGAAGTG
ACAGTCTGTACATGTGAAGTGACAGTTGGCACCCCAACTTCAACTCTGTA
CACACGTCTGTACGTGCGGTTGCCTATTTGCAGCGCACCAGCAAGCCTGC
AGTGCGCTCGCCGCTCCGACCCAGACTGACTGGCGCATGCTGCTGCAGTG
TCGCAAGCGTAGGCACGTCTGCAAATCACTGCCTCCGCGCACTCCTTATG
CCACCTGCGCTCTGCAGCTCGCACACTTCACCCTGTCCGCCATTGCAAAG
TTGCTAGTGCTGCAGGTGCCAGTTGGTGTTCAGGCTGCGCTCTGGTCGAG
CAGCGGCGGTATCATGCATCCATAAGGCCCCTATTAGCCGCTCCGTTCGA
GATCAATGCTCACTGCGCGATCCGATGCCGCCTCTTCCGTCGCCAACACA
CGTCGGACCGCCCAGTGTGCGCAGGATGTCTGGCGTTAGCTCACAACGGT
GTATACCTACGTGCCCCTGCTTCTGCACGCGCACAACGCAGCCTGGCGTC
AGCTTTAAGTCTCCGGTAATGACTGCCGCCAGCTCGCTGTTTACATTTCC
GCCTGCCACTGCGCCGCGTGCCAGTTTCATGACTGTCTTGCGCATCTGCT
GCCACGCGCCCCCCCCCCCCCTCCAGATCACCGACGTGCAGGGCAGGTAC
AGCCTGGAGTACAGAGACCGGGGGAGTCGCGAGGGTCCAGCGCAGGGGGG
GCGGGCGGGGGAGGGGGGGGCGTTGTCACGCTGCCCGACCCACGGCTCGA
CAACTTGCAGGACATATTGGAGGCAGCGGTGGCGGCCGCCGCAAGTCCGG
AACCACAGGTGCGTACGGCTGACTCAAGGAGACAGCCGGCTCGATTTGGG
GGTTGTGTGTTTCGTAAAGCTGTTGTTTGCGGCGCAACGGGGCCACGCCG
TGGTGCTTGGACCGCTCTTGGCGCTTCTTGCAACATCGGGGTGCGTTCTA
GCGGCGGTGGCGGCGGTGGCGGCGGCAGCATCAGCGGCGGCGGCTGCGCC
TTCCAAAGAATTGCGGCTTCTCTTAACCGGCTGCACCCGCGGTTTCTCTC
GACCGGGTGCAGCCGGCGGGACAGGACGCGCTTCCGTCCGTGTGCTGCTG
CCATGCACGCAACGCATCACATGCATAGGTAGGCATGTATACACGGAAAT
TTCGGCGCGGCAGCGCGCGCAGTGCTCAGCGGCCGGGGGCAGCGCTCACT
GCGCAGCGGGCAGCCGGCGCCCCAGTGCGCAGTGAGCAGGCAGTGGTCAG
CACGCAGGGGGGCAAGCAGCGCGGCAGACGCACGCAGACCTGCAGTGAGT
GGCTGCCCGCAGCGTGACCTTGACTCATGGCATGAGCTGCTGCAAGTGAG
TCCTGCACTGCAGGAAGAACAGTGCTCGGCAGGCAGCTGAGCTGCGCTGC
CCAGTGGAGGAGGAGACGTGGCTGCGCAGCAGCGCAGCGTCTCCACGCAT
CGCGCCACGCTTCTTCCTCTGA
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Coding sequence (CDS) from alignment at Contig_111:207761..212882-

>mRNA_11883 ID=mRNA_11883|Name=jgi.p|Trimin1|352181|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_111:207761..212882- (Tribonema minus UTEX_B_3156 )
ATGACAATGGTGCTGTCCATCGTAGCCAGCGCCTTCCAGCTCGAGGCCAT
GTGGCTCGAACAGCTCTCGCGGGGAGCGACTCTTGCAGAGGGGGCTGAGA
ACTTTGGTGCTGAGCTGGAGCAGCTGGCGCTAGGGCCTGGTGGTCGTCTC
AGGCGCACGGGCCTGCTGGCTGCACCGGACGGAGCTGCCGCCAATGCCGC
GGCCATTGTAAAAAGGGAACCCGCAGCGGGCTCTGGGCATGATGTAGCGG
GTGCTGCGGGGCCACATTTAGCTGGCGGCGCCTCTGAAATGGGTGTACAA
AACGGCGACGAGTCAGCAGCCACAGCAGCAACGGCTGGCAGCGCCGGGGG
CGCTGCTGCAACAGCTGCGGGGGCGGCGGCAGCGGGGGGGGTGGCGGCGG
CCGCGTGCGCGGACGGCTGGCGCGTTAAGCTGTACCAGCTGAACAGCGAC
GGGCAGTGGGATGCCAAGGGCACGGGCTACATCAGCTGCAAGTACATACA
CGCAGTGGAGGCGACAGCGCTGTGCGTCGTCAGCGAGGTGGACGGGTGCC
AGCTCCTGCAGCTGGTCGGGGCGCGTTCTCCGGGAACGTTCTCCGGCGCG
TTCCGCGCTCTCGCCGGCGGCGCGCACATCTCAGCTTCGAAGAACGATTT
CACGCTGCCGGTGCCGGTTCCGGGCTCGCCACCTTGCGCCGCTGGTCGGG
GCGCGTTCTCCGCCGCGTTCCGCGCTAGCAAGGTGTCCGACAGCGACGTG
TACCGGCGGCAGGGCGACAACATCATCACGTGGTGCGAGCCCGTAGGCCT
GGACCTGGCGCTGAGCTTCCAGGAAAACCAGGGCTGCATGGAGATCTGGA
GCCAGATCACCGACGTGCAGGGCAGGAAGAACAGTGCTCGGCAGGCAGCT
GAGCTGCGCTGCCCAGTGGAGGAGGAGACGTGGCTGCGCAGCAGCGCAGC
GTCTCCACGCATCGCGCCACGCTTCTTCCTCTGA
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