mRNA_11881 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174161
Unique NamemRNA_11881
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A836CNG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG3_9STRA)

HSP 1 Score: 427 bits (1098), Expect = 1.280e-150
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 
Query:    1 MAASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLKVSAVTDVHT 702
            MAASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLKVSAVTDVHT
Sbjct:    1 MAASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLKVSAVTDVHT 234
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 9.510e-79
Identity = 145/265 (54.72%), Postives = 183/265 (69.06%), Query Frame = 1 
Query:    4 AASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGD--------------------EGGGEXXXXXXXXXXXXXXXXCL---------------------AHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLK 675
            ++S    R++LFWVI RLTTD D GV++QAAE+ R+ LDTE+M+GQ DRD FLG FY+HY+ WLVEPFW GD                    +G G+       XXXXXXXXX                        H+CDLLS+CVRSHT+RMKYFVLRN++V+RVLRL  C DK+LQL+AVRFLR+CVGIKD+FYNRY+VKNNLLAPVFAL  +N  +DNLI SA++EL+EF+R+ENVKSL+E++VERF S F ++     L+
Sbjct:  459 SSSVSECRALLFWVIRRLTTDQDTGVLLQAAEICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNEGMGANGEVARGSSKGGKGDGKAGGFRQGXXXXXXXXXXXXXXXXXXGDARSKMRMLQVSRGHICDLLSFCVRSHTFRMKYFVLRNNVVSRVLRLLSCNDKYLQLSAVRFLRSCVGIKDEFYNRYLVKNNLLAPVFALFRENRGRDNLINSAVIELVEFIRTENVKSLVEHVVERFSSSFVEVDQTGTLE 723
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A7S2RPQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPQ1_9STRA)

HSP 1 Score: 211 bits (537), Expect = 2.440e-63
Identity = 107/226 (47.35%), Postives = 152/226 (67.26%), Query Frame = 1 
Query:    4 AASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQ--GDEGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLK 675
            A  A  ++S++  +I  L    DV V++  AE +R C+DTE ++   +RD+FL  FYD+Y+ WLV+P  +   +E  G                    H+CD+LSYCV+SHTYRMKYFVLRN++V R+L L   RDKFL+LAA+RF+R C+G KD+FYNRYIVK+NLLAPVF L A N  +DNL++SAI+++++F+R+EN+KSL+EY VE F + F  + +    K
Sbjct:    5 AVGARTNKSLMALLIHYLVHSDDVDVLLNCAEAVRSCVDTELLEA-TERDSFLTLFYDYYLHWLVDPIVEHTSEEARGAHAHPPPLTVAKKSS---FGHICDILSYCVKSHTYRMKYFVLRNNLVGRILELLHQRDKFLKLAALRFVRQCIGAKDEFYNRYIVKHNLLAPVFTLFAANQGRDNLVSSAIIDMIDFVRTENIKSLVEYSVENFATYFEDVEYVETFK 226
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A7S2D4C1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4C1_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.260e-58
Identity = 104/225 (46.22%), Postives = 153/225 (68.00%), Query Frame = 1 
Query:    4 AASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXXCL-AHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLK 675
            A   + + S+L+ V+  +T+++D GV++   +V++ CLDTE M+  ++RD FL  FYDHYI+WLV+P    ++   +                 +  ++CDLLS CVR+HTYRMKYFVL N IV R+L LA   DKFL+LAA+RF+R+ +G+KDDFYNRY+VKN LLAP+F LL   A KD L+TSAI+++ + +R+EN+K+L+E+IVE++   F Q+ H    K
Sbjct:  452 AGGTDKASSLLWHVVRLITSESDTGVLLHLLDVVKTCLDTEPME-PSERDKFLALFYDHYIKWLVDPVLPNEKDDSDRPVTDTVSVPTSPERMTMQGYVCDLLSSCVRTHTYRMKYFVLGNRIVGRILSLADTDDKFLKLAAIRFVRSIIGVKDDFYNRYLVKNGLLAPLFVLLKTVAHKDCLLTSAIVDMADHIRTENIKALVEHIVEKYSDSFDQVEHVDTFK 675
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 6.620e-57
Identity = 106/221 (47.96%), Postives = 132/221 (59.73%), Query Frame = 1 
Query:   58 TTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGD-----------------------------------------------EGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLE 579
            T+ A  G +   A++ R+ LDTE+M+GQ DRD FLG FY+HY+ WLVEPFW GD                                                GGG+                   H+CDLLS+CVRSHT+RMKYFVLRN++V+RVLRL  C DK+LQL+AVRFLR+CVGIKD+FYNRY+VKNNLLAPVFAL  +N  +DNLI SA++EL+E
Sbjct:  405 TSSAAGGGLGSGAKICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWVGDLSNEGMGANGEVARGSSKGGKGDGKAGGFRQGGVGSDSSSSXXXXXXXGGGDARSKMRMLQVSR------GHICDLLSFCVRSHTFRMKYFVLRNNVVSRVLRLLSCNDKYLQLSAVRFLRSCVGIKDEFYNRYLVKNNLLAPVFALFRENRGRDNLINSAVIELVE 619
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: I2CS98_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS98_NANGC)

HSP 1 Score: 189 bits (481), Expect = 1.190e-56
Identity = 100/205 (48.78%), Postives = 136/205 (66.34%), Query Frame = 1 
Query:   46 IWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNA-AKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLG 657
            I RLT+D D GV+V  +E L LCLD ESM+G A+RD FLGAFYDHY+ WL+EP      GGG+                   H+ ++++YCVR H YRM+YF++ N++V +V+RL     KFL+LAA+RFLRA V  KDDFYNR++ KNNLLAP  AL   N  +  NL+ SAI+EL +F+R EN++ L++++VER +     LG
Sbjct:    2 IHRLTSDTDTGVLVHLSECLLLCLDVESMEG-AERDRFLGAFYDHYLLWLLEPL-NAPLGGGKREDAESLAALAASRQ----HVVEIVTYCVRMHAYRMRYFIILNNLVHKVVRLTAVPQKFLRLAAIRFLRAIVNTKDDFYNRHLAKNNLLAPALALFQSNGLSSTNLLHSAIVELFDFIRGENLRVLVKHLVERHKETLEALG 200
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A4D9DCZ9_9STRA (SMK-1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 3.600e-56
Identity = 107/219 (48.86%), Postives = 147/219 (67.12%), Query Frame = 1 
Query:    4 AASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNA-AKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLG 657
            ++S  AS S+LFW+I RLT+D D GV+V  +E L LCLD ESM+G A+RD FLGAFYDHY+ WL+EP      GGG+                   H+ ++++YCVR H YRM+YF++ N++V +V+RL     KFL+LAA+RFLRA V  KDDFYNR++ KNNLLAP  AL   N  +  NL+ SAI+EL +F+R EN++ L++++VER +     LG
Sbjct:  706 SSSPAASYSLLFWMIHRLTSDTDTGVLVHLSECLLLCLDVESMEG-AERDRFLGAFYDHYLLWLLEPL-NAPLGGGKREDAESLAALAASRQ----HVVEIVTYCVRMHAYRMRYFIILNNLVHKVVRLTAAPQKFLRLAAIRFLRAIVNTKDDFYNRHLAKNNLLAPALALFQSNGLSSTNLLHSAIVELFDFIRGENLRVLVKHLVERHKETLEALG 918
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A7S3USX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USX4_HETAK)

HSP 1 Score: 169 bits (429), Expect = 2.330e-49
Identity = 84/128 (65.62%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:  286 LAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPV 669
            L H  DLL++CVR HTYRMKYFVLRN+IVARVLRL R RDKFL+LAAVRF+RACVGIKDDFYNRY+VKNNLLAPV  +      +D LI S I+E++EF+RSEN+K LIE I E++E  F  + +  V
Sbjct:   15 LGHATDLLAFCVRQHTYRMKYFVLRNNIVARVLRLLRYRDKFLKLAAVRFIRACVGIKDDFYNRYLVKNNLLAPVLDMFKDQKQQDTLINSTIIEMVEFIRSENIKILIENIHEKYEGAFHDVTYVTV 142
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: F0YCC8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCC8_AURAN)

HSP 1 Score: 181 bits (459), Expect = 1.190e-48
Identity = 106/239 (44.35%), Postives = 134/239 (56.07%), Query Frame = 1 
Query:   34 LFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGGGEXXXXXXXXXXXXXXXX-----CLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCR----DKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAK--------------------------------DNLITSAIMELLEFLRSENVKSLIEYIVE 627
            LFWV+  L  D D+  ++ A++  RL LD+E+MD + +RDAFL  FYD Y+ WLVEP +     GG+                       AH+C+LL+YCVR+H YRMKYFVLRNH+ ARV+ L  C     DK L LAA+RF+RACVG KDDFY RY+VKN  L PVF LL   AA                                 D+L+TSA+ EL EF+R ENVK L+ +IVE
Sbjct:  748 LFWVLRLLACDGDLATLMHASDAARLVLDSETMD-EPERDAFLALFYDKYLPWLVEPLYDVRVVGGDGVEVPLEDAAPGPGLRVANGAACAHVCELLAYCVRAHAYRMKYFVLRNHVAARVVALVECGGAYGDKPLVLAALRFVRACVGAKDDFYTRYLVKNGSLGPVFRLLGNAAAXXXXXXXXXXXGDATNDTVEPRPRNRPPRVVPGDSLVTSAVAELAEFVRVENVKGLVAHIVE 985
[Close]
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Match: A0A7S0HVM9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVM9_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 3.720e-45
Identity = 89/205 (43.41%), Postives = 123/205 (60.00%), Query Frame = 1 
Query:   88 QAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGDEGG---------GEXXXXXXXXXXXXXXXXCLAHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENVKSLIEYIVERFESEFGQLGHAPVLK 675
            Q AEVLR  LD E M+G+ ++D  L  FYD ++  L  P     E G          E                   H+C+LLS+CV+ H+YR+KYF+LRN+++A+VLRLAR RDK L LAA+RF R C+G+KD+FYNRYIVKN    PV A L +N  +DNL+ S+I+EL EF+R +N+K+L+ ++ + F      L H    K
Sbjct:  467 QVAEVLRSLLDPEGMEGR-EQDDLLNLFYDEFVHKLARPIAGRTEAGTAPMNGDAEAEPEVEEDVGGGGDSVLSTQQHVCELLSFCVQKHSYRIKYFILRNNVLAKVLRLARSRDKCLVLAALRFFRTCIGLKDEFYNRYIVKNKCFEPVLAQLLRNRTRDNLVHSSILELFEFIRRDNIKTLVAHLSDTFVDTLAGLNHVDTFK 670
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174161 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNG3_9STRA1.280e-150100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KKJ6_9PHAE9.510e-7954.72SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2RPQ1_9STRA2.440e-6347.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D4C1_9STRA1.260e-5846.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7FI53_ECTSI6.620e-5747.96SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
I2CS98_NANGC1.190e-5648.78Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9DCZ9_9STRA3.600e-5648.86SMK-1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S3USX4_HETAK2.330e-4965.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YCC8_AURAN1.190e-4844.35Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0HVM9_9EUKA3.720e-4543.41Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:200505..202705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174161|e_gw1.111.80.1
BRITEko00000,ko00001,ko01009,ko03400
KEGG Pathwayko04212,ko04922,map04212,map04922
KEGG koko:K17491
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
Preferred nameSMEK2
Descriptionsignal transduction involved in meiotic cell cycle checkpoint
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2175@1|root,KOG2175@2759|Eukaryota
Evalue1.08e-57
Seed ortholog2880.D7FI53
Hectar predicted targeting categorysignal peptide
TranscriptId174483
TrackFilteredModels1
ProteinId174161
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174161gene_11881Tribonema minus UTEX_B_3156 geneContig_111 200505..202705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174161Trimin1|174161|e_gw1.111.80.1Tribonema minus UTEX_B_3156 polypeptideContig_111 200505..202705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11881_4exon_11881_4Tribonema minus UTEX_B_3156 exonContig_111 200505..200622 -
exon_11881_3exon_11881_3Tribonema minus UTEX_B_3156 exonContig_111 201388..201557 -
exon_11881_2exon_11881_2Tribonema minus UTEX_B_3156 exonContig_111 202247..202419 -
exon_11881_1exon_11881_1Tribonema minus UTEX_B_3156 exonContig_111 202462..202705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11881CDS_11881Tribonema minus UTEX_B_3156 CDSContig_111 202462..202705 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11881 ID=mRNA_11881|Name=jgi.p|Trimin1|174161|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=705bp|location=Sequence derived from alignment at Contig_111:200505..202705- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGAGCGCGGAGGCGAGCCGCAGCGTGCTGTTCTGGGTGATCTG
GAGGCTCACGACGGACGCGGACGTGGGCGTCGTCGTGCAGGCCGCGGAGG
TCCTGCGCCTGTGCCTCGACACGGAGTCGATGGACGGGCAGGCGGACCGC
GACGCGTTCCTAGGCGCGTTCTACGACCACTACATCCAGTGGCTCGTGGA
GCCGTTCTGGCAGGGGGACGAGGGGGGCGGGGAGGGGGGGGAAGCGGCGC
CGGCGGCGCGCGCGACGGCGGCCGCCAAGGCGTGCCTCGCGCACCTGTGC
GACCTGCTGAGCTACTGCGTGCGCAGCCACACGTACCGGATGAAGTACTT
TGTGCTGCGGAACCACATCGTCGCGCGCGTGCTGCGCCTCGCGCGCTGCC
GCGATAAGTTCCTGCAGCTGGCGGCGGTGCGGTTCCTGCGCGCGTGCGTG
GGCATCAAAGACGACTTCTACAACCGCTACATCGTCAAGAACAACCTCCT
GGCGCCGGTCTTTGCGCTGCTGGCGCAGAATGCAGCCAAGGACAACCTCA
TCACCAGCGCTATTATGGAGCTGCTCGAGTTCCTCAGGTCTGAAAACGTC
AAGTCGCTTATTGAGTACATCGTGGAGCGATTTGAGTCGGAGTTTGGGCA
GCTGGGGCACGCGCCAGTGCTCAAGGTGAGCGCTGTCACAGATGTGCATA
CATGA
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protein sequence of jgi.p|Trimin1|174161

>Trimin1|174161|e_gw1.111.80.1 ID=Trimin1|174161|e_gw1.111.80.1|Name=jgi.p|Trimin1|174161|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=235bp
MAASAEASRSVLFWVIWRLTTDADVGVVVQAAEVLRLCLDTESMDGQADR
DAFLGAFYDHYIQWLVEPFWQGDEGGGEGGEAAPAARATAAAKACLAHLC
DLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACV
GIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLEFLRSENV
KSLIEYIVERFESEFGQLGHAPVLKVSAVTDVHT*
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mRNA from alignment at Contig_111:200505..202705-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11881 ID=mRNA_11881|Name=jgi.p|Trimin1|174161|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2201bp|location=Sequence derived from alignment at Contig_111:200505..202705- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGAGCGCGGAGGCGAGCCGCAGCGTGCTGTTCTGGGTGATCTG
GAGGCTCACGACGGACGCGGACGTGGGCGTCGTCGTGCAGGCCGCGGAGG
TCCTGCGCCTGTGCCTCGACACGGAGTCGATGGACGGGCAGGCGGACCGC
GACGCGTTCCTAGGCGCGTTCTACGACCACTACATCCAGTGGCTCGTGGA
GCCGTTCTGGCAGGGGGACGAGGGGGGCGGGGAGGGGGGGGAAGGTGGGA
GCGCGCGGCACGGCGGCGGCGGCGGCGCGGCGGCAGCGGCGCCGGCGGCG
CGCGCGACGGCGGCCGCCAAGGCGTGCCTCGCGCACCTGTGCGACCTGCT
GAGCTACTGCGTGCGCAGCCACACGTACCGGATGAAGTACTTTGTGCTGC
GGAACCACATCGTCGCGCGCGTGCTGCGCCTCGCGCGCTGCCGCGATAAG
TTCCTGCAGGTGCGTTGTGCGGGGTCTGACTCGGGCTTGGCCTGAAATGC
TACTCATAATTGACTGCGTCAGAAGTCCGCTTGTGTGTCAAGTGTAGAGT
AGATTAGAGAACTTCCACACTATTCTCTACGTAAAACCACCTGAGCAATC
CAGCGGTTGCAGGCATGCGTTAGGTGCCGTGTCCTACACCCTCCGCAGCA
CACTGTATCAATCGTTGAAGTGCACACCGCAGAGTACGCTGTCCAGGAGA
TGGCACCACGGTGGTGTTGGCGCAGCGCGTGGCGCAGCCGGCGCGTCGTG
CTGCGGGGCCGGTGCCTGCGGACGCGAGCGCGAGCGCGCGCAGCGAGCAT
GCGTTGCACGGTGACTCTCCTATGCACTGATCGCACTTATCGTGGACCAT
GTACGGGCTATGCATGCACACTAGGAGGCAGGTGGAGCAGGCTAACAGCC
CTTGGGCTGCAACCCAGTGCTGGTAAGCAGACAAGATACGCCCCTGTGGC
CAACTCGTTGAAGTGGAACGGGCCACCCCACTACTGCAGAAGTTCAGCTT
GCTTCCAAGCTCAAGTGCTTGCTTCTAGGTTACCCACTTGAGGTTTGCGT
GCGGCAGCGCGTGTACACACAAGGGCCACACCACACGTACTTCACCTGGC
GACTCTCGTGCTTCAACCGGCGACTCTCCCGCTCGCGCGCTGCTGCAGCT
GGCGGCGGTGCGGTTCCTGCGCGCGTGCGTGGGCATCAAAGACGACTTCT
ACAACCGCTACATCGTCAAGAACAACCTCCTGGCGCCGGTCTTTGCGCTG
CTGGCGCAGAATGCAGCCAAGGACAACCTCATCACCAGCGCTATTATGGA
GCTGCTCGAGTTCCTCAGGTGCGTAGTTCACGTGTGTACACGGACTCATC
AGCAGATGATAAGCAGCCGTGCCCGTGATTGAGCACCATGGCCTTGGCAA
ATCGTTTGGCACAAGAGTGAAATGGCAGACTTGAGCATTTGTGCGGTGCC
TACTGAAGTATCTCTCATACCTTGGAAGCAAGTGACGAACACCATACTTG
GAGCTCAGGTGCGCGCACATGCGGAGGCAGGCGGCGCGCAGTGGAATGCG
CAGGTGATTGGGGAGGAGCGCGCGACACGCATCAGCGGGGCCCATTGCTA
CCATAGGTGCTAGGCACGTGCCAATGGGACTCGGCACATGGCTGCATCTC
AACGCTCATGCCTGCTCTGAGTGCAAATCAGTTGCATCTCGATTGCAGCT
GCTTGGCCTCTCCAGTGGCACCCCAGATCTGCATGCGCAGATGTTGTGCT
TGGGGTATGCGAAGCCACACTTGCAATTCGGGTGTTGTGCTTGCAACCGT
GTGCTCATTAGTGGGCTCGCAAACTGTTGCGGCGCGAGCGTATTCGGCAT
TTGCATGTGCGTTCTTGCGGCATGAGTGACGACGCATGCTCAGCGTGAAA
CTGCGTGCGCCTGTTGTCAGGGGGGCTCTTGTGTACATCCTCTCTTACAA
GTCGGGTCAGTCAGGGTGAGCCCGCGCAGCGCACACTCGGATACACTCCT
GCCTCTCGCAGGGCGCACTCACGCCTGACCCTAAGCTTAACCCTTGTTGT
CACTTCCCTGTGTATCAACTGCTGTTGTTGCAGGTCTGAAAACGTCAAGT
CGCTTATTGAGTACATCGTGGAGCGATTTGAGTCGGAGTTTGGGCAGCTG
GGGCACGCGCCAGTGCTCAAGGTGAGCGCTGTCACAGATGTGCATACATG
A
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Coding sequence (CDS) from alignment at Contig_111:200505..202705-

>mRNA_11881 ID=mRNA_11881|Name=jgi.p|Trimin1|174161|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=705bp|location=Sequence derived from alignment at Contig_111:200505..202705- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGAGCGCGGAGGCGAGCCGCAGCGTGCTGTTCTGGGTGATCTG
GAGGCTCACGACGGACGCGGACGTGGGCGTCGTCGTGCAGGCCGCGGAGG
TCCTGCGCCTGTGCCTCGACACGGAGTCGATGGACGGGCAGGCGGACCGC
GACGCGTTCCTAGGCGCGTTCTACGACCACTACATCCAGTGGCTCGTGGA
GCCGTTCTGGCAGGGGGACGAGGGGGGCGGGGAGGGGGGGGAAGCGGCGC
CGGCGGCGCGCGCGACGGCGGCCGCCAAGGCGTGCCTCGCGCACCTGTGC
GACCTGCTGAGCTACTGCGTGCGCAGCCACACGTACCGGATGAAGTACTT
TGTGCTGCGGAACCACATCGTCGCGCGCGTGCTGCGCCTCGCGCGCTGCC
GCGATAAGTTCCTGCAGCTGGCGGCGGTGCGGTTCCTGCGCGCGTGCGTG
GGCATCAAAGACGACTTCTACAACCGCTACATCGTCAAGAACAACCTCCT
GGCGCCGGTCTTTGCGCTGCTGGCGCAGAATGCAGCCAAGGACAACCTCA
TCACCAGCGCTATTATGGAGCTGCTCGAGTTCCTCAGGTCTGAAAACGTC
AAGTCGCTTATTGAGTACATCGTGGAGCGATTTGAGTCGGAGTTTGGGCA
GCTGGGGCACGCGCCAGTGCTCAAGGTGAGCGCTGTCACAGATGTGCATA
CATGA
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