mRNA_11874 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352175
Unique NamemRNA_11874
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352175 vs. uniprot
Match: A0A835ZN70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN70_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 1.250e-153
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 
Query:    1 MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTPFVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALKRAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEWAAAEAKAQGILEARRGAXXXXXXXXXXXXXPVAEAGAADS 747
            MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTPFVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALKRAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEWAAAEAKAQGILEARRGAXXXXXXXXXXXXXPVAEAGAADS
Sbjct:    1 MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTPFVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALKRAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEWAAAEAKAQGILEARRGAXXXXXXXXXXXXXPVAEAGAADS 249
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BLAST of jgi.p|Trimin1|352175 vs. uniprot
Match: D7FJ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ44_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-10
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  415 RLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEW 627
            RLGII   VPRERR+A+LQRLF+L QAP +E   +V  V+E  + +    + D NLL TW  +RE RA  W
Sbjct:  238 RLGIIRKTVPRERRMAVLQRLFHLAQAPADEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERAPAW 308
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BLAST of jgi.p|Trimin1|352175 vs. uniprot
Match: A0A6H5KGI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.340e-10
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:  415 RLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEW 627
            RLGII   VPRERR+A+LQRLF+L QAP EE   +V  V+     +    + D NLL TW  +RE RA  W
Sbjct:  176 RLGIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTHVKGLKSNSSPAEIRDVNLLKTWQGVREERATAW 246
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352175 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZN70_9STRA1.250e-153100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJ44_ECTSI1.600e-1050.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGI2_9PHAE7.340e-1050.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:133282..135074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352175|estExt_Genemark1.C_Ctg_1110018
Hectar predicted targeting categoryother localisation
TranscriptId352497
TrackFilteredModels1
ProteinId352175
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352175gene_11874Tribonema minus UTEX_B_3156 geneContig_111 133282..135074 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11874_1exon_11874_1Tribonema minus UTEX_B_3156 exonContig_111 133282..133471 +
exon_11874_2exon_11874_2Tribonema minus UTEX_B_3156 exonContig_111 133882..134184 +
exon_11874_3exon_11874_3Tribonema minus UTEX_B_3156 exonContig_111 134818..135074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11874CDS_11874Tribonema minus UTEX_B_3156 CDSContig_111 133282..133471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352175Trimin1|352175|estExt_Genemark1.C_Ctg_1110018Tribonema minus UTEX_B_3156 polypeptideContig_111 133282..135074 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11874 ID=mRNA_11874|Name=jgi.p|Trimin1|352175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_111:133282..135074+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATGCGGATCCGGTCGCCGAAGCTACGTTGGCTGCTGACGCCAC
TGCTGAGACCAACGTTAAGCCAAAGCGGTGCGTTCTGTCAGACGAGGAGA
GGGCAGTAGTCGACTCGTGCAGGGTCATCCTGGGGGATGTCTTCACGCCA
TTTGTCTCCCTGGAATCTGCTGTAGCCGAGCTGGAGTCAGATCCCGCGCC
GCAAGCGGAGATCATGTACTGGAAGTGCCTCGCAGACACGCTCGTCGTCT
ACTACAGCCAGACGCTCATGCTGCCGCAGGCCATGGCGGCAGCGCTCAAG
CGCGCGGAGGCGGGGGGCGGGGGCACGGCGGGGGATGATGCGGGCGGGGA
TGTGCTGGGGGGCGTAGAGGGGGACCTGCAGCGCCTGAAGGAGTTTGACG
TGACGGACGAGCAGAGGCTAGGGATCATCATGAACGCCGTGCCGCGGGAG
CGCCGCGTGGCGCTGCTGCAGCGGCTGTTTTACCTAACGCAAGCGCCGCC
GGAGGAGTTCGCACCCGTCGTGCAGCTGGTGCGCGAGCAAGGCGACGCTG
CGGGGCGCGAGGCCGTAGTTGATGCAAACCTGCTGTCGACGTGGTCGGCG
ATTCGCGAGGCGCGCGCAGCAGAGTGGGCCGCCGCCGAGGCCAAGGCGCA
AGGCATACTTGAGGCGCGGCGGGGGGCGGAGAGAGGGGGCGGCGAGGGGG
GGGAAGGGGGGGGGGAACCGGTGGCCGAGGCTGGCGCCGCTGATAGTTAA
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protein sequence of jgi.p|Trimin1|352175

>Trimin1|352175|estExt_Genemark1.C_Ctg_1110018 ID=Trimin1|352175|estExt_Genemark1.C_Ctg_1110018|Name=jgi.p|Trimin1|352175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTP
FVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALK
RAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRE
RRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSA
IREARAAEWAAAEAKAQGILEARRGAERGGGEGGEGGGEPVAEAGAADS*
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mRNA from alignment at Contig_111:133282..135074+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11874 ID=mRNA_11874|Name=jgi.p|Trimin1|352175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1793bp|location=Sequence derived from alignment at Contig_111:133282..135074+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATGCGGATCCGGTCGCCGAAGCTACGTTGGCTGCTGACGCCAC
TGCTGAGACCAACGTTAAGCCAAAGCGGTGCGTTCTGTCAGACGAGGAGA
GGGCAGTAGTCGACTCGTGCAGGGTCATCCTGGGGGATGTCTTCACGCCA
TTTGTCTCCCTGGAATCTGCTGTAGCCGAGCTGGAGTCAGGTACGGACGC
TCTGGAGTATTGATGGATGCTATGTGCATCGAAACCTTTTGATGGTGATC
ATCTGCAGGCTATTCACAATTTTTTCGCCTCCAAGTCAACTTCAAACACA
GACGCGAGGCGCTGGAAGGTCTGCGACGCATCCTTTCTGCCTGGCCTCCA
GCACCGTAAATCACTTCTGCGCAGTGCACACACTCCCTGTCAATTTGTGC
TCGACACTCATCACCCAACCTCTGCAACATGAGCACATGTGGAGAGGGTC
ACACTTGGTAGCGCCAACGGAGCGCGCCCTGGCTGCCAGCAGTGCTGCTC
ACTGCCTCACACGTGCAACCGAGCGCGCGCTACTGCATCACCCGCCCGCC
GCCACTGTTTCAGCACGCTGCTGCGCCCTTCGCACTGCCCCCGCCGCCAG
ATCCCGCGCCGCAAGCGGAGATCATGTACTGGAAGTGCCTCGCAGACACG
CTCGTCGTCTACTACAGCCAGACGCTCATGCTGCCGCAGGCCATGGCGGC
AGCGCTCAAGCGCGCGGAGGCGGGGGGCGGGGGCACGGCGGGGGATGATG
CGGGCGGGGATGTGCTGGGGGGCGTAGAGGGGGACCTGCAGCGCCTGAAG
GAGTTTGACGTGACGGACGAGCAGAGGCTAGGGATCATCATGAACGCCGT
GCCGCGGGAGCGCCGCGTGGCGCTGCTGCAGCGGCTGTTTTACCTAACGC
AAGGTATGTGAGAGCTGCTGCAGTGGCTATGTGATGATACTTCTAGTATC
ACACTTGAGAGTCGTCATCTTGAAGTTGGTTACCTCACGCAATACAGGCG
CCACCAGGGAGTAGGGTGTTCCACAAGTGGTGGTTGTGGTCAATGGAAAT
GTATCCAGGACTTTCAGTTCGAGACAGCTTTGAGGAAGGCCGCTGACTGT
GATGCTGGCTTCAAGACTGGGTCAGCGTGGCCTTGGCAGGAGTGCAGTGG
CTGTCGCGGGGAGGCATGAGCCGACCTCATTGTGGTCAAGGAGCGGATGC
TAGTCGTGGCTACCGAGGCTGCCATAGTCTCAGAGAGTGGACAGTAGCCG
TGCTGCAGCCGCAACCCTCCGGCGACGACTTGCAGCCCGTCAACAGCATC
GCAGCATTGACGGCCGCTGCGTCTGCTATGGCCGCCCTCATCTTTGACGC
AGTGAGAATTGGCCGTCTCCTCCCCCTCCCCCCCCCCCCCCCTTGCTCTC
ACTCTCCTCACCCTCTCTCTCTCTTCTGTCTCTCTCCCCACCTCCCTCTC
GCCCGCCCTCTCTCTCTCTTTCTGGCTCGCTCTCCACCCCCCCCCCCCCT
CTTTCTTTACCCCCCCCCCCCTCTCCCTCTCATCAGCGCCGCCGGAGGAG
TTCGCACCCGTCGTGCAGCTGGTGCGCGAGCAAGGCGACGCTGCGGGGCG
CGAGGCCGTAGTTGATGCAAACCTGCTGTCGACGTGGTCGGCGATTCGCG
AGGCGCGCGCAGCAGAGTGGGCCGCCGCCGAGGCCAAGGCGCAAGGCATA
CTTGAGGCGCGGCGGGGGGCGGAGAGAGGGGGCGGCGAGGGGGGGGAAGG
GGGGGGGGAACCGGTGGCCGAGGCTGGCGCCGCTGATAGTTAA
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Coding sequence (CDS) from alignment at Contig_111:133282..135074+

>mRNA_11874 ID=mRNA_11874|Name=jgi.p|Trimin1|352175|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_111:133282..135074+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATGCGGATCCGGTCGCCGAAGCTACGTTGGCTGCTGACGCCAC
TGCTGAGACCAACGTTAAGCCAAAGCGGTGCGTTCTGTCAGACGAGGAGA
GGGCAGTAGTCGACTCGTGCAGGGTCATCCTGGGGGATGTCTTCACGCCA
TTTGTCTCCCTGGAATCTGCTGTAGCCGAGCTGGAGTCAGATCCCGCGCC
GCAAGCGGAGATCATGTACTGGAAGTGCCTCGCAGACACGCTCGTCGTCT
ACTACAGCCAGACGCTCATGCTGCCGCAGGCCATGGCGGCAGCGCTCAAG
CGCGCGGAGGCGGGGGGCGGGGGCACGGCGGGGGATGATGCGGGCGGGGA
TGTGCTGGGGGGCGTAGAGGGGGACCTGCAGCGCCTGAAGGAGTTTGACG
TGACGGACGAGCAGAGGCTAGGGATCATCATGAACGCCGTGCCGCGGGAG
CGCCGCGTGGCGCTGCTGCAGCGGCTGTTTTACCTAACGCAAGCGCCGCC
GGAGGAGTTCGCACCCGTCGTGCAGCTGGTGCGCGAGCAAGGCGACGCTG
CGGGGCGCGAGGCCGTAGTTGATGCAAACCTGCTGTCGACGTGGTCGGCG
ATTCGCGAGGCGCGCGCAGCAGAGTGGGCCGCCGCCGAGGCCAAGGCGCA
AGGCATACTTGAGGCGCGGCGGGGGGCGGAGAGAGGGGGCGGCGAGGGGG
GGGAAGGGGGGGGGGAACCGGTGGCCGAGGCTGGCGCCGCTGATAGTTAA
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