mRNA_1185 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136536
Unique NamemRNA_1185
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: A0A835ZES7_9STRA (EDR2_C domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES7_9STRA)

HSP 1 Score: 207 bits (527), Expect = 8.020e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL
Sbjct:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 104          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 7.060e-39
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            DDFRN+RFKLIPS+V GPF+VR AVGNKPALLGRK++QRY+RG  YVETDVDV SS +A  IVS+CRG +  L+V+LGI LEGR   ELPE  +GV+RL  +D+
Sbjct:  521 DDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDI 624          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: A0A7S2CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMY1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.280e-37
Identity = 65/104 (62.50%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            +  RN+RFKLIP+I EGPFLV+ AVG KPALLG+KLTQRY+RG HYVETDV V SS++A  +V +CRG    L+V++GIVLEGR+ AELPE+ +GV R  ++D+
Sbjct:  371 EHLRNQRFKLIPAITEGPFLVKQAVGAKPALLGQKLTQRYFRGEHYVETDVHVGSSAIANQVVGLCRGYCKALTVEIGIVLEGRSEAELPEKLIGVGRFKKIDI 474          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: A0A7S2WM21_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM21_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.070e-35
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            D FRN+RFKLIP IV+GPFLVR AVG KPALLG+KLTQRYYRG +Y+ETDV V S++VA HI  + R  S  ++V++ I +EGR  AELPE+ +GVV+    D+
Sbjct:  272 DHFRNQRFKLIPRIVDGPFLVRNAVGAKPALLGQKLTQRYYRGKNYIETDVHVGSNAVANHITGISRTYSKSVTVEIAITIEGRQEAELPEKLVGVVKFTHTDI 375          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: A0A7S3XTA9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTA9_HETAK)

HSP 1 Score: 123 bits (309), Expect = 6.770e-34
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            D F+N RFKL+PSIVEGP++ + AV NKPA+LG+K+TQRY+R  HY+E D+D+ SS VA  IV +CRG +  L VD+GI LEG+  AELPE  L   R+ R+DL
Sbjct:   38 DAFQNLRFKLVPSIVEGPWICQRAVKNKPAILGQKITQRYFRTEHYLEVDLDIGSSVVADKIVGLCRGYAVNLVVDIGITLEGQTGAELPEVLLAATRMARVDL 141          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: W7U3Y4_9STRA (PX domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3Y4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.940e-33
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 DFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRAR-AELPERCLGVVRLNRLDL 312
            DF+N+RFKLIPSIV+GP +++ AVGNKP +LG+KLTQRY+RG  YVE DVD+ASS++A+ IVS+CRG +  L V++GI+L+G    AELPE+ LG + +  LD+
Sbjct:  708 DFKNKRFKLIPSIVDGPSMIKWAVGNKPTILGQKLTQRYFRGEDYVEVDVDIASSALASQIVSLCRGYAKYLQVEMGILLQGEDETAELPEKLLGTIGIRNLDI 811          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: T0RWT2_SAPDV (EDR2_C domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RWT2_SAPDV)

HSP 1 Score: 122 bits (306), Expect = 1.130e-31
Identity = 56/102 (54.90%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    7 FRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            F++ RFKL+P+IV+GP+L++ AV  KPA+ G KLTQRY+ G +YVE D+D+ SS++A++IVS+CRG +  L VDL + L+G + AELPER  G VR + LDL
Sbjct:  213 FQDARFKLVPTIVDGPWLIKAAVPQKPAITGSKLTQRYFVGRNYVEVDMDIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSEAELPERIFGSVRFSHLDL 314          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: A0A067BR04_SAPPC (EDR2_C domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR04_SAPPC)

HSP 1 Score: 120 bits (302), Expect = 4.150e-31
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    7 FRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            F++ RFKL+P+IV+GP+L++ AV  KPA+ G KLTQRY+ G++YVE D+D+ SS++A++IVS+CRG +  L VDL + L+G +  ELPER  G VR + LDL
Sbjct:  210 FQDARFKLVPTIVDGPWLIKAAVPQKPAITGTKLTQRYFVGSNYVEVDMDIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSDVELPERIFGSVRFSHLDL 311          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: M4B646_HYAAE (EDR2_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B646_HYAAE)

HSP 1 Score: 120 bits (302), Expect = 8.240e-31
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            D+FRNERFKLIP IVEG F+VR AVG+ PAL+G+KL Q  +RG  Y E DVD+ASS+VA  +V +  G +  L +D+G VLEG++  ELPER  G VRL  LDL
Sbjct:  250 DEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPTFRGKQYFELDVDIASSAVANRVVGLVSGYTKKLVIDMGFVLEGQSPDELPERLFGSVRLVHLDL 353          
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Match: A0A662YG75_9STRA (EDR2_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG75_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.530e-30
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 312
            D+FRNERFKLIP IVEG F+VR AVG+ PAL+G+KL Q Y+RG  Y E DVD+ SS+VA  +V +  G +  L +D+G VLEG++  ELPER +G VRL  +DL
Sbjct:  542 DEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFRGTQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQSPDELPERLMGSVRLVHIDL 645          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136536 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZES7_9STRA8.020e-68100.00EDR2_C domain-containing protein (Fragment) n=1 Ta... [more]
D7G1Z5_ECTSI7.060e-3967.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CMY1_9STRA3.280e-3762.50Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WM21_9STRA5.070e-3560.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XTA9_HETAK6.770e-3457.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7U3Y4_9STRA4.940e-3358.65PX domain-containing protein n=2 Tax=Monodopsidace... [more]
T0RWT2_SAPDV1.130e-3154.90EDR2_C domain-containing protein n=1 Tax=Saprolegn... [more]
A0A067BR04_SAPPC4.150e-3153.92EDR2_C domain-containing protein n=2 Tax=Saprolegn... [more]
M4B646_HYAAE8.240e-3158.65EDR2_C domain-containing protein n=1 Tax=Hyalopero... [more]
A0A662YG75_9STRA1.530e-3057.69EDR2_C domain-containing protein n=2 Tax=Nothophyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:2014457..2015458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136536|gw1.1.60.1
DescriptionProtein of unknown function (DUF1336)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KK0@1|root,2QT1F@2759|Eukaryota
Evalue1.16e-39
Seed ortholog2880.D7G1Z5
Hectar predicted targeting categoryother localisation
TranscriptId136858
TrackFilteredModels1
ProteinId136536
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136536gene_1185Tribonema minus UTEX_B_3156 geneContig_1 2014457..2015458 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1185_1exon_1185_1Tribonema minus UTEX_B_3156 exonContig_1 2014457..2014540 +
exon_1185_2exon_1185_2Tribonema minus UTEX_B_3156 exonContig_1 2015231..2015458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1185CDS_1185Tribonema minus UTEX_B_3156 CDSContig_1 2014457..2014540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136536Trimin1|136536|gw1.1.60.1Tribonema minus UTEX_B_3156 polypeptideContig_1 2014457..2015458 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1185 ID=mRNA_1185|Name=jgi.p|Trimin1|136536|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_1:2014457..2015458+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGACTTCCGCAACGAGCGCTTCAAGCTCATCCCCAGCATCGTCGAGGG
GCCCTTCCTCGTCAGAGGCGCGGTGGGCAACAAGCCCGCGCTCCTCGGCC
GCAAGCTCACGCAGCGCTACTACCGCGGCGCGCACTACGTCGAGACGGAC
GTCGACGTCGCGTCGTCCTCCGTCGCGGCGCACATCGTCTCTATGTGCCG
CGGCGCGTCTAACGGACTCTCCGTGGACCTAGGCATCGTCCTCGAGGGGC
GCGCGCGCGCGGAGCTGCCGGAGCGCTGCCTCGGCGTGGTGAGGCTCAAC
CGCCTCGACCTC
back to top

protein sequence of jgi.p|Trimin1|136536

>Trimin1|136536|gw1.1.60.1 ID=Trimin1|136536|gw1.1.60.1|Name=jgi.p|Trimin1|136536|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETD
VDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLN
RLDL
back to top

mRNA from alignment at Contig_1:2014457..2015458+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1185 ID=mRNA_1185|Name=jgi.p|Trimin1|136536|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1002bp|location=Sequence derived from alignment at Contig_1:2014457..2015458+ (Tribonema minus UTEX_B_3156 )
GATGACTTCCGCAACGAGCGCTTCAAGCTCATCCCCAGCATCGTCGAGGG GCCCTTCCTCGTCAGAGGCGCGGTGGGCAACAAGGTGAGTGCGCGGCGCG ATTTGACCTTCCGCTCAGCTTGCTTGCCGCCCATGCCATCGCAGCCAGTG CTGTTTGTGTCTCTCGGCCGCTAATTTCTGCGGCAAATGCCGCCTGCGCG CGGCTGCGAGGCGCGGTTCCGGCGCCGCACGCGAATCGCGGTCGCTATTG CTGCGCGTGCGTTCCCCACAAACTGTGTGCACCGCGCTAAGCGCTTGATG CAACTTGTCCCTCTCCGGCGCGCGCGGCAGTCCACATCGCTGCCGCGCTC CGCTGATGCTTCCGATTACAGCGGCGAGCCGCGCGCCTAGTCAGGCCACC AGTTGCGCCGCCCCCTCCCCCAACGTGGGGCGCGCGCTCAGGGTCAGGGT TAGGGTTGGCGCCTGTCGTGTGTGTGGCGCTGCACAGCATCCTTGTCCAA CCCTCGGCAGCCCGCCCTTCCCCTCTGCGTGGAAGAAGCACTGTGGTGCT CAGACTGGCACCTGCGGCGCAGGGCGACTAGACACGACGTCGTGGCCAAC CGCCCTTGACCGTTCCCCAAGGTCTCTGGAGTGAACGCTCTGCATTACCA GTTCCTGCGCTGCTGCAGCTTGAATCTGCCCCCCCCCCCCCCCCCCCGCT CTCCCTTGTGCCATCATTCTCTTGAACCGCGCGGCTTACATCGCCCCCTT CCCGCCCCCCCCCGCGCCCCGCAGCCCGCGCTCCTCGGCCGCAAGCTCAC GCAGCGCTACTACCGCGGCGCGCACTACGTCGAGACGGACGTCGACGTCG CGTCGTCCTCCGTCGCGGCGCACATCGTCTCTATGTGCCGCGGCGCGTCT AACGGACTCTCCGTGGACCTAGGCATCGTCCTCGAGGGGCGCGCGCGCGC GGAGCTGCCGGAGCGCTGCCTCGGCGTGGTGAGGCTCAACCGCCTCGACC TC
back to top

Coding sequence (CDS) from alignment at Contig_1:2014457..2015458+

>mRNA_1185 ID=mRNA_1185|Name=jgi.p|Trimin1|136536|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_1:2014457..2015458+ (Tribonema minus UTEX_B_3156 )
GATGACTTCCGCAACGAGCGCTTCAAGCTCATCCCCAGCATCGTCGAGGG
GCCCTTCCTCGTCAGAGGCGCGGTGGGCAACAAGCCCGCGCTCCTCGGCC
GCAAGCTCACGCAGCGCTACTACCGCGGCGCGCACTACGTCGAGACGGAC
GTCGACGTCGCGTCGTCCTCCGTCGCGGCGCACATCGTCTCTATGTGCCG
CGGCGCGTCTAACGGACTCTCCGTGGACCTAGGCATCGTCCTCGAGGGGC
GCGCGCGCGCGGAGCTGCCGGAGCGCTGCCTCGGCGTGGTGAGGCTCAAC
CGCCTCGACCTC
back to top