mRNA_11852 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173448
Unique NamemRNA_11852
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|173448 vs. uniprot
Match: A0A835ZHY7_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY7_9STRA)

HSP 1 Score: 477 bits (1227), Expect = 2.640e-170
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 
Query:    1 MLSSLTLFEGQSAAKRRLLEVQQWIEGQSKDKTAALSSKMRARNALLLTSVIAIQRALRGHQARLRVHQYMQEIAAASCIQRMWRGHKGRVVAQDLFWSRVQVAPTQYSLALMMQRSRRVQTISGWTEYFDTDVNCFWYMDNATRRSTWDAPEAFREALTCNWDPWPHPYRGAGEEPCRQAFKTHEEFQTHRATAHRWQCLACEAINAALSFPRCALCGSGSAMNARDNITAAD 702
            MLSSLTLFEGQSAAKRRLLEVQQWIEGQSKDKTAALSSKMRARNALLLTSVIAIQRALRGHQARLRVHQYMQEIAAASCIQRMWRGHKGRVVAQDLFWSRVQVAPTQYSLALMMQRSRRVQTISGWTEYFDTDVNCFWYMDNATRRSTWDAPEAFREALTCNWDPWPHPYRGAGEEPCRQAFKTHEEFQTHRATAHRWQCLACEAINAALSFPRCALCGSGSAMNARDNITAAD
Sbjct:    1 MLSSLTLFEGQSAAKRRLLEVQQWIEGQSKDKTAALSSKMRARNALLLTSVIAIQRALRGHQARLRVHQYMQEIAAASCIQRMWRGHKGRVVAQDLFWSRVQVAPTQYSLALMMQRSRRVQTISGWTEYFDTDVNCFWYMDNATRRSTWDAPEAFREALTCNWDPWPHPYRGAGEEPCRQAFKTHEEFQTHRATAHRWQCLACEAINAALSFPRCALCGSGSAMNARDNITAAD 234
[Close]
BLAST of jgi.p|Trimin1|173448 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.900e-39
Identity = 82/230 (35.65%), Postives = 119/230 (51.74%), Query Frame = 1 
Query:   40 AKRRLLEVQQWIEGQSKDKTAALSSKMRARNALLLTSVIAIQRALRGHQARLRVHQYMQEIAAASCIQRMWRGHKGRVVAQDLF--------------------------WSRVQVAPTQYSLALMMQRSRRVQTISGWTEYFDTDVNCFWYMDNATRRSTWDAPEAFREALTCNWDPWPHPYRGAGEEPCRQAFKTHEEFQTHRATAHRWQCLACEAINAALSFPRCAL 651
            A RRL + ++W++G S       S+KM                   G+   L+  +  +   AA+ +Q  +RG +GR +A D                            W ++QV  T YSL L+ QRSR+VQ + GW EYFD D + FWY++N+T+ STW+AP+ F +++TC WDPWP PY    ++PCR+ F    EFQ HR  AH WQC +    N+ ++FPRC L
Sbjct:   14 ASRRLQQAREWVDGCS-------STKM-------------------GYWEDLKAAEADRREQAATAMQAAYRGWEGRQIAADRRAXXXXXXXXXXXXXXXXXXXXXTEERWKQLQVVRTSYSLKLLTQRSRQVQEVGGWVEYFDPDTSAFWYLENSTKHSTWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCRKVFTNMAEFQAHRLNAHPWQCASWGQRNSGMTFPRCEL 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173448 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZHY7_9STRA2.640e-170100.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
D7FWY6_ECTSI1.900e-3935.65MORN repeat variant family protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:520963..522128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173448|e_gw1.102.11.1
KEGG TC1.A.33.1
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
KEGG ModuleM00353,M00355
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG koko:K03283
DescriptionMORN repeat-containing protein
COG categoryDZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4642@1|root,COG5253@1|root,KOG0229@2759|Eukaryota,KOG0231@2759|Eukaryota
Evalue3.12e-40
Seed ortholog2880.D7FWY6
Hectar predicted targeting categoryother localisation
TranscriptId173770
TrackFilteredModels1
ProteinId173448
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173448gene_11852Tribonema minus UTEX_B_3156 geneContig_102 520963..522128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173448Trimin1|173448|e_gw1.102.11.1Tribonema minus UTEX_B_3156 polypeptideContig_102 520963..522128 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11852_2exon_11852_2Tribonema minus UTEX_B_3156 exonContig_102 520963..521097 -
exon_11852_1exon_11852_1Tribonema minus UTEX_B_3156 exonContig_102 521562..522128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11852CDS_11852Tribonema minus UTEX_B_3156 CDSContig_102 521562..522128 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11852 ID=mRNA_11852|Name=jgi.p|Trimin1|173448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=702bp|location=Sequence derived from alignment at Contig_102:520963..522128- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCTTCCCTGACGCTGTTCGAGGGCCAGAGTGCCGCGAAGCGCAG
GTTGCTAGAGGTGCAGCAATGGATAGAAGGGCAAAGCAAGGACAAGACGG
CCGCCTTGTCGTCCAAGATGAGAGCTCGCAATGCCTTGCTTCTCACCTCA
GTGATAGCAATACAGCGAGCGCTGAGAGGACACCAGGCGAGGCTGCGAGT
GCACCAGTACATGCAGGAGATCGCCGCCGCCTCGTGCATCCAACGCATGT
GGCGCGGCCACAAAGGCAGAGTCGTCGCTCAAGATCTGTTCTGGAGCAGG
GTGCAGGTGGCGCCAACGCAGTACTCCTTGGCGCTGATGATGCAGCGGTC
TCGAAGGGTGCAGACGATCAGCGGCTGGACAGAATACTTTGACACCGACG
TCAACTGCTTCTGGTACATGGACAATGCCACACGTCGCAGCACGTGGGAT
GCCCCGGAGGCCTTCAGGGAGGCGCTCACATGCAATTGGGACCCCTGGCC
GCACCCTTATAGGGGAGCTGGAGAGGAGCCATGTCGGCAGGCCTTCAAGA
CGCACGAGGAATTTCAGACCCACCGCGCGACGGCCCACCGCTGGCAGTGC
CTGGCGTGCGAGGCGATCAACGCGGCGCTGAGCTTCCCGCGCTGCGCGCT
GTGCGGCAGCGGCAGCGCCATGAACGCCCGCGACAACATCACGGCAGCAG
AT
back to top

protein sequence of jgi.p|Trimin1|173448

>Trimin1|173448|e_gw1.102.11.1 ID=Trimin1|173448|e_gw1.102.11.1|Name=jgi.p|Trimin1|173448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MLSSLTLFEGQSAAKRRLLEVQQWIEGQSKDKTAALSSKMRARNALLLTS
VIAIQRALRGHQARLRVHQYMQEIAAASCIQRMWRGHKGRVVAQDLFWSR
VQVAPTQYSLALMMQRSRRVQTISGWTEYFDTDVNCFWYMDNATRRSTWD
APEAFREALTCNWDPWPHPYRGAGEEPCRQAFKTHEEFQTHRATAHRWQC
LACEAINAALSFPRCALCGSGSAMNARDNITAAD
back to top

mRNA from alignment at Contig_102:520963..522128-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11852 ID=mRNA_11852|Name=jgi.p|Trimin1|173448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1166bp|location=Sequence derived from alignment at Contig_102:520963..522128- (Tribonema minus UTEX_B_3156 )
ATGCTGTCTTCCCTGACGCTGTTCGAGGGCCAGAGTGCCGCGAAGCGCAG
GTTGCTAGAGGTGCAGCAATGGATAGAAGGGCAAAGCAAGGACAAGACGG
CCGCCTTGTCGTCCAAGATGAGAGCTCGCAATGCCTTGCTTCTCACCTCA
GTGATAGCAATACAGCGAGCGCTGAGAGGACACCAGGCGAGGCTGCGAGT
GCACCAGTACATGCAGGAGATCGCCGCCGCCTCGTGCATCCAACGCATGT
GGCGCGGCCACAAAGGCAGAGTCGTCGCTCAAGATCTGTTCTGGAGCAGG
GTGCAGGTGGCGCCAACGCAGTACTCCTTGGCGCTGATGATGCAGCGGTC
TCGAAGGGTGCAGACGATCAGCGGCTGGACAGAATACTTTGACACCGACG
TCAACTGCTTCTGGTACATGGACAATGCCACACGTCGCAGCACGTGGGAT
GCCCCGGAGGCCTTCAGGGAGGCGCTCACATGCAATTGGGACCCCTGGCC
GCACCCTTATAGGGGAGCTGGAGAGGAGCCATGTCGGCAGGCCTTCAAGA
CGCACGAGGAATTTCAGGTGCGTGCATGCAGTCTCATGCTCTCCATTGTA
CTGCATACTCTTTGGTGCGGTCGCATTTGAACGCCAGCTGGCATGCACAG
CTGCCTTGCACGGTTTTGACCCCTGAAGTTGCGCAATTAAAGTTACGCTC
ACGTGCCTGTGCCAACTCACGGTTGTGATGTCTTGCCTGATTAGTGTGCA
GCCAGCCTGCGCCTGCTGCGTGCAAACTTGAGCCCGCATGCAGCGCGCTG
ATTAGCGGGAGCAAGCCATGCAGCGGCCAACCAGACGATGTCTACTATGT
CTCACCAAGAAGATGACTTGAGGAAAAAAAACTTGAAGATGAACTTGAAC
GTGAACTTGAAGGTGAACTTGACGTATCTCACCAAGAAGATGAGTTGAGG
AAGGTGTACTTGAAGGTGAATTTGACGTCACGCAACCGTAGCCCCCACTA
TCGTCGCCGTTGATCTTGATTGCACTCGCAGACCCACCGCGCGACGGCCC
ACCGCTGGCAGTGCCTGGCGTGCGAGGCGATCAACGCGGCGCTGAGCTTC
CCGCGCTGCGCGCTGTGCGGCAGCGGCAGCGCCATGAACGCCCGCGACAA
CATCACGGCAGCAGAT
back to top

Coding sequence (CDS) from alignment at Contig_102:520963..522128-

>mRNA_11852 ID=mRNA_11852|Name=jgi.p|Trimin1|173448|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_102:520963..522128- (Tribonema minus UTEX_B_3156 )
ATGCTGTCTTCCCTGACGCTGTTCGAGGGCCAGAGTGCCGCGAAGCGCAG
GTTGCTAGAGGTGCAGCAATGGATAGAAGGGCAAAGCAAGGACAAGACGG
CCGCCTTGTCGTCCAAGATGAGAGCTCGCAATGCCTTGCTTCTCACCTCA
GTGATAGCAATACAGCGAGCGCTGAGAGGACACCAGGCGAGGCTGCGAGT
GCACCAGTACATGCAGGAGATCGCCGCCGCCTCGTGCATCCAACGCATGT
GGCGCGGCCACAAAGGCAGAGTCGTCGCTCAAGATCTGTTCTGGAGCAGG
GTGCAGGTGGCGCCAACGCAGTACTCCTTGGCGCTGATGATGCAGCGGTC
TCGAAGGGTGCAGACGATCAGCGGCTGGACAGAATACTTTGACACCGACG
TCAACTGCTTCTGGTACATGGACAATGCCACACGTCGCAGCACGTGGGAT
GCCCCGGAGGCCTTCAGGGAGGCGCTCACATGCAATTGGGACCCCTGGCC
GCACCCTTATAGGGGAGCTGGAGAGGAGCCATGTCGGCAGGCCTTCAAGA
CGCACGAGGAATTTCAGACCCACCGCGCGACGGCCCACCGCTGGCAGTGC
CTGGCGTGCGAGGCGATCAACGCGGCGCTGAGCTTCCCGCGCTGCGCGCT
GTGCGGCAGCGGCAGCGCCATGAACGCCCGCGACAACATCACGGCAGCAG
AT
back to top