mRNA_11851 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173474
Unique NamemRNA_11851
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173474 vs. uniprot
Match: A0A835ZG95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG95_9STRA)

HSP 1 Score: 454 bits (1167), Expect = 1.060e-155
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 1
Query:    1 MWHAGHRSGVGAVLRRSRAPIEQHASAVYTSKKQPLSGVRRDSGVGTGASAAADATADGAPGSDGALYAYVGGFAYGARDGAGVMVDGVKGESYEGEFREGRVTGVGRLTCANGDVWEGAFERGAPRGLVFFARKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLLAAGASHYVGQXXXXVKHGYGRYVFRCGDVYDGDFADDKARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEPYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFAFARRHGRGRHTWPDGVYYDGGFADGMAQGEGELVCRPPAGWEWGHRYRGLWHQNRSAPASCS 1206
            MWHAGHRSGVGAVLRRSRAPIEQHASAVYTSKKQPLSGVRRDSGVGTGASAAADATADGAPGSDGALYAYVGGFAYGARDGAGVMVDGVKGESYEGEFREGRVTGVGRLTCANGDVWEGAFERGAPRGLVFFARKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLLAAGASHYVGQXXXXVKHGYGRYVFRCGDVYDGDFADDKARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEPYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFAFARRHGRGRHTWPDGVYYDGGFADGMAQGEGELVCRPPAGWEWGHRYRGLWHQNRSAPASCS
Sbjct:    1 MWHAGHRSGVGAVLRRSRAPIEQHASAVYTSKKQPLSGVRRDSGVGTGASAAADATADGAPGSDGALYAYVGGFAYGARDGAGVMVDGVKGESYEGEFREGRVTGVGRLTCANGDVWEGAFERGAPRGLVFFARKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLLAAGASHYVGQXXXXVKHGYGRYVFRCGDVYDGDFADDKARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEPYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFAFARRHGRGRHTWPDGVYYDGGFADGMAQGEGELVCRPPAGWEWGHRYRGLWHQNRSAPASCS 402          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173474 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZG95_9STRA1.060e-155100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:515214..520011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173474|e_gw1.102.79.1
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-15_001020.1
TranscriptId173796
TrackFilteredModels1
ProteinId173474
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173474gene_11851Tribonema minus UTEX_B_3156 geneContig_102 515214..520011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173474Trimin1|173474|e_gw1.102.79.1Tribonema minus UTEX_B_3156 polypeptideContig_102 515214..520011 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11851_6exon_11851_6Tribonema minus UTEX_B_3156 exonContig_102 515214..515413 -
exon_11851_5exon_11851_5Tribonema minus UTEX_B_3156 exonContig_102 516187..516277 -
exon_11851_4exon_11851_4Tribonema minus UTEX_B_3156 exonContig_102 516309..516480 -
exon_11851_3exon_11851_3Tribonema minus UTEX_B_3156 exonContig_102 517059..517177 -
exon_11851_2exon_11851_2Tribonema minus UTEX_B_3156 exonContig_102 518628..518819 -
exon_11851_1exon_11851_1Tribonema minus UTEX_B_3156 exonContig_102 519577..520011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11851CDS_11851Tribonema minus UTEX_B_3156 CDSContig_102 519577..520011 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11851 ID=mRNA_11851|Name=jgi.p|Trimin1|173474|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1209bp|location=Sequence derived from alignment at Contig_102:515214..520011- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCACGCAGGGCATCGCTCAGGAGTCGGCGCTGTTCTGCGCCGGTC
GCGCGCCCCTATCGAGCAGCACGCTTCAGCTGTCTACACATCAAAGAAGC
AGCCGCTTTCGGGGGTTCGGAGGGACTCGGGCGTTGGCACCGGGGCGAGC
GCTGCTGCAGATGCCACTGCCGATGGCGCCCCTGGTTCTGACGGCGCGCT
GTATGCATATGTCGGGGGTTTTGCCTACGGCGCGCGCGACGGGGCGGGCG
TGATGGTTGACGGCGTCAAGGGGGAGTCGTACGAGGGGGAGTTCAGGGAG
GGGAGAGTCACAGGCGTGGGGCGGCTGACGTGCGCCAACGGGGACGTCTG
GGAGGGGGCGTTCGAGAGGGGGGCGCCGCGGGGGCTCGTGTTCTTCGCGC
GCAAGAACGGCGACGAGTACTTCGGGCACGTGCAGGAGGGCCGCGCGCAC
GGCATCGGCGTCCTCGCCCTCGCGCGTGGCGAGACGTACCGCGGCGAGTT
CGTGCGCGACAGGCGCTGCGGCCGCGGCGCGTGCATCTACCCTGACGGCG
CGCGCTACTGCGGCGGCTGGCTGCGCGATCAGCCGCACGGTTTCGGCGTG
CTGCTGCTGGCAGCAGGTGCGTCGCATTATGTGGGCCAGTGGCGCCGCGG
CGTCAAACATGGCTACGGGCGCTATGTGTTCCGCTGCGGCGACGTCTACG
ACGGCGACTTTGCGGACGACAAGGCGCGCGGCACAGGAGTGTACAGCGCC
GAGACGGGGGAGATCTACTGCGGGGGCTGGCGTGACAACCGCCGCAGCGG
CAAAGGCGAGCTCACCTGGCCCTCGGGGGCACGCTATGAGGGCGCATGGC
TCAACGGCCTGCCACACGGCTCAGGCACCATGCGCTACGCCAACGGCGAG
CACTACGCCGGTGAGCCTTATTCGGGGGTGCGCTACGAGGGGGCATGGCT
CAGCGGCCTGCCACACGGCTCAGGCACCATGCGTTACGCCAACGGCGAGC
ACTGCGCTGGCGAATTTGCATTCGCGCGCCGCCACGGCCGCGGCCGCCAC
ACATGGCCAGACGGCGTGTACTATGATGGCGGTTTTGCCGATGGCATGGC
GCAGGGGGAGGGGGAGCTCGTGTGCAGACCCCCCGCAGGGTGGGAGTGGG
GGCACCGGTATCGCGGACTGTGGCACCAAAATAGGTCAGCGCCTGCTTCT
TGCAGCTGA
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protein sequence of jgi.p|Trimin1|173474

>Trimin1|173474|e_gw1.102.79.1 ID=Trimin1|173474|e_gw1.102.79.1|Name=jgi.p|Trimin1|173474|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=403bp
MWHAGHRSGVGAVLRRSRAPIEQHASAVYTSKKQPLSGVRRDSGVGTGAS
AAADATADGAPGSDGALYAYVGGFAYGARDGAGVMVDGVKGESYEGEFRE
GRVTGVGRLTCANGDVWEGAFERGAPRGLVFFARKNGDEYFGHVQEGRAH
GIGVLALARGETYRGEFVRDRRCGRGACIYPDGARYCGGWLRDQPHGFGV
LLLAAGASHYVGQWRRGVKHGYGRYVFRCGDVYDGDFADDKARGTGVYSA
ETGEIYCGGWRDNRRSGKGELTWPSGARYEGAWLNGLPHGSGTMRYANGE
HYAGEPYSGVRYEGAWLSGLPHGSGTMRYANGEHCAGEFAFARRHGRGRH
TWPDGVYYDGGFADGMAQGEGELVCRPPAGWEWGHRYRGLWHQNRSAPAS
CS*
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mRNA from alignment at Contig_102:515214..520011-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11851 ID=mRNA_11851|Name=jgi.p|Trimin1|173474|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4798bp|location=Sequence derived from alignment at Contig_102:515214..520011- (Tribonema minus UTEX_B_3156 )
ATGTGGCACGCAGGGCATCGCTCAGGAGTCGGCGCTGTTCTGCGCCGGTC GCGCGCCCCTATCGAGCAGCACGCTTCAGCTGTCTACACATCAAAGAAGC AGCCGCTTTCGGGGGTTCGGAGGGACTCGGGCGTTGGCACCGGGGCGAGC GCTGCTGCAGATGCCACTGCCGATGGCGCCCCTGGTTCTGACGGCGCGCT GTATGCATATGTCGGGGGTTTTGCCTACGGCGCGCGCGACGGGGCGGGCG TGATGGTTGACGGCGTCAAGGGGGAGTCGTACGAGGGGGAGTTCAGGGAG GGGAGAGTCACAGGCGTGGGGCGGCTGACGTGCGCCAACGGGGACGTCTG GGAGGGGGCGTTCGAGAGGGGGGCGCCGCGGGGGCTCGTGTTCTTCGCGC GCAAGAACGGCGACGAGTACTTCGGGCACGTGCAGGTGAGCGCTGCTGCG CTGAGGCGGCGCTGCAGTAGCTGTGCTTTTTCTCCTGTGACAATGGATCT CAATGCAGTTGAAGTGGGCTGTCCACCTTCCCCATGTATGATTGGTCACG TTGCGATCGGCCGCATTACAATGAGAAGCGAGATTCTGTTCCTGATCTCT AAAAAGCCGCATATAATACCACTGGCTCACTTCCCTACTCACGTCATCAT CGATACGCATATCACGAGCCACCGAGGCTGGCGGCAGCAGGCGGTGCATA TACTGTACTTTGAAGTACCTCGGTGTACCCATTGGGGGTACCAATTCTAG CAGTGTTCAGAATATCATGTACCAACATGCTGTATATTTGCACTTGTCAA GAACATACATTTCCTCTTTGGCGCCTATGCGAGCATCGCCATTCCTGATG CACCCTCGCAGGAAGGGCGCACGCACGGCGTCGGCGTCCTTGCCTGGTGC GCGGCGAGACTCACCACGGCGAGTTTGGTCACAAAGGCGCTGCAGCGACT CATCGCAAACTGCCTTTACAATCTACAAGTCACGAGTGGCAGTGACGATG TACACTCACTGGAAAAGTAAATGTATATACGCTGAAGTGCGCCATACTAT GTGTAGTATCGACACACACACACCATCCCTGTTCTGCGCGCCAGTGCCGT CAGTGCTTGTAGCATAGTAGCCACTGTCGTGCACCCAAAACGCACGATTC TTCTTCTGTCTAAACCATGCCACCGTCGATTCACCACTGCAGGAGGGCCG CGCGCACGGCATCGGCGTCCTCGCCCTCGCGCGTGGCGAGACGTACCGCG GCGAGTTCGTGCGCGACAGGCGCTGCGGCCGCGGCGCGTGCATCTACCCT GACGGCGCGCGCTACTGCGGCGGCTGGCTGCGCGATCAGCCGCACGGTTT CGGCGTGCTGCTGCTGGCAGCAGGTGCGTCGCATGTTGAAGTCGCTGTAG TGTAAACTTTAACTTGCTTGGCCTCTACACTGACGGCTAATGCGGCGGCT GGCTGCGCGATCAGCCGCACAGCTTCGGCGTGCTGCTGCTGGCTGGAGGT GAGTCACAGGTTGAAGTCATTGTGAACTTTAAGTTGTGTTTGTCTGCCCC GATGGCGCGCGCTACTGCAATGGCTGGCTACGCGACCAGCCGCACGGGTT CCGCGTACTGCTGCTGGCAGGAGACAAGTCGCACGTTGAAGTCGGTGTGA GCTTCAAGTTGCTTGACCTCTAATTGATGGCACCCACGACCAGCCCCACG GGTTTGGCGTGCTGCTGCTGGCTGGAGGTGAGTTTTAAGTTGAGCTTACT GTAATCTTCATGTTACTTGGCATCTATTCGACGGCGCGCGGTATTGCGGC GACTCGCTGCGCCACCAGCCGCATGGCTTCGGCGTGCTGCTGCTGGTAGG AGGTGAGTCGTATGTTGAGGTCATTGTGAACTTCAAGTTGCTTGGCCGCT GTCCCAACGGCGCAGGCCGTTGTCCCAACGGCGAAGGTACTGCGCGGCGG TGGATTGCGTGACCAACCCCACGGGGTCGGCGTGCTGCTGCTGGCAGCAG GTGAGTGGTTTGTTTGTGAATGGTTGTATAAGCTTCAAGTTGCTTGGCCT CTACTTTGGCGGCGTACGCTACTGCAGCGGCTGGCTGCGCAAGCAGCGCT GCCGATTTGGCTGGCGGAAGGTGAATTGTGTGTTGCGTCAACTTCTTGCG CCCGTGGCATGTTATCAAAAAAGGGTATCTTACATGCTATTTGTGCAAGA GTGCCGCTGTGTCTGACATCACCATCTTGCACGCTCACCTCAATGCACTC AAAGAAGGCGTCATTACCCCTGTACGTCTCCCACACATAGACGATCATCG ATTCAAATTGGTGAGCTTCAAGCTGATTGGCATGCTGATCTTCCTGCCTT TTGTGCTGGGCCGTGTGGTCCGGGTGGTACGTCACTTAAAGTTGAAGTGT AACATTTTGTCCCGTTGTGACACCACATACGGAGCAAGTGCACTGCAAAA TGATACTGTTCTCAAAAAGTGCCACAGTGTAGACTGTGTCCTGCAATCAA AGGTATCTCACTTGAGAGGCAGCAGCAGCTCCCAACTAGTCAGAACCTCA AAAGCAAGTACAAAACGGGGGGTTGCCTTGTACCACCAACCCCAAGATTG GGATTCAAAGAATTGCGGACAACAAATTCTGTAGTATTGCCCCCCCTACG CCCCCCCCCCCCCCCCGTGCTTACATGACATCTTGAAAGAATGCCCCGCG CCTTCCATTTTGACACCCGTAGACACAAATTTATCAAAATTCTTTGCATC TGCATGCCAATTCAAGTCTGGCTTGAACTGGAAGCATCAAATTTTGGTTT ACTGCTTATTTGCGCGCACTCGTCAGGGGACAAGTATGTGGGCCAGTGGC GCCGCGGCGTCAAACATGGCTACGGGCGCTATGTGTTCCGCTGCGGCGAC GTCTACGACGGCGACTTTGCGGACGACAAGGCGCGCGGCACAGGAGTGTA CAGGTAATCCTAACCCTGACCCTGAACCCCTGACCCTATCCCTAACCCCA GCCTAAACAATGCCCTAAGGACGACAAGGCGCGCAGCACAGGTGTGTACA GGTGATGCTGGTCTAATCAGCCTCTCCAGAATGCAGTCAATAATGAGGCA CTATGTTACATGAGGCGAAGGCACACATAGGGCTGCTGGTCAGTGCAATA TCACATGATGATACATAGCAAATACTGTGACTGAGCTTGCACAACCAAAG ACAAAACACCCGCTGAGCAGATCTGGACGGGCACATCAGTGCTCAGCATG ACGGTGATACCGTGATAGATTAGCCTCTTCAAGGTTGCAGGTTGAACGCT CCTGAGAGACACACGAAGTTGCATGCTTGCCCGCACGAGTCCTGCCTATA CAGATTCCACCAATACACGCACCCAACCACCGTCGTGACGACAAGCAGAA ACAAGGCGCAGAGATCTTGATGTGGTGTAAAGCTCAGTTTAGATTGACAA AAATGCCAATAGAAGCCCCCCACATTTTTCCTCAACGATTTTTTTATACC CCCACTTGTTCAACCACTCCGCTCGCAGGAGCGCCGAGACGGGGGAGATC TACTGCGGGGGCTGGCGTGACAACCGCCGCAGCGGCAAAGGCGAGCTCAC CTGGCCCTCGGGGGCACGCTATGAGGGCGCATGGCTCAACGGCCTGCCAC ACGGCTCAGGCACCATGCGCTACGCCAACGGCGAGCACTACGCCGGTGAG CCTGTCACCTGTGCATAATTCCTACCTCAAGAAGTATTCGGGGGTGCGCT ACGAGGGGGCATGGCTCAGCGGCCTGCCACACGGCTCAGGCACCATGCGT TACGCCAACGGCGAGCACTGCGCTGGTGAGCCTCACCAGTACACAAGGGG AACAGGCCCTAAAGAGTGTGAAGTGTGAAGTTTCAGCGAAGAGTCTGGGA TAGGCAGCAGCATGTGCATCACTCCTTGCTTGGCATCGATTAGCAAGGCT AGGCACACGGCTGTAGCAGAGTACTAGCTGGTAGGCTGGCAGAGAATGGG TCAGGCACCATGCACTACGCCAACGGCGAGCACCACATCGGTGAGCCTGT CACCTGTGCATGACTCCTACTTCAAGAAACATTGAAAACTGCACAGAAGT AAATGTTGCTCGGGGGCTCAACGGCCTGCCACACGGCTCAGGCACCATGC GCTACGCCACGGCGAGCATTACGTCGGTGAGCCTCCCCAGTGCATAATTT CCACCCTAAGAAGCATCATAACTGCACAGAAGCAAGTGTTGCTGGCTCTG GGAAAAGACGCTGTTTGAATACTTAAGGGAGGCAATAATGCCAATGGCAA GCATTACGCTGGTGAGCTTGCACGCACTTGTTTGCTTTTTGCAGCTGCAA AGAAGCAAGCGGTGCTCGATGTTGTACCACGCTGGGTAGAGACACTCCCC GCTATCCAGACTCCAAAAGGGGACAAAAAGGCGGACTGTAGAGTACAGTT GCCTCGGCTAGCTGTGCTGCACCGCCAAGCCCCTGCTTCGGATTTTCCTC GCCCCCCAGTCTGCAGACTCATCACCAGTCACATTACATCAAATTTGACA ACTTCATCGGCGTCACTCCCACTGCCATGCCTCCCATCTGACGCCCAGGC GAATTTGCATTCGCGCGCCGCCACGGCCGCGGCCGCCACACATGGCCAGA CGGCGTGTACTATGATGGCGGTTTTGCCGATGGCATGGCGCAGGGGGAGG GGGAGCTCGTGTGCAGACCCCCCGCAGGGTGGGAGTGGGGGCACCGGTAT CGCGGACTGTGGCACCAAAATAGGTCAGCGCCTGCTTCTTGCAGCTGA
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Coding sequence (CDS) from alignment at Contig_102:515214..520011-

>mRNA_11851 ID=mRNA_11851|Name=jgi.p|Trimin1|173474|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1209bp|location=Sequence derived from alignment at Contig_102:515214..520011- (Tribonema minus UTEX_B_3156 )
ATGTGGCACGCAGGGCATCGCTCAGGAGTCGGCGCTGTTCTGCGCCGGTC
GCGCGCCCCTATCGAGCAGCACGCTTCAGCTGTCTACACATCAAAGAAGC
AGCCGCTTTCGGGGGTTCGGAGGGACTCGGGCGTTGGCACCGGGGCGAGC
GCTGCTGCAGATGCCACTGCCGATGGCGCCCCTGGTTCTGACGGCGCGCT
GTATGCATATGTCGGGGGTTTTGCCTACGGCGCGCGCGACGGGGCGGGCG
TGATGGTTGACGGCGTCAAGGGGGAGTCGTACGAGGGGGAGTTCAGGGAG
GGGAGAGTCACAGGCGTGGGGCGGCTGACGTGCGCCAACGGGGACGTCTG
GGAGGGGGCGTTCGAGAGGGGGGCGCCGCGGGGGCTCGTGTTCTTCGCGC
GCAAGAACGGCGACGAGTACTTCGGGCACGTGCAGGAGGGCCGCGCGCAC
GGCATCGGCGTCCTCGCCCTCGCGCGTGGCGAGACGTACCGCGGCGAGTT
CGTGCGCGACAGGCGCTGCGGCCGCGGCGCGTGCATCTACCCTGACGGCG
CGCGCTACTGCGGCGGCTGGCTGCGCGATCAGCCGCACGGTTTCGGCGTG
CTGCTGCTGGCAGCAGGTGCGTCGCATTATGTGGGCCAGTGGCGCCGCGG
CGTCAAACATGGCTACGGGCGCTATGTGTTCCGCTGCGGCGACGTCTACG
ACGGCGACTTTGCGGACGACAAGGCGCGCGGCACAGGAGTGTACAGCGCC
GAGACGGGGGAGATCTACTGCGGGGGCTGGCGTGACAACCGCCGCAGCGG
CAAAGGCGAGCTCACCTGGCCCTCGGGGGCACGCTATGAGGGCGCATGGC
TCAACGGCCTGCCACACGGCTCAGGCACCATGCGCTACGCCAACGGCGAG
CACTACGCCGGTGAGCCTTATTCGGGGGTGCGCTACGAGGGGGCATGGCT
CAGCGGCCTGCCACACGGCTCAGGCACCATGCGTTACGCCAACGGCGAGC
ACTGCGCTGGCGAATTTGCATTCGCGCGCCGCCACGGCCGCGGCCGCCAC
ACATGGCCAGACGGCGTGTACTATGATGGCGGTTTTGCCGATGGCATGGC
GCAGGGGGAGGGGGAGCTCGTGTGCAGACCCCCCGCAGGGTGGGAGTGGG
GGCACCGGTATCGCGGACTGTGGCACCAAAATAGGTCAGCGCCTGCTTCT
TGCAGCTGA
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