mRNA_11847 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173416
Unique NamemRNA_11847
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173416 vs. uniprot
Match: A0A836CP46_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP46_9STRA)

HSP 1 Score: 255 bits (652), Expect = 3.910e-86
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 QSSWTALHCAIIQGPGCLAIVKHLLAAGADVTAATRQNRSTPLLLAAVSQQLDVLKLLLEYPEVVECINEPDVKGYTPLALAVLLDDVPMAELLLQNGASPTCGMQWQTAWYPLSAAVQHNNADMIR 381
            QSSWTALHCAIIQGPGCLAIVKHLLAAGADVTAATRQNRSTPLLLAAVSQQLDVLKLLLEYPEVVECINEPDVKGYTPLALAVLLDDVPMAELLLQNGASPTCGMQWQTAWYPLSAAVQHNNADMIR
Sbjct:    1 QSSWTALHCAIIQGPGCLAIVKHLLAAGADVTAATRQNRSTPLLLAAVSQQLDVLKLLLEYPEVVECINEPDVKGYTPLALAVLLDDVPMAELLLQNGASPTCGMQWQTAWYPLSAAVQHNNADMIR 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173416 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CP46_9STRA3.910e-86100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:478927..479310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173416|e_gw1.102.106.1
BRITEko00000,ko03051
KEGG koko:K06694
Descriptionproteasome regulatory particle assembly
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Evalue1.22e-05
Seed ortholog29875.EHK23474
Hectar predicted targeting categoryother localisation
TranscriptId173738
TrackFilteredModels1
ProteinId173416
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173416gene_11847Tribonema minus UTEX_B_3156 geneContig_102 478927..479310 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11847_1exon_11847_1Tribonema minus UTEX_B_3156 exonContig_102 478927..479310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11847CDS_11847Tribonema minus UTEX_B_3156 CDSContig_102 478927..479310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173416Trimin1|173416|e_gw1.102.106.1Tribonema minus UTEX_B_3156 polypeptideContig_102 478927..479310 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11847 ID=mRNA_11847|Name=jgi.p|Trimin1|173416|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_102:478927..479310+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGAGCTCGTGGACCGCTCTACACTGCGCCATTATACAAGGCCCTGGCTG
CCTGGCAATTGTCAAACATCTGCTGGCGGCAGGCGCAGATGTCACAGCTG
CCACCAGACAGAACCGCTCAACACCGCTGCTGCTGGCGGCTGTGTCCCAG
CAGCTGGATGTACTGAAGTTGCTGCTTGAGTATCCGGAGGTAGTCGAGTG
CATCAATGAGCCAGACGTCAAGGGCTACACGCCTCTAGCTTTGGCTGTGC
TGCTGGATGATGTGCCCATGGCTGAGCTGCTGCTGCAGAACGGGGCTTCC
CCAACATGTGGCATGCAGTGGCAAACAGCATGGTACCCGCTGAGCGCTGC
TGTTCAGCACAACAATGCTGATATGATCAGGTAA
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protein sequence of jgi.p|Trimin1|173416

>Trimin1|173416|e_gw1.102.106.1 ID=Trimin1|173416|e_gw1.102.106.1|Name=jgi.p|Trimin1|173416|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
QSSWTALHCAIIQGPGCLAIVKHLLAAGADVTAATRQNRSTPLLLAAVSQ
QLDVLKLLLEYPEVVECINEPDVKGYTPLALAVLLDDVPMAELLLQNGAS
PTCGMQWQTAWYPLSAAVQHNNADMIR*
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mRNA from alignment at Contig_102:478927..479310+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11847 ID=mRNA_11847|Name=jgi.p|Trimin1|173416|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_102:478927..479310+ (Tribonema minus UTEX_B_3156 )
CAGAGCTCGTGGACCGCTCTACACTGCGCCATTATACAAGGCCCTGGCTG
CCTGGCAATTGTCAAACATCTGCTGGCGGCAGGCGCAGATGTCACAGCTG
CCACCAGACAGAACCGCTCAACACCGCTGCTGCTGGCGGCTGTGTCCCAG
CAGCTGGATGTACTGAAGTTGCTGCTTGAGTATCCGGAGGTAGTCGAGTG
CATCAATGAGCCAGACGTCAAGGGCTACACGCCTCTAGCTTTGGCTGTGC
TGCTGGATGATGTGCCCATGGCTGAGCTGCTGCTGCAGAACGGGGCTTCC
CCAACATGTGGCATGCAGTGGCAAACAGCATGGTACCCGCTGAGCGCTGC
TGTTCAGCACAACAATGCTGATATGATCAGGTAA
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Coding sequence (CDS) from alignment at Contig_102:478927..479310+

>mRNA_11847 ID=mRNA_11847|Name=jgi.p|Trimin1|173416|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_102:478927..479310+ (Tribonema minus UTEX_B_3156 )
CAGAGCTCGTGGACCGCTCTACACTGCGCCATTATACAAGGCCCTGGCTG
CCTGGCAATTGTCAAACATCTGCTGGCGGCAGGCGCAGATGTCACAGCTG
CCACCAGACAGAACCGCTCAACACCGCTGCTGCTGGCGGCTGTGTCCCAG
CAGCTGGATGTACTGAAGTTGCTGCTTGAGTATCCGGAGGTAGTCGAGTG
CATCAATGAGCCAGACGTCAAGGGCTACACGCCTCTAGCTTTGGCTGTGC
TGCTGGATGATGTGCCCATGGCTGAGCTGCTGCTGCAGAACGGGGCTTCC
CCAACATGTGGCATGCAGTGGCAAACAGCATGGTACCCGCTGAGCGCTGC
TGTTCAGCACAACAATGCTGATATGATCAGGTAA
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