mRNA_11814 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173418
Unique NamemRNA_11814
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173418 vs. uniprot
Match: A0A836CP73_9STRA (DOCKER domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP73_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.740e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPEASLLLRALQEEIERGFVKMVRGMEPYLSGNEGWADLTEHAAHFEGR 327
            VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPEASLLLRALQEEIERGFVKMVRGMEPYLSGNEGWADLTEHAAHFEGR
Sbjct:    1 VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPEASLLLRALQEEIERGFVKMVRGMEPYLSGNEGWADLTEHAAHFEGR 109
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BLAST of jgi.p|Trimin1|173418 vs. uniprot
Match: D8LBY0_ECTSI (DOCKER domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 9.330e-22
Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPEASLLLRALQEEIERGFVKMVRGMEPYLSGNEGWADLTEHAAHF 318
            V  R V  LSPIECSIDDI +RI  MREE+ AGIDR   ++T+ L +LVQGSVLPQV +   E ++L    Q E+ERGF KM++ ME YL   EGW DL     ++
Sbjct:    2 VYRRVVTLLSPIECSIDDIGSRIVTMREEMQAGIDRA--SDTRGLTRLVQGSVLPQVNA---EHNILW---QGEMERGFSKMMQAMEVYLQEGEGWEDLKASTKNY 99
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BLAST of jgi.p|Trimin1|173418 vs. uniprot
Match: A0A6H5JRM0_9PHAE (DOCKER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.480e-11
Identity = 45/75 (60.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPE-ASLLLRALQEE 222
            V  R V  LSPIECSIDDI +RI  MREEV AGIDR   ++T+ L +LVQGSVLPQV   A E A   L+AL  E
Sbjct:    6 VYRRVVTLLSPIECSIDDIGSRIVTMREEVQAGIDRA--SDTRCLTRLVQGSVLPQVNGGAVEVAETFLKALPPE 78
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173418 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CP73_9STRA3.740e-71100.00DOCKER domain-containing protein (Fragment) n=1 Ta... [more]
D8LBY0_ECTSI9.330e-2252.83DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JRM0_9PHAE3.480e-1160.00DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:191567..193782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173418|e_gw1.102.110.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDedicator of cytokinesis C-terminal
Ec32 orthologEc-20_003700.1
TranscriptId173740
TrackFilteredModels1
ProteinId173418
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173418gene_11814Tribonema minus UTEX_B_3156 geneContig_102 191567..193782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173418Trimin1|173418|e_gw1.102.110.1Tribonema minus UTEX_B_3156 polypeptideContig_102 191567..193782 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11814_2exon_11814_2Tribonema minus UTEX_B_3156 exonContig_102 191567..191724 -
exon_11814_1exon_11814_1Tribonema minus UTEX_B_3156 exonContig_102 193611..193782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11814CDS_11814Tribonema minus UTEX_B_3156 CDSContig_102 193611..193782 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11814 ID=mRNA_11814|Name=jgi.p|Trimin1|173418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_102:191567..193782- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGCGCACCGCGCGGTGCGCTTCCTGAGCCCCATCGAGTGCTCCATCGA
CGACATCCAGACGCGCATACGCGTCATGCGCGAGGAGGTGGCGGCGGGCA
TCGACCGGCGCAAGCGCAACAACACGCAGAACCTCATGCAGCTCGTGCAG
GGGTCCGTGCTGCCGCAGGTGTGCTCCATGGCGCCCGAGGCGTCGCTGCT
GCTGCGCGCGCTGCAGGAGGAGATCGAGCGCGGCTTTGTCAAGATGGTGC
GCGGCATGGAGCCGTACCTCTCCGGCAACGAGGGCTGGGCGGACCTCACG
GAGCACGCCGCGCACTTCGAGGGCAGGTGA
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protein sequence of jgi.p|Trimin1|173418

>Trimin1|173418|e_gw1.102.110.1 ID=Trimin1|173418|e_gw1.102.110.1|Name=jgi.p|Trimin1|173418|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQ
GSVLPQVCSMAPEASLLLRALQEEIERGFVKMVRGMEPYLSGNEGWADLT
EHAAHFEGR*
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mRNA from alignment at Contig_102:191567..193782-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11814 ID=mRNA_11814|Name=jgi.p|Trimin1|173418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2216bp|location=Sequence derived from alignment at Contig_102:191567..193782- (Tribonema minus UTEX_B_3156 )
GTCGCGCACCGCGCGGTGCGCTTCCTGAGCCCCATCGAGTGCTCCATCGA
CGACATCCAGACGCGCATACGCGTCATGCGCGAGGAGGTGGCGGCGGGCA
TCGACCGGCGCAAGCGCAACAACACGCAGAACCTCATGCAGCTCGTGCAG
GGGTCCGTGCTGCCGCAGGTGTGTATGTAGGCTGCGCACGCGATAGGCGT
ACGCCTGACCCTGTCACCCGAATGTTGTCAAGAGTTCGCCATGAACTCAT
TGTGTACTCCAACATCGGTTCACGTGTACCGCGTGTGATGCGTGAGGACG
CGGCGGGCATTGACCGTCGAAAGCAAGCGCCAGAACTCGCAGGTGCATGC
GACGCCTCCTCAGATGGCACTGACAGTATCAGACCGCCATTGGTGGAGGC
GCGCATCCCCCACATTTTACGCGATTGCTTCAGCGCGTTTGCTGTCACAC
AGACCCGTGGATGAGCAGCTGGCACGCTGCATTTGCAAGGCTGCGCGCGC
GTCGCTCGTGGCGTGCGTGTCCGCAGCACACGGCGGGCGAGGCGCAGGCA
GCGCAGCAGTTTTTCCCAACGCAGCGCGAGGGCGGCGCGCACTCGCCAAA
TCGTGCAACAGTCTCAGCGATTCCGTCCCCACCGCGTGCACCAATCAGCA
AGCCGCCAACAGGTCTAATTCGCGCCTCTGCCGTGTGTTTCGTGGCACCC
CTGAGCAGGTGAACGGCGGCGCGACAGAGGTTGCGGAGACGTTCCTCAAG
CACACACACACCAGTCGCGCAACTATTTCAGGGATGTCGTCTCCAATGTG
CACCAATCCCCAATTGCCAACAAACCTCGTTCGCGACTTGCGCTGCGTGT
TTCGGCGCCTCGGCGCAGGTGAACGGCGGCGCGACGGAGGTCGCGGCGAC
GTTCCTCAAGCCCACACCCACCGTTTCATGCAGCAGCTTCGGCGATTGAG
CATCCAGTGTGCACCAGTTTGCAAACCGCTGACCGCCCGCGTTCGCACCT
CTGCCGCATGCCGCGACGTCGCTTTGCAACAGGTGAACGGCGGCGCGACG
GAAGTCGCAGAGACGTTCCTGAAGCGCGGCGAGGGCGGCGCGCACCCGCC
GATCCCCTTCACCACGCCCGCGCAGGCGGACGCGCACCGCGCCGCGCTCA
CGCGCACGCTCGTCCTCTTCCTGGACCTCTGCTACCAGCTCATCATCAAG
GCGCGCTGCGTGCTCGCGCCGCCGCCGCCGGGCGACGGCGGCGGCGGCGG
CGGCGGCGGCGCGCTGCCGACGTCGCCTAGCGCGGCGCTCGCGCAGCGCG
TCGGTGTGGGCGGCGGCGGCGGCGGCAACGGCGGTTCGTCCTTCGACGAC
GGTGAGCGGTATTGAACAAGTGTTGTCCTCATTTGTAGTTTGCAATGTCA
CGGCCTCTTGGTATTGCTCCCATGCGTCATGCACGGCGGCAGCGGCAGCT
GCGGCGGCAGCGGCGGCGGCGCGTCCTTCGACGACGTGCGAGTGGCACTG
AATACTGTGCTTGTGTGATATTGTGGCTGAGAGCAGAAGAATGCTTCCCG
TTAAGATCGTGTCGACAGGATGTCTCTAAACTCGGCACTGGCGCAGCGCA
TTAGGTTGGGCAGTGGCATCAACGGCTGCGGCGGCGGCGTTGGCAACAGC
AGGGGGTCTTGTGACAATGGCGAGTGGTCTGCGCCGTGCCTGCATTGCGG
TTCAGCGGACTTCCAAGGCAGCAGGAGCTACTGCAGAAGCAATTGAGTGC
TGCTCGTCAAGGCGCTCTGTCCTGTGCATGCACGTGGTGGCTCTCATGTA
GCTGCTGACGTCATTCGCGAGCTTGGATGGCGTGCATGGCCTCGGGCCCG
ATGGCGCTGCTGCAGCAAGCGGAACAACAGAGTGCGGCTCTGGTTGCTGA
TATAGCGCGCGGCACAGTTAACAGGGCCTTCGCACTTTTGCACAATGTCC
ACCTCTGGAACAGGAACCATCACTACTCTTACCTGTGGGCATTTGACACA
CGCAATGACTGACCAATCGGCGCGTCTGCTCTGCCAAACGCGCGCGGCGC
CGCCGCAGGCTCCATGGCGCCCGAGGCGTCGCTGCTGCTGCGCGCGCTGC
AGGAGGAGATCGAGCGCGGCTTTGTCAAGATGGTGCGCGGCATGGAGCCG
TACCTCTCCGGCAACGAGGGCTGGGCGGACCTCACGGAGCACGCCGCGCA
CTTCGAGGGCAGGTGA
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Coding sequence (CDS) from alignment at Contig_102:191567..193782-

>mRNA_11814 ID=mRNA_11814|Name=jgi.p|Trimin1|173418|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_102:191567..193782- (Tribonema minus UTEX_B_3156 )
GTCGCGCACCGCGCGGTGCGCTTCCTGAGCCCCATCGAGTGCTCCATCGA
CGACATCCAGACGCGCATACGCGTCATGCGCGAGGAGGTGGCGGCGGGCA
TCGACCGGCGCAAGCGCAACAACACGCAGAACCTCATGCAGCTCGTGCAG
GGGTCCGTGCTGCCGCAGGTGTGCTCCATGGCGCCCGAGGCGTCGCTGCT
GCTGCGCGCGCTGCAGGAGGAGATCGAGCGCGGCTTTGTCAAGATGGTGC
GCGGCATGGAGCCGTACCTCTCCGGCAACGAGGGCTGGGCGGACCTCACG
GAGCACGCCGCGCACTTCGAGGGCAGGTGA
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