mRNA_11801 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156304
Unique NamemRNA_11801
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156304 vs. uniprot
Match: A0A836CMX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX7_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.820e-98
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 GHFHCAPWVALCEALHILLPQQHRAAAAGGSTLCAESRFRQSFPCAIADVLAGRHDLRAPLIAAVIDTATKASDANLVVTLADPTGKIQAVVHQQALFEHAGDLVTGAALALRRAAIWVSGPGTQRALNIHPDNIMAVFPVSTPMPS 441
            GHFHCAPWVALCEALHILLPQQHRAAAAGGSTLCAESRFRQSFPCAIADVLAGRHDLRAPLIAAVIDTATKASDANLVVTLADPTGKIQAVVHQQALFEHAGDLVTGAALALRRAAIWVSGPGTQRALNIHPDNIMAVFPVSTPMPS
Sbjct:    1 GHFHCAPWVALCEALHILLPQQHRAAAAGGSTLCAESRFRQSFPCAIADVLAGRHDLRAPLIAAVIDTATKASDANLVVTLADPTGKIQAVVHQQALFEHAGDLVTGAALALRRAAIWVSGPGTQRALNIHPDNIMAVFPVSTPMPS 147
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BLAST of jgi.p|Trimin1|156304 vs. uniprot
Match: D8LFD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD2_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.030e-27
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1 
Query:    1 GHFHCAPWVALCEALHILLPQQHRAAAAGGSTLCAESRFRQSFPCAIADVLAGRHDLRAPLIAAVIDTATKASDANLVVTLADPTGKIQAVVHQQALFEHAGDLVTGAALALRRAAIWVSGPGTQRALNIHPDNIMAVFPVSTPMPS 441
            GHF   PW++LC A+   + ++      G S   A   F +     + +VLAG  DLR P++ AVID+ TK S +++VV L DP+G+I+  +H   L EH   L  GAAL L+  +I+VSGPGT R LN+HPD ++AVFP  T  P+
Sbjct:   48 GHFTKGPWLSLCSAIDAPIAEE------GASGSKAVQAFLRGAVSPMLEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPA 188
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156304 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CMX7_9STRA1.820e-98100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LFD2_ECTSI1.030e-2742.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:132621..133061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156304|gw1.102.124.1
Preferred nameC17orf53
DescriptionDomain of unknown function (DUF4539)
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs28NJS@1|root,2QV5E@2759|Eukaryota,38GT6@33154|Opisthokonta,3BD0X@33208|Metazoa,3D40I@33213|Bilateria
Evalue0.000441
Seed ortholog7668.SPU_021777-tr
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4539
Ec32 orthologEc-07_005850.1
TranscriptId156626
TrackFilteredModels1
ProteinId156304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156304gene_11801Tribonema minus UTEX_B_3156 geneContig_102 132621..133061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11801_1exon_11801_1Tribonema minus UTEX_B_3156 exonContig_102 132621..133061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11801CDS_11801Tribonema minus UTEX_B_3156 CDSContig_102 132621..133061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156304Trimin1|156304|gw1.102.124.1Tribonema minus UTEX_B_3156 polypeptideContig_102 132621..133061 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11801 ID=mRNA_11801|Name=jgi.p|Trimin1|156304|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_102:132621..133061- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGCACTTCCACTGCGCGCCGTGGGTGGCGCTGTGCGAGGCGCTGCACAT
CCTGCTGCCGCAGCAGCACCGCGCCGCCGCCGCCGGCGGCAGCACGCTCT
GCGCCGAGAGCCGCTTCCGCCAGTCCTTCCCGTGCGCCATCGCGGACGTC
CTGGCGGGGCGCCACGACCTCCGCGCGCCGCTCATCGCCGCCGTCATCGA
CACGGCGACGAAGGCGTCGGATGCGAACCTGGTCGTCACCCTCGCGGATC
CCACCGGGAAGATCCAGGCGGTCGTGCACCAGCAGGCGCTGTTCGAACAC
GCCGGCGACCTTGTCACAGGCGCGGCGCTGGCGTTGCGGCGCGCGGCGAT
CTGGGTGTCGGGCCCCGGCACGCAGCGCGCGCTCAACATCCATCCCGACA
ACATCATGGCCGTGTTTCCGGTCTCAACGCCCATGCCCTCG
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protein sequence of jgi.p|Trimin1|156304

>Trimin1|156304|gw1.102.124.1 ID=Trimin1|156304|gw1.102.124.1|Name=jgi.p|Trimin1|156304|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
GHFHCAPWVALCEALHILLPQQHRAAAAGGSTLCAESRFRQSFPCAIADV
LAGRHDLRAPLIAAVIDTATKASDANLVVTLADPTGKIQAVVHQQALFEH
AGDLVTGAALALRRAAIWVSGPGTQRALNIHPDNIMAVFPVSTPMPS
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mRNA from alignment at Contig_102:132621..133061-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11801 ID=mRNA_11801|Name=jgi.p|Trimin1|156304|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_102:132621..133061- (Tribonema minus UTEX_B_3156 )
GGGCACTTCCACTGCGCGCCGTGGGTGGCGCTGTGCGAGGCGCTGCACAT
CCTGCTGCCGCAGCAGCACCGCGCCGCCGCCGCCGGCGGCAGCACGCTCT
GCGCCGAGAGCCGCTTCCGCCAGTCCTTCCCGTGCGCCATCGCGGACGTC
CTGGCGGGGCGCCACGACCTCCGCGCGCCGCTCATCGCCGCCGTCATCGA
CACGGCGACGAAGGCGTCGGATGCGAACCTGGTCGTCACCCTCGCGGATC
CCACCGGGAAGATCCAGGCGGTCGTGCACCAGCAGGCGCTGTTCGAACAC
GCCGGCGACCTTGTCACAGGCGCGGCGCTGGCGTTGCGGCGCGCGGCGAT
CTGGGTGTCGGGCCCCGGCACGCAGCGCGCGCTCAACATCCATCCCGACA
ACATCATGGCCGTGTTTCCGGTCTCAACGCCCATGCCCTCG
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Coding sequence (CDS) from alignment at Contig_102:132621..133061-

>mRNA_11801 ID=mRNA_11801|Name=jgi.p|Trimin1|156304|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_102:132621..133061- (Tribonema minus UTEX_B_3156 )
GGGCACTTCCACTGCGCGCCGTGGGTGGCGCTGTGCGAGGCGCTGCACAT
CCTGCTGCCGCAGCAGCACCGCGCCGCCGCCGCCGGCGGCAGCACGCTCT
GCGCCGAGAGCCGCTTCCGCCAGTCCTTCCCGTGCGCCATCGCGGACGTC
CTGGCGGGGCGCCACGACCTCCGCGCGCCGCTCATCGCCGCCGTCATCGA
CACGGCGACGAAGGCGTCGGATGCGAACCTGGTCGTCACCCTCGCGGATC
CCACCGGGAAGATCCAGGCGGTCGTGCACCAGCAGGCGCTGTTCGAACAC
GCCGGCGACCTTGTCACAGGCGCGGCGCTGGCGTTGCGGCGCGCGGCGAT
CTGGGTGTCGGGCCCCGGCACGCAGCGCGCGCTCAACATCCATCCCGACA
ACATCATGGCCGTGTTTCCGGTCTCAACGCCCATGCCCTCG
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